BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13070.1
Length=878
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488123 jgi|Araly1|488123|fgenesh2_kg.6__1257__AT5G13070.1 1243 0.0
> Ahg488123 jgi|Araly1|488123|fgenesh2_kg.6__1257__AT5G13070.1
Length=833
Score = 1243 bits (673), Expect = 0.0
Identities = 758/798 (95%), Gaps = 9/798 (1%)
Strand=Plus/Plus
Query 16 AACACCGCCATTGATTAGCTTCCTCTCTATTTTTACTCTCGTCACGTCCTCCACTTTTGG 75
|||||||||||||||| |||| | ||||| |||||||||||||||||||||| ||||||
Sbjct 1 AACACCGCCATTGATTTGCTT-C-CTCTA--TTTACTCTCGTCACGTCCTCCATTTTTGG 56
Query 76 GTCATTATTACTTCTCGAAGCTCACCAAGATCTTGAATTTGCCGACCTCTCAAGATTCTT 135
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 G---GTATTACTTCTCCAAGCTCACCAAGATCTTGAATTTGCCGACCTCTCAAGATTCTT 113
Query 136 GATGGTAAAAGCATACAGACAAGAGCATGTTTACAAGCATCCGTGGGAGCGGGTGAGTGC 195
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 114 GATGGTAAAAGCATACAGACAAGAGCATGTCTACAAGCATCCGTGGGAGCGGGTGAGTGC 173
Query 196 TGCTTCATGGAGGAAGTTTGCAGACCCTGAAAACAAACGCATCCTTTCTCACATCCTTGA 255
||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 174 TGCCTCATGGAGGAAGTTTGCAGACCCTGAAAACAAACGCATCCTTTCGCATATCCTTGA 233
Query 256 AGTCGATACCTTGAACAGGAAACTCGACACTGAGACCGGGAAACTCCACACCACGCGTGC 315
|||||||||||||||| | ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 234 AGTCGATACCTTGAACCGTAAACTTGACACTGAGACCGGGAAACTCCACACCACACGTGC 293
Query 316 TCTCACCATCCATGCTCCTGGTCCATGGTTTCTCCATAGGATCATTGGTCAGGACATCTG 375
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 294 TCTCACCATCCATGCTCCTGGTCCATGGTTTCTCCACAGGATCATTGGCCAGGACATTTG 353
Query 376 TCACTGTGTTGAATCAACAGTTGTAGATGGCAAATCACGTTCTATGCAGCTAACAACAAA 435
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 354 TCACTGTGTTGAATCAACAGTTGTGGATGGCAAATCACGTTCTATGCAGCTAACAACAAA 413
Query 436 GAACATTAGTCTCAAAAAGTTCATTGAAGTGGAGGAGAGGATAAGATATGATCCGCATCC 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GAACATTAGTCTCAAAAAGTTCATTGAAGTGGAGGAGAGGATAAGATATGATCCGCATCC 473
Query 496 AGATAATCCATCAGCCTGGACTGTTTGTAGCCAGGAGACAAGCATTCGGATCAAACCCTT 555
||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 AGAAAATCCGTCGGCCTGGACTGTTTGTAGCCAGGAGACAAGCATTCGGATCAAACCCTT 533
Query 556 GTCGGCTCTGGCCTCAATGGCTGAGAAGGTTGAACAGAAGTGCGCAGAGAAATTCATGCA 615
||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 534 GTCGGCTCTGGCCTCAATGGCTGAGAAAGTTGAACAAAAGTGCGCCGAGAAATTCATGCA 593
Query 616 GAATAGCGCTAAAGGAAGAGAGGTTATGGAGAGGATTTGTAAGTATATGGAAGCAGAATC 675
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GAATAGCGTTAAAGGACGAGAGGTTATGGAGAGGATTTGTAAGTATATGGAAGCAGAATC 653
Query 676 CGCTCGGATCTAAAGATCAAAACTTCTTAGATTCCAGTATCTTCTTGGTTTGTGATTCTT 735
|||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 654 CGCTCGGATCTAAAGATCCAAACTTCTTAGATTCCAATATCTTCTTGGTTTTTGATTCTT 713
Query 736 GAATGTTTTGTAAGTCAAGAGAG-CTACGTTTTTGGAGCATGGTTATAATAAGTTTATGA 794
|||||||||||||||||| | || |||||||||||||||||||| ||||||||||||||
Sbjct 714 GAATGTTTTGTAAGTCAAAA-AGGCTACGTTTTTGGAGCATGGTAATAATAAGTTTATGG 772
Query 795 AACAGTTTAGATCAAATT 812
|||||||||||| |||||
Sbjct 773 AACAGTTTAGATGAAATT 790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32518848201
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5