BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13030.1
Length=2141
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350459 jgi|Araly1|350459|fgenesh1_pg.C_scaffold_6001052 2916 0.0
Ahg488121 jgi|Araly1|488121|fgenesh2_kg.6__1255__AT5G13050.1 87.9 3e-16
> Ahg350459 jgi|Araly1|350459|fgenesh1_pg.C_scaffold_6001052
Length=1749
Score = 2916 bits (1579), Expect = 0.0
Identities = 1701/1759 (97%), Gaps = 11/1759 (1%)
Strand=Plus/Plus
Query 157 ATGGAATCTTCTCCGGCTTCTTCTTCGTCTCCGACGCCGGTAACCGATTCATCTGCTGAT 216
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGAATCTTCTCCGGCTTCGTCTTCGTCTCCGACGCCGGTAACCGATTCGTCTGCTGAT 60
Query 217 TCTTTAGCGAAAGATCTGCAGAATCAAAGTCTGGGAGCTGTTGATGAAGG-TGTTAAGAT 275
||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 61 ACTTTAGCGAAAGATCTGCAGAATCAAAGTCTTGGAGCTGTTGATGAAGGTTG-TAAGAT 119
Query 276 TAAAAAGAAGCTCGAAGATTTTAACTGGGACCATTCCTTTGTTAAGGAATTGCCTGGTGA 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TAAAAAGAAGCTCGAAGATTTTAACTGGGACCATTCCTTTGTTAAGGAATTGCCTGGTGA 179
Query 336 TCCTAGAACCGATGTTATCTCGCGTGAGGTATTACATGCTTGCTATTCAAAAGTTTCCCC 395
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 180 TCCCAGAACCGATGTTATCTCGCGTGAGGTATTACATGCTTGCTATTCAAAAGTTTCACC 239
Query 396 ATCAGTAGAAGTGGATGATCCTCAGCTTGTAGCATGGTCTGTCTCTGTTGCAGAGCTATT 455
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 ATCAGTAGAAGTAGATGATCCTCAGCTTGTAGCATGGTCTGAATCTGTTGCAGAGCTATT 299
Query 456 AGATTTGGATCCTAAAGAATTTGAAAGGCCAGATTTCCCTCTCATGTTGTCCGGCGCTAA 515
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 GGATTTGGATCCTAAAGAGTTTGAAAGGCCAGATTTCCCTCTCATGTTGTCCGGTGCTAA 359
Query 516 ACCTTTACCAGGAGCAATGTCTTATGCTCAATGCTATGGAGGACACCAGTTTGGCATGTG 575
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ACCTTTACCAGGAGCAATGCCTTATGCTCAATGCTATGGAGGACACCAGTTTGGCATGTG 419
Query 576 GGCTGGACAACTAGGGGATGGACGTGCCATTACTCTGGGAGAAGTTTTGAACTCCAAAGG 635
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 GGCTGGACAACTAGGTGATGGACGTGCCATAACTCTGGGAGAAGTTTTGAACTCCAAAGG 479
Query 636 TGAAAGATGGGAACTTCAGCTTAAAGGTGCGGGTAGAACTCCATATAGCCGTTTTGCTGA 695
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 TGAAAGATGGGAACTTCAGCTTAAAGGTGCGGGTAGGACTCCATATAGCCGTTTTGCTGA 539
Query 696 TGGCCTTGCAGTGCTCCGTAGTAGCATCAGGGAGTTCCTTTGCAGTGAAACTATGCATTG 755
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGGGCTTGCAGTGCTCCGTAGTAGCATCAGGGAGTTCCTTTGCAGTGAAACTATGCATTG 599
Query 756 TCTTGGGATCCCTACCACGCGTGCCCTTTGTCTTCTCACCACAGGTCAAAATGTCACTCG 815
|||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 600 TCTTGGAATCCCTACCACGCGCGCCCTTTGTCTTCTCACCACAGGTCAAGATGTCACTCG 659
Query 816 CGACATGTTTTATGATGGCAATCCGAAGGAAGAACCCGGCGCAATCGTTTGCAGGGTTTC 875
|||| || ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 660 CGAC-------AT--TGGCAATCCGAAGGAAGAACCTGGCGCAATCGTTTGCAGGGTTTC 710
Query 876 TCAGTCATTTCTACGCTTTGGGTCATACCAAATACATGCCTCTAGAGGAAAAGAGGATCT 935
|||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 711 TCAGTCATTTATCCGCTTTGGGTCATACCAAATACATGCTTCTAGAGGAAAAGAGGATCT 770
Query 936 TGATATTGTTCGTAAGTTGGCAGACTATGCCATTAAACATCATTTCCCACATATAGAGAG 995
||| |||||| | |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 771 TGACATTGTTAGGAAGTTGGCAGACTATGCCATTAGACATCATTTCCCACATATAGAGAG 830
Query 996 CATGGATAGAAGCGATAGCCTATCTTTCAAAACCGGTGATGAAGATGATTCGGTTGTGGA 1055
||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 831 CATGGATCGAAGCGATAGCTTGTCTTTCAAAACCGGTGATGAAGATGATTCGGTTGTGGA 890
Query 1056 TCTAACTTCCAACAAGTATGCAGCATGGATCGTTGAAATTGCTGAGCGTACAGCTACCTT 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 TCTAACTTCCAACAAGTATGCAGCATGGATCGTTGAAATTGCTGAGCGTACAGCTACCTT 950
Query 1116 AGTTGCAAGATGGCAAGGTGTAGGTTTCACCCATGGTGTGCTCAACACTGACAATATGAG 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 AGTTGCAAGATGGCAAGGTGTAGGTTTCACCCATGGTGTGCTCAACACTGACAATATGAG 1010
Query 1176 CATTTTGGGTCAAACCATTGACTATGGCCCATTTGGTTTCTTGGATGCTTTTGATCCAAG 1235
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1011 CATTTTGGGTCAAACCATTGACTATGGCCCATTTGGGTTCTTGGATGCTTTTGATCCAAG 1070
Query 1236 TTACACCCCAAACACGACAGATCTCCCAGGAAGAAGATACTGTTTTGCAAATCAGCCTGA 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 TTACACCCCAAACACGACAGATCTCCCAGGAAGAAGATACTGTTTTGCAAATCAGCCTGA 1130
Query 1296 CATCGGCTTGTGGAATATTGCTCAATTTTCTAAGACTCTGGCGGTTGCTCAACTGATAAA 1355
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1131 CATCGGCTTGTGGAATATTGCTCAATTTTCTAAGACTCTGGCGGTTGCTCAGCTGATAAA 1190
Query 1356 TCAAAAGGAGGCGAATTACGCCATGGAGAGGTACGGTGATAAATTCATGGATGAGTATCA 1415
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1191 TCAAAAGGAGGCGAATTACGCCATGGAAAGGTACGGTGATAAATTCATGGATGAGTATCA 1250
Query 1416 AGCCATAATGTCTAAGAAGCTTGGTCTTACCAAGTATAACAAGGAGGTCATTAGCAAACT 1475
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1251 AGCCATAATGTCAAAGAAGCTTGGTCTTTCCAAGTATAACAAGGAGGTCATTAGTAAACT 1310
Query 1476 TTTGAACAATATGTCTGTTGATAAAGTTGATTACACCAACTTCTTCCGGCTTCTTGCAAA 1535
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1311 TCTGAACAATATGTCTGTTGATAAAGTTGATTACACAAACTTCTTCCGGCTTCTTGCAAA 1370
Query 1536 TGTAAAAGCAAATCCCAACACACCCGAAAATGAGTTATTGAAACCCTTGAAAGCTGTGCT 1595
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1371 TGTAAAAGCAAATCCCAACACACCTGAAAATGAGTTATTGAAACCCTTGAAAGCTGTGCT 1430
Query 1596 CTTGGACATCGGAAAGGAGAGAAAAGAAGCATGGATCAAATGGATGAGAAGCTATATACA 1655
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1431 CTTGGACATCGGAAAGGAGAGAAAAGAAGCATGGATCAAATGGATGCGAAGCTATATACA 1490
Query 1656 AGAGGTGGGTGGTAGTGAGGTATCAGATGAAGAAAGAAAAGCAAGAATGGATTCAGTGAA 1715
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1491 AGAGGTGGGTGGTAGTGAGGTATCAGATGAAGAAAGAAAAGCAAGAATGGATTCGGTAAA 1550
Query 1716 CCCAAAGTACATTCTGAGGAACTATCTGTGCCAAAGTGCAATAGATGCAGCTGAACAAGG 1775
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1551 CCCAAAGTACATTCTGAGGAACTATCTGTGCCAAAGCGCAATAGATGCAGCTGAACAAGG 1610
Query 1776 CGATTTCTCAGAAGTCAACAATTTGATCCGTCTAATGAAACGTCCTTATGAGGAACAGCC 1835
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1611 CGATTTCTCAGAAGTCAACAATTTGATCCGTCTAATGAAACGGCCTTATGAGGAACAGCC 1670
Query 1836 GGGGATGGAGAAATATGCTCGGTTGCCTCCTGCCTGGGCTTACAGGCCAGGCGTCTGCAT 1895
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1671 GGGTATGGAGAAATATGCTCGGTTGCCTCCAGCCTGGGCTTACAGGCCAGGCGTCTGCAT 1730
Query 1896 GCTTTCTTGTTCCTCCTAG 1914
|||||||||||||||||||
Sbjct 1731 GCTTTCTTGTTCCTCCTAG 1749
> Ahg488121 jgi|Araly1|488121|fgenesh2_kg.6__1255__AT5G13050.1
Length=1198
Score = 87.9 bits (47), Expect = 3e-16
Identities = 59/65 (91%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 2011 ACAAGAAAAACTTTGCTGTTTTCAGGATTTTGTTTTTACATTGAATAAAGATTTGAGTAC 2070
||||||||||||| | ||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1198 ACAAGAAAAACTTCGATGTTTTCTCTAATTTGTTTTTACATTGAATAAAGATTTGAGTAC 1139
Query 2071 ATATA 2075
|||||
Sbjct 1138 ATATA 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80560868175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5