BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13090.1
Length=1088
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488125 jgi|Araly1|488125|fgenesh2_kg.6__1259__AT5G13090.1 1182 0.0
> Ahg488125 jgi|Araly1|488125|fgenesh2_kg.6__1259__AT5G13090.1
Length=974
Score = 1182 bits (640), Expect = 0.0
Identities = 842/930 (91%), Gaps = 51/930 (5%)
Strand=Plus/Plus
Query 105 CATGAAAATGAAGAAGAAAGGAAAAGTTTATCCATctcctcctcctcctcctcAATCTTC 164
|||||||||||||||||||||||||||||| |||||||||||| || |||| |||||
Sbjct 1 CATGAAAATGAAGAAGAAAGGAAAAGTTTACCCATCTCCTCCT-CT--TCCT---TCTTC 54
Query 165 ATCATCTTCTTCTTCTTCGAACCATCTCAACGAAGAAGATGATGATTCTCTCTCTGTGTT 224
||| || |||||||| | ||||||||||||||||| |||||||||||||||||||||||
Sbjct 55 ATCTTCCTCTTCTTCGGCTAACCATCTCAACGAAGATGATGATGATTCTCTCTCTGTGTT 114
Query 225 GAAGCTTCTTCCAGCGACGATTTTGGTTCTTGTTTCTGTTCTCTCCTCTGAAGAAAGAGA 284
||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 115 GAAGCTTCTTCCAGCAACGATTTTGGTTCTCGTTTCTGTTCTCTCAGCTGAAGAAAGAGA 174
Query 285 GGTTCTTGCTTACTTAATCACAAGAGGAACCACCATTTCCGATAGAGGAAACTCTTCTTC 344
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 175 AGTTCTTGCTTACTTAATCACAAGAGGAACCACCATTTCCGATAGAGGGAACTCTTCTTC 234
Query 345 AAAGAAT---AAGACGAAGAAGAAGAG---CAACAAATCTAG-CAAAAATCACAAGCCAC 397
|||||| ||||||||||||||||| |||||||||| | |||||||||||||||||
Sbjct 235 GAAGAATAACAAGACGAAGAAGAAGAGCAACAACAAATCT-GCCAAAAATCACAAGCCAC 293
Query 398 CAGTTTTCGATTGTGAGTGTTTCGATTGTTACACTAACTACTGGTTTCGTTGGGATTCTT 457
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 294 CAGTTTTCGATTGTGAGTGTTTCGATTGTTACACTAACTACTGGTTTCGTTGGGATTCAT 353
Query 458 CGCCGAATCGTGAGCTTATCCATGAAATCATCGAAGCTTTCGAG-A--ATCA--TCAC-- 510
|||||||||| ||||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 354 CGCCGAATCGCGAGCTTATCCATGAAATCATCGAAGCTTTCGAGAATCATCATCTCACTA 413
Query 511 --GGTGAAGAAAACTCTGCTTCTCGGAGCAAATCTAAGAGAGGTAAGAAGAAAGAGAAAC 568
|||||| ||||||| |||||||| | ||||||||||||||||||||||||||||||||
Sbjct 414 GTGGTGAACAAAACTCCGCTTCTCGCAACAAATCTAAGAGAGGTAAGAAGAAAGAGAAAC 473
Query 569 CGGGTCGTCGGGTCACTGATTCGGATAGTAA-A-----CCGGCTCTTCGGGTCACG-GAT 621
||||||||||||||||||||||||||||||| | |||| ||||||||| | | |||
Sbjct 474 CGGGTCGTCGGGTCACTGATTCGGATAGTAATAATAAACCGGGTCTTCGGGTTA-GTGAT 532
Query 622 AATGGTGATAAGGATTCTAAACCCGTCGTGGAGCCAATGAAC-GAGACCACTGTTTCCGA 680
||| |||||||| ||||||||||||||| |||||||||| | |||||||||||||||||
Sbjct 533 GATGATGATAAGGTTTCTAAACCCGTCGTCGAGCCAATGA-CTGAGACCACTGTTTCCGA 591
Query 681 GAGTAGCCACGTGTCGTCACCAGTTAGATTGAGTGAAGCTGAGGTGGCAGAAGGAGAACC 740
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||
Sbjct 592 GAGTAGCCACGTGTCGTCACCAGATAGATTGAGTGAAGCTGAGGTGGCGGAAGGAGAGCC 651
Query 741 GGAGGATGAGATTGTTGTTGAAGAAGATG-G-ACA-AG-AAGAAGAATCGACGGTGGTGG 796
||||||||||||||||||||||||||| | | | | || ||||||||||||||||||| |
Sbjct 652 GGAGGATGAGATTGTTGTTGAAGAAGACGAGGA-AGAGGAAGAAGAATCGACGGTGGTTG 710
Query 797 TTTTTCCGGCGGCGGCGAGTAATGTGACGGGACACAAAGGG-TTGGCGAGGAAGGTATTA 855
||||| ||||||||||||||| ||||||||||||||| ||| |||||||||||||||||
Sbjct 711 TTTTTGCGGCGGCGGCGAGTACTGTGACGGGACACAA-GGGATTGGCGAGGAAGGTATTG 769
Query 856 CCGGACGTGTTGGGTTTGTTCCATTCCAATTTTTGGAGGCTTTGGAATCCGAACGCGTAA 915
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 770 CCGGACGTGTTGGGTTTGTTCAATTCCAATTTTTGGAGGCTTTGGAATCCGAACGCATAA 829
Query 916 AAGCATCGACCGGAAAAAAGTTATGCtttttttaatttttttGTTGTTGCTGTTTTC--A 973
|||||||||||||||||| |||||||||||||| ||||| |||||| |||||||| |
Sbjct 830 AAGCATCGACCGGAAAAA-GTTATGCTTTTTTT--TTTTT--GTTGTTACTGTTTTCTCA 884
Query 974 GGAAAAA--TA-A-TCTCATCTTTTGCTTT 999
||||||| || | ||||||||||||||||
Sbjct 885 GGAAAAAAATATAATCTCATCTTTTGCTTT 914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40524660771
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5