BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13080.1
Length=757
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488124 jgi|Araly1|488124|fgenesh2_kg.6__1258__AT5G13080.1 1022 0.0
> Ahg488124 jgi|Araly1|488124|fgenesh2_kg.6__1258__AT5G13080.1
Length=668
Score = 1022 bits (553), Expect = 0.0
Identities = 638/677 (94%), Gaps = 14/677 (2%)
Strand=Plus/Plus
Query 7 ATATCTTAACAAACTCCAATCAATTATCAAACAAAAAGAGAGG-AACAAAATTCTTCTTC 65
||||||||||||| ||||||||||||||||||||||||||||| || |||| |||||||
Sbjct 1 ATATCTTAACAAAGTCCAATCAATTATCAAACAAAAAGAGAGGAAAAAAAAACCTTCTTC 60
Query 66 TTTTGGAATTCAGGTGGATCGGTCTGTCTCGTTGTTATAATCAAGATTCCACAAATAATT 125
||||||||||||||||||| |||||| || ||| || |||||||||||||| ||||
Sbjct 61 TTTTGGAATTCAGGTGGATTGGTCTG--TC----TTACAA-CAAGATTCCACAAACAATT 113
Query 126 AGGAATATGGAGGGATATGATAATGGGTCGTTGTATGCTCCTTTTTTGTCGTTGAAATCT 185
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 114 AGAAATATGGAGGGATATGATAATGGGTCGTTGTATGCTCCGTTTTTGTCGTTGAAATCT 173
Query 186 CATTCGAAACCAGAGCTGCATCAAGGCG-A--AGAAGAGAGCTCAAAGGTTAGATCAGAA 242
||||| ||||| ||| |||||||||||| | ||||||| ||||||||||||||||||||
Sbjct 174 CATTCAAAACCGGAGATGCATCAAGGCGAATTAGAAGAGGGCTCAAAGGTTAGATCAGAA 233
Query 243 GGTTGTTCGAAAAGCGTGGAGTCGTCGAAAAAGAAGGGGAAGAAACAAAGGTATGCGTTT 302
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 GGTTGTTCGAGAAGCGTGGAGTCGTCGAAAAAGAAGGGGAAGAAACAAAGGTATGCGTTT 293
Query 303 CAAACAAGGAGCCAAGTGGATATTCTTGATGATGGTTATCGATGGAGGAAATATGGCCAA 362
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 CAGACAAGGAGCCAAGTGGATATTCTTGATGATGGTTATCGATGGAGGAAATATGGCCAA 353
Query 363 AAGGCCGTCAAGAACAACAAGTTCCCTAGGAGTTACTATAGGTGTACATATGGAGGATGC 422
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 354 AAGGCCGTCAAGAACAACAAGTTCCCTAGGAGTTACTATAGGTGCACATATGGAGGATGC 413
Query 423 AATGTGAAGAAGCAAGTGCAAAGATTAACAGTGGACCAAGAAGTGGTCGTGACAACCTAC 482
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 AACGTGAAGAAGCAAGTGCAAAGATTAACAGTGGACCAAGAAGTGGTCGTGACAACCTAC 473
Query 483 GAAGGAGTGCATTCGCATCCCATCGAGAAATCCACCGAAAACTTCGAGCATATTCTCACT 542
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 474 GAAGGAGTGCATTCGCATCCCATTGAGAAATCCACCGAAAACTTCGAGCATATTCTCACT 533
Query 543 CAAATGCAAATCTACTCTTCTTTCTAGTTAATTCTCTCAAAATCTTTTATACCTTATTTT 602
|||||||||||||||||||||||||| || |||||||||| |||||||||||||| |||
Sbjct 534 CAAATGCAAATCTACTCTTCTTTCTAATTG-TTCTCTCAAA-TCTTTTATACCTTAATTT 591
Query 603 AGAGCCTATAATTCTTAGAGCTCATGTTGTAAATTATTTACAAAAATTAGAATGT-TACA 661
||||||||||||||||||||||||||||||||||||||| | |||||||| ||| ||||
Sbjct 592 GGAGCCTATAATTCTTAGAGCTCATGTTGTAAATTATTTATACAAATTAGAGTGTATACA 651
Query 662 TTTTACGTGTGTTGAAA 678
|||||||||||||||||
Sbjct 652 TTTTACGTGTGTTGAAA 668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27905975244
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5