BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13020.1
Length=1850
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488118 jgi|Araly1|488118|fgenesh2_kg.6__1252__AT5G13020.1 2351 0.0
> Ahg488118 jgi|Araly1|488118|fgenesh2_kg.6__1252__AT5G13020.1
Length=1440
Score = 2351 bits (1273), Expect = 0.0
Identities = 1389/1444 (96%), Gaps = 11/1444 (1%)
Strand=Plus/Plus
Query 414 ATGGATTACCGACCTTCTGATAGTAGTGGTACAGATGATGACCTGCCTCCATCTCATCAA 473
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGATTACCGACCTTCTGATAGTAGTGGTACAGATGATGATCTGCCTCCATCTCATCAA 60
Query 474 GGTAGATATCAAAGAAACGCCAGACCTACCGGGAATGGAAGGCCTTCAGTTCTCAATTCT 533
|||||||||||| ||| |||||||||| | || |||||||||||||||||||| ||||||
Sbjct 61 GGTAGATATCAACGAAGCGCCAGACCTGCTGGCAATGGAAGGCCTTCAGTTCTTAATTCT 120
Query 534 GCTCCTTTATCACGGGTGCACAATGAAATGGAAACTCAAATTCATCTCATTGAGCAAGAA 593
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 GCTCCTTTATCACGGGTGCACAATGACATGGAAACTCAAATTCATCTCATTGAGCAAGAA 180
Query 594 GCTTATAGCTCGATACTCCGCGCATTTAAAGCCCAGTCCGATGCTATTACCTGGGAGAAA 653
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCGTATAGCTCGATACTCCGCGCATTTAAAGCCCAGTCCGATGCTATTACCTGGGAGAAA 240
Query 654 GAAAGTTTGATCACTGAACTCAGAAAAGAACTTCGAGTGTCTGATGAGGAACACAGAGAG 713
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 GAAAGTTTGATCACTGAACTCAGAAAAGAACTTCGGGTGTCTGATGAGGAACACAGAGAG 300
Query 714 CTGTTATCAAGGGTTAACGCTGATGAAATGATCAGGCGAATAAGGGAATGGAGAAAGGCA 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTGTTATCAAGGGTTAACGCTGATGAAATGATCAGGCGAATAAGGGAATGGAGAAAGGCA 360
Query 774 AACAGCCTTCAGTCTAGTGTTCCTCAGCTGGTTCATGATGCTCCGAGTCCGGCTGTATCA 833
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AACAGCCTTCAGTCCAGTGTTCCTCAGCTGGTTCATGATGCTCCGAGTCCGGCTGTATCA 420
Query 834 GGATCACGTAAGAAGCAAAAGACATCACAATCAATCGCCTCATTAGCGATGGGCCCACCA 893
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 GGATCACGTAAGAAGCAAAAGACATCACAGTCAATCGCCTCATTAGCGATGGGCCCACCA 480
Query 894 TCTCCTTCTTTGCACCCTTCAATGCAACCATCGTCATCTGCACTAAGAAGGGGAGGTCCT 953
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCTCCTTCTTTGCACCCTTCGATGCAACCATCGTCATCTGCACTAAGAAGGGGAGGTCCT 540
Query 954 CCACCAGGTCCAAAGACCAAGAAGCCAAAGACATCGATGCAGTACCCATCTACAGGCATT 1013
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
Sbjct 541 CCACCAGGTCCAAAGACCAAGAAGCCAAAGACATCAATGCAGTACCCACCTACAGGCA-T 599
Query 1014 G-CTGGAAGGCCCCAGGCTGGCGCTTTAACAAATGAACCAGGTGAATCGGGATCATATGA 1072
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 GCCTGGAAGGCCCCAGGCTGGTGCTTTAACAAATGAACCAGGTGAATCGGGATCATATGA 659
Query 1073 CCCGTTGGTTGGAAGGAAGGTATGGACGAAGTGGCCTGATGACAACCAATACTACGAAGC 1132
||| ||||||||||||||||||||||||||||||||||| |||||||| | ||| |||||
Sbjct 660 CCCATTGGTTGGAAGGAAGGTATGGACGAAGTGGCCTGACGACAACCATTTCTATGAAGC 719
Query 1133 TGTTATAACTGACTACAACCCTGTTGAGGGGCGTCATGCTTTAGTGTATGATATTAACTC 1192
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 720 TGTTATAACTGACTACAACCCTGTCGAGGGGCGGCATGCTTTAGTGTATGATATTAACTC 779
Query 1193 TGCGAATGAAACCTGGGAATGGGTAAATCTTAAAGAGATATCTCCGGGAGATATCAGATG 1252
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGCGAATGAAACTTGGGAATGGGTAAATCTTAAAGAGATATCTCCGGGAGATATCAGATG 839
Query 1253 GGAAGGTGAAGATCCTGG-GATTTCTCGTAAAGGAGGACATCCTGGGCAAGGCCGTGGAA 1311
||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 840 GGAAGGTGAGGATCCTGGCG-TTTCTCGTAAAGGAGGACATCCTGGGCAAGGCCGTGGAA 898
Query 1312 ---CAAAAACCATGGCTCGTGGTGGTCCTGCAAGCAATGCGGGTGGTAGAGGTAGGGGAA 1368
||||| |||||||||| |||||||| ||||||||||||| ||||||||||||||||
Sbjct 899 CTTCAAAATCCATGGCTCGCGGTGGTCCCACAAGCAATGCGGGGGGTAGAGGTAGGGGAA 958
Query 1369 GCATGAGGATGCAGCAACCTAAGACACAGAATGGCATCGGAAAGAAAGCTTTAGGCGAAA 1428
|||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 959 GCATGAAGATGCAGCAACCTAAGACACAGAATGGCATTGGGAAGAAAGCTTTAGGCGAAA 1018
Query 1429 TCGAAATTCTCCACACTGAGACATTGTTAAAAGAGGTGGAAAAAGTTTTTGGGTCAGTTA 1488
||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||
Sbjct 1019 TCGAAATTCTCCACACTGATACATTGATAAAAGAGGTAGAAAAAGTTTTTGGGTCAGTTA 1078
Query 1489 ACCCCAACCCAGCAGAGGTAGAGAAGGCAAAGAGAGTGCTGAGAGATCATGAACTAGCTC 1548
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1079 ACCCCAACCCAGCAGAGGTAGAGAAGGCGAAGAGAGTGCTGAGAGATCATGAACTAGCTC 1138
Query 1549 TTATGGATGCCATCGCAAAGCTTGAAGAAATATCAGATGGAGAAAGCGGTAATATTTGAT 1608
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1139 TTATGGATGCCATCGCAAAGCTTGAAGAAATATCAGACGGAGAAAGCGGTAATATTTGAT 1198
Query 1609 AGGGG-CTTTCT-AAATCTCCTCAGATGATGGAGCCGGAGCATTAGAGTTGCAAAAAGGT 1666
|||| | |||| |||||||||||||||||||||| ||||||||||| |||| |||||||
Sbjct 1199 -GGGGCCCTTCTAAAATCTCCTCAGATGATGGAGCTGGAGCATTAGACTTGCTAAAAGGT 1257
Query 1667 GTTGTAGATGGTGGTGGCAAAATGTGAATTGATGAGGGAGATTTGGAAACTTGTATGGAT 1726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GTTGTAGATGGTGGTGGCAAAATGTGAATTGATGAGGGAGATTTGGAAACTTGTATGGAT 1317
Query 1727 GGCAAAATGTATTTTGTTTAGGAGGGGGATTTGATGACATTTGTGTACCACATAACTCCA 1786
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1318 GGCAAAATGTATTTTGTTTAGGAGGGGGATTTGATGACATTTGTGTGCCACATAACTCCA 1377
Query 1787 AAAACTGGATTTGGAAATTAGGGTTCTTAAGCATTGTAAAATCCATAAGACTTGATATAA 1846
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1378 ATAACTGGATTTGGAAATTAGGGT-CTTAAGCATTGTAAAATCCATAAGACTTGATATAA 1436
Query 1847 ATGT 1850
||||
Sbjct 1437 ATGT 1440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69476606880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5