BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G12990.1
Length=243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488115 jgi|Araly1|488115|fgenesh2_kg.6__1249__AT5G12990.1 388 7e-108
> Ahg488115 jgi|Araly1|488115|fgenesh2_kg.6__1249__AT5G12990.1
Length=243
Score = 388 bits (210), Expect = 7e-108
Identities = 232/243 (95%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGCGATGAAATACAAAGGAAGCGTTTTTATCATATTAGTCATCCTTCTTCTTTCG 60
|||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 1 ATGGCGGCGATGAAATACAAAGGAAGTGTTTTCATCATATCAGTCATCCTTCTTCTTTCG 60
Query 61 TCCTCACTACTTGCTCACTCTTCTTCTACAAAATCCTTCTTTTGGTTAGGAGAAACACAA 120
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 TCCCCACTACTTGCTCACTCTTCTTCTACAAAATCTTTCTTTTGGTTAGGAGAAACACAA 120
Query 121 GATACGAAAGCCATGAAAAAGGAGAAGAAGATTGATGGAGGAACAGCTAATGAAGTTGAA 180
||||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||||
Sbjct 121 GATACGAAAACCATGAAAAAGGAGAAGGAGATTAACGGAGGAACAGCTAATGAAGTTGAA 180
Query 181 GAAAGACAAGTTCCAACTGGATCCGACCCTCTTCATCATAAACACATTCCTTTTACTCCA 240
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 GAAAGACAAGTTCCGACTGGATCCGACCCTCTTCATCATAAACACCTTCCTTTTACTCCA 240
Query 241 TAG 243
|||
Sbjct 241 TAG 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8401417420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5