BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13110.1
Length=2112
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940776 jgi|Araly1|940776|scaffold_601320.1 2933 0.0
Ahg921758 jgi|Araly1|921758|scaffold_103039.1 1823 0.0
> Ahg940776 jgi|Araly1|940776|scaffold_601320.1
Length=1835
Score = 2933 bits (1588), Expect = 0.0
Identities = 1745/1821 (96%), Gaps = 10/1821 (1%)
Strand=Plus/Plus
Query 135 TTTGACGATGGCGGCTTTGTCTTCCTCCGTCACCACCCGATCATATC-ATTCCGGTTATT 193
||||||||||||| |||||||||||||||||||| |||||||||| | |||||||||||
Sbjct 15 TTTGACGATGGCGTCTTTGTCTTCCTCCGTCACCTCCCGATCATA-CTTTTCCGGTTATT 73
Query 194 TGGCTTCTTTCT-CACCGGTTAACGGTGACCGACATCGATCACTCTCGTTCCTGTCTGCT 252
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 CGGCTTCTTT-TACACCGGTTAACGGTGACCGACATCGATCACTCTCGTTCCTGTCTGCT 132
Query 253 TCTCCTCAAGGATTGAATCCTCTTGACCTCTGTGTTAGATTCCAGAGGAAGTCTGGTCGT 312
|||||||||||||||||| ||| |||| | ||| |||||||||| ||||| |||||||||
Sbjct 133 TCTCCTCAAGGATTGAATTCTCATGACTTATGTCTTAGATTCCAAAGGAAATCTGGTCGT 192
Query 313 GCTTCTGTCTTTATGCAAGATGGTGCAATAGTCACTAATTCAAATTCATCAGAGAGTAAA 372
|||||||||||||||||||||||||||||| || | |||||||||||| |||||||||||
Sbjct 193 GCTTCTGTCTTTATGCAAGATGGTGCAATAATCGCCAATTCAAATTCAACAGAGAGTAAA 252
Query 373 ACTTCTCTTAAGGGATTGAAAGATGAGGTGCTATCAGCTTTATCTCAAGAAGCAGCCAAG 432
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 TCTTCTCTTAAGGGATTGAAAGATGAGGTGCTATCAGCTTTATCTCAAGAAGCAGCCAAG 312
Query 433 GTTGGAGTAGAATCTGATGGTCAAAGCCAGTCAACAGTTAGTATTACGGTGGTTGGAGCC 492
|||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 313 GTTGGAGTCGAATCTGATGGTCAAAGCCAGTCAACAGTTAGTATCACGGTTGTTGGAGCC 372
Query 493 TCTGGTGATCTTGCTAAGAAGAAGATTTTCCCGGCTCTTTTCGCCCTTTACTATGAAGGT 552
|| ||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
Sbjct 373 TCCGGTGATCTTGCCAAAAAGAAGATTTTCCCGGCTCTTTTCGCCCTTTACTATGAAGAT 432
Query 553 TGTC-TCCCTGAGCATTTTACAATATTTGGATATTCTAGGAGTAAGATGACAGATGTTGA 611
|||| |||| ||||||||||| ||||| || ||||||||||||||||||||||||| |||
Sbjct 433 TGTCTTCCC-GAGCATTTTACGATATTCGGTTATTCTAGGAGTAAGATGACAGATGCTGA 491
Query 612 ACTTAGAAACATGGTCAGCAAAACCCTCACTTGCAGAATTGATAAGAGGGCAAACTGTGG 671
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 492 ACTTAGAAACATGGTCAGCAAAACCCTTACATGCAGAATTGATAAGAGGGCAAACTGTGG 551
Query 672 TGAAAAGATGGAAGAATTTCTCAAGAGATGTTTTTACCATTCTGGTCAGTATGATTCTCA 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 552 TGAAAAGATGGAAGAATTTCTCAAGAGATGTTTTTACCATTCTGGTCAGTATGATTCGCA 611
Query 732 GGAACATTTTACTGAATTGGATAAGAAGCTCAAGGAACATGAGGCTGGAAGAATCTCAAA 791
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 612 GGAACATTTTACTGAATTGGACAAGAAGCTCAAGGAACATGAGGCTGGAAGAATCTCAAA 671
Query 792 CCGCCTCTTTTATTTGTCTATCCCTCCAAATATATTTGTAGATGCTGTGAAATGTGCAAG 851
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 672 TCGCCTCTTTTATTTGTCTATCCCTCCAAATATATTTGTTGATGCTGTGAAATGTGCAAG 731
Query 852 CACTTCTGCTTCATCTGTCAATGGATGGACTAGGGTTATCGTCGAGAAACCTTTTGGTCG 911
||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 732 CACATCTGCTTCATCTGTCAATGGATGGACTAGGGTCATTGTCGAGAAACCTTTTGGTCG 791
Query 912 AGATTCTGAAACCTCGGCTGCTTTAACGAAATCCCTCAAGCAGTATTTGGAGGAAGATCA 971
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 792 AGATTCTGAAACCTCTGCTGCTTTAACGAAATCCCTTAAGCAGTATTTGGAGGAAGATCA 851
Query 972 AATTTTTAGGATAGACCATTACCTAGGAAAGGAGCTAGTCGAGAACTTATCTGTTCTTCG 1031
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 852 AATTTTTAGGATAGACCATTACCTAGGAAAAGAGCTAGTCGAGAACTTATCTGTTCTTCG 911
Query 1032 ATTCTCAAACCTTATATTTGAGCCGCTATGGTCAAGGCAGTACATAAGGAACGTGCAATT 1091
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 912 ATTCTCAAACCTTATATTTGAGCCGCTATGGTCAAGGCAGTATATAAGAAACGTGCAATT 971
Query 1092 TATATTTTCTGAGGATTTCGGCACTGAAGGACGTGGAGGGTACTTTGACAATTACGGAAT 1151
|||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 972 TATATTTTCTGAGGATTTTGGCACTGAAGGACGAGGAGGGTACTTCGACAATTACGGCAT 1031
Query 1152 AATAAGAGATATAATGCAGAATCATCTGCTTCAAATCTTAGCCCTCTTTGCCATGGAAAC 1211
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1032 AATAAGAGATATAATGCAGAATCATCTGCTTCAAATCCTAGCCCTCTTTGCCATGGAAAC 1091
Query 1212 GCCTGTTAGTTTGGATGCAGAGGATATCAGAAATGAAAAGGTTAAGGTGTTACGTTCAAT 1271
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1092 GCCTGTTAGTTTGGATGCAGAGGACATCAGAAACGAAAAGGTTAAGGTGTTACGTTCAAT 1151
Query 1272 GAGGCCAATTCGAGTTGAAGATGTGGTAATAGGACAATACAAGAGCCACACAAAGGGAGG 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 GAGGCCAATTCGAGTTGAAGATGTGGTAATAGGACAATACAAGAGCCACACAAAGGGAGG 1211
Query 1332 AGTCACATATCCTGCCTACACCGATGATAAAACTGTACCAAAAGGTAGTCTGACTCCAAC 1391
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1212 AGTGACATATCCTGCCTACACCGATGATAAAACTGTACCAAAAGGTAGTCTGACTCCGAC 1271
Query 1392 ATTTGCAGCTGCTGCTCTTTTCATCGACAATGCAAGATGGGACGGTGTGCCCTTTT-TAA 1450
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1272 ATTTGCAGCTGCTGCTCTTTTCATCGACAATGCAAGATGGGACGGTGTG-CCTTTTCTAA 1330
Query 1451 TGAAAGCGGGCAAAGCACTACACACCAGGAGTGCAGAGATAAGGGTGCAGTTCAGGCATG 1510
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1331 TGAAAGCTGGCAAAGCACTACACACCAGGAGTGCAGAGATAAGGGTGCAGTTCAGGCATG 1390
Query 1511 TTCCGGGGAATTTGTATAACCGGAATACTGGTTCTGATCTTGATCAAGCTACAAATGAGC 1570
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 TTCCGGGGAATTTGTATAATCGGAATACTGGTTCTGATCTTGATCAAGCTACAAATGAGC 1450
Query 1571 TTGTGATCCGTGTCCAACCAGATGAAGCAATCTATTTGAAAATCAACAACAAGGTCCCTG 1630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1451 TTGTGATCCGTGTCCAACCAGATGAAGCAATCTATTTGAAAATCAACAACAAGGTCCCTG 1510
Query 1631 GTTTAGGAATGAGATTAGATCGCAGTAACTTGAATCTTCTATACTCAGCAAGGTATTCAA 1690
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1511 GTTTAGGGATGAGATTAGATCGCAGTAACTTGAATCTTTTATACTCAGCAAGGTATTCAA 1570
Query 1691 AGGAGATACCAGATGCATATGAGAGGCTTCTGTTAGATGCAATAGAAGGAGAAAGAAGAT 1750
||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| |
Sbjct 1571 AGGAGATACCAGATGCATATGAGAGACTTCTGCTAGATGCAATTGAAGGAGAAAGAAGGT 1630
Query 1751 TGTTCATAAGAAGTGACGAGCTTGATGCAGCTTGGTCGCTATTCACTCCATTGCTTAAAG 1810
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1631 TGTTCATAAGAAGTGATGAGCTTGATGCAGCTTGGTCTCTATTCACTCCATTGCTTAAAG 1690
Query 1811 AGATTGAAGAGAAGAAGAGAATCCCTGAGTACTATCCTTATGGTAGCCGTGGTCCTGTTG 1870
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1691 AGATAGAAGAGAAGAAGAGAATCCCTGAGTACTATCCTTATGGTAGCCGTGGTCCTGTTG 1750
Query 1871 GTGCTCATTATCTAGCTGCTAAACACAAGGTGCAATGGGGTGACGTCAGTATTGACCAGT 1930
||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct 1751 GTGCTCACTATCTAGCTGCTAAGCACAAGGTGCAATGGGGTGACGTTAGCATTGACCAGT 1810
Query 1931 AAAACATTTTCT-TGTT-TGT 1949
||||||| |||| |||| |||
Sbjct 1811 AAAACATATTCTCTGTTGTGT 1831
> Ahg921758 jgi|Araly1|921758|scaffold_103039.1
Length=1848
Score = 1823 bits (987), Expect = 0.0
Identities = 1350/1526 (88%), Gaps = 21/1526 (1%)
Strand=Plus/Plus
Query 421 GAAGCAGCCAAGGTTGGAGTAGAATCTGAT---GGTCAA-AGCCAGTCAACAGTTAGTAT 476
||||| | |||||||| || ||| |||||| ||| || | |||||||||||| |||||
Sbjct 314 GAAGCTGACAAGGTTGTAGCAGAGTCTGATGGCGGTGAACA-CCAGTCAACAGTCAGTAT 372
Query 477 TACGGTGGTTGGAGCCTCTGGTGATCTTGCTAAGAAGAAGATTTTCCCGGCTCTTTTCGC 536
|||||||| |||||||||||||||||||| |||||||| || ||||| |||||||||||
Sbjct 373 CACGGTGGTGGGAGCCTCTGGTGATCTTGCCAAGAAGAAAATATTCCCAGCTCTTTTCGC 432
Query 537 CCTTTACTATGAAGGTTGTCTCCCTGAGCATTTTACAATATTTGGATATTCTAGGAGTAA 596
|||||||||||||| ||||| |||||||||||||||||||| || ||| | ||||||||
Sbjct 433 ACTTTACTATGAAGGCTGTCTTCCTGAGCATTTTACAATATTCGGCTATGCAAGGAGTAA 492
Query 597 GATGACAGATGTTGAACTTAGAAACATGGTCAGCAAAACCCTCACTTGCAGAATTGATAA 656
||||||||||| ||||||| || | ||||| |||||||| || || || |||||||||||
Sbjct 493 GATGACAGATGCTGAACTTCGAGATATGGTTAGCAAAACACTGACATGTAGAATTGATAA 552
Query 657 GAGGGCAAACTGTGGTGAAAAGATGGAAGAATTTCTCAAGAGATGTTTTTACCATTCTGG 716
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 553 GAGGGCAAACTGCGGTGAAAAGATGGAAGAGTTTCTCAAGAGATGTTTTTACCATTCTGG 612
Query 717 TCAGTATGATTCTCAGGAACATTTTACTGAATTGGATAAGAAGCTCAAGGAACATGAGGC 776
||||||||||||||||||||||||| || |||||| ||||||||||||| |||||||
Sbjct 613 TCAGTATGATTCTCAGGAACATTTTGTTGCATTGGACGAGAAGCTCAAGGAGCATGAGGG 672
Query 777 TGGAAGAATCTCAAACCGCCTCTTT-TAT-TTGTCTATCCCTCCAAATATATTTGTAGAT 834
||||||| | || |||||||| ||| ||| || || |||||||||||||| ||||| ||
Sbjct 673 TGGAAGACTTTCGAACCGCCT-TTTCTATCTT-TCAATCCCTCCAAATATCTTTGTTGAC 730
Query 835 GCTGTGAAATGTGCAAGCACTTCTGCTTCATCTGTCAATGGATGGACTAGGGTTATCGTC 894
|| ||||||||||||||| | |||||||||||||||||||||||||||||||| || |||
Sbjct 731 GCGGTGAAATGTGCAAGCTCATCTGCTTCATCTGTCAATGGATGGACTAGGGTCATTGTC 790
Query 895 GAGAAACCTTTTGGTCGAGATTCTGAAACCTCGGCTGCTTTAACGAAA-TCCCTCAAGCA 953
|||||||||||||| || ||| | ||||||| ||||||||||| ||| || || |||||
Sbjct 791 GAGAAACCTTTTGGCCGTGATGCCAAAACCTCAGCTGCTTTAAC-AAAGTCTCTTAAGCA 849
Query 954 GTATTTGGAGGAAGATCAAATTTTTAGGATAGACCATTACCTAGGAAAGGAGCTAGTCGA 1013
||| |||||||||| ||||| |||||||||||||||||| |||||||||||||||| ||
Sbjct 850 GTACCTGGAGGAAGACCAAATATTTAGGATAGACCATTACTTAGGAAAGGAGCTAGTTGA 909
Query 1014 GAACTTATCTGTTCTTCGATTCTCAAACCTTATATTTGAGCCGCTATGGTCAAGGCAGTA 1073
|||||| || ||||||||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct 910 GAACTTGTCGGTTCTTCGATTCTCAAATCTTATATTTGAACCGTTATGGTCAAGGCAGTA 969
Query 1074 CATAAGGAACGTGCAATTTATATTTTCTGAGGATTTCGGCACTGAAGGACGTGGAGGGTA 1133
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 970 TATAAGGAACGTGCAATTCATATTTTCTGAGGATTTCGGCACTGAAGGACGCGGAGGGTA 1029
Query 1134 CTTTGACAATTACGGAATAATAAGAGATATAATGCAGAATCATCTGCTTCAAATCTTAGC 1193
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1030 CTTTGACAATTACGGAATAATAAGAGATATAATGCAGAATCATCTGCTTCAGATATTAGC 1089
Query 1194 CCTCTTT-GCCATGGAAACGCCTGTTAGTTTGGATGCAGAGGATATCAGAAATGAAAAGG 1252
|| ||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1090 TCT-TTTCGCCATGGAAACACCTGTGAGTTTGGATGCAGAGGATATCAGAAATGAAAAGG 1148
Query 1253 TTAAGGTGTTACGTTCAATGAGGCCAATTCGAGTTGAAGATGTGGTAATAGGACAATACA 1312
| ||||| ||||||||||||||||||| | | ||||||||||||| |||||||| ||||
Sbjct 1149 TAAAGGTACTACGTTCAATGAGGCCAATACAACTTGAAGATGTGGTGATAGGACAGTACA 1208
Query 1313 AGAGCCACA-CAAAGGGAGGAGTCACATATCCTGCCTACACCGATGATAAAACTGTACCA 1371
||||||||| || ||| ||||||||| ||||| | ||| || |||||||||||||| |||
Sbjct 1209 AGAGCCACAGCATAGG-AGGAGTCACTTATCCAGGCTATACTGATGATAAAACTGTGCCA 1267
Query 1372 AAAGGTAGTCTGACTCCAACATTTGCAGCTGCTGCTCTTTTCATCGACAATGCAAGATGG 1431
|||||||| ||||| || ||||||||||||||||| || |||||||||||||||||||||
Sbjct 1268 AAAGGTAGCCTGACCCCGACATTTGCAGCTGCTGCACTCTTCATCGACAATGCAAGATGG 1327
Query 1432 GACGGTGTGCCCTTTT-TAATGAAAGC-GGGCAAAGCACTACACACCAGGAGTGCAGAGA 1489
|| || || || |||| |||||||||| ||| ||||||||| ||||| ||||||| ||||
Sbjct 1328 GATGGCGTACC-TTTTCTAATGAAAGCTGGG-AAAGCACTAAACACCCGGAGTGCGGAGA 1385
Query 1490 TAAGGGTGCAGTTCAGGCATGTTCCGGGGAATTTGTATAACCGGAATACTGGTTCTGATC 1549
|||||||||||||||||||||| || || ||||| |||||||||||| ||||| ||||||
Sbjct 1386 TAAGGGTGCAGTTCAGGCATGTGCCTGGAAATTTATATAACCGGAATTCTGGTACTGATC 1445
Query 1550 TTGATCA-AGCTACAAATGAGCTTGTGATCCGTGTCCAACCAGATGAAGCAATCTATTTG 1608
|||| || | | |||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 1446 TTGACCAGACC-ACAAATGAGCTTGTCATCCGCGTCCAACCAGATGAAGCTATCTATTTG 1504
Query 1609 AAAATCAACAACAAGGTCCCTGGTTTAGGAATGAGATTAGATCGCAGTAACTTGAATCTT 1668
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1505 AAAATCAACAACAAGGTCCCTGGTTTAGGAATGAGATTAGATCGGAGTAACTTAAATCTT 1564
Query 1669 CTATACTCAGCAAGGTATTCAAAGGAGATACCAGATGCATATGAGAGGCTTCTGTTAGAT 1728
|| || ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1565 CTTTATTCAGCAAGGTATTCAAAGGAGATTCCAGATGCATATGAGAGGCTTTTGTTAGAT 1624
Query 1729 GCAATAGAAGGAGAAAGAAGATTGTTCATAAGAAGTGACGAGCTTGATGCAGCTTGGTCG 1788
|| || ||||| ||| | || |||||||||||||| || || |||||||| |||||| ||
Sbjct 1625 GCGATCGAAGGCGAACGCAGGTTGTTCATAAGAAGCGATGAACTTGATGCTGCTTGGGCG 1684
Query 1789 CTATTCACTCCATTGCTTAAAGAGATTGAAGAGAAGAAGAGAATCCCTGAGTACTATCCT 1848
|| |||||||||||||| |||||||| ||||| ||||||| |||||| || | |||||||
Sbjct 1685 CTTTTCACTCCATTGCTCAAAGAGATAGAAGAAAAGAAGACAATCCCAGAATTCTATCCT 1744
Query 1849 TATGGTAGCCGTGGTCCTGTTGGTGCTCATTATCTAGCTGCTAAACACAAGGTGCAATGG 1908
|| || || |||||||| || ||||| ||||||||||| || ||||||||||| ||||||
Sbjct 1745 TACGGCAGTCGTGGTCCAGTCGGTGCCCATTATCTAGCCGCAAAACACAAGGTCCAATGG 1804
Query 1909 GGTGACGTCAGTATTGACCAGTAAAA 1934
|| ||| | ||| | || |||| |||
Sbjct 1805 GGAGACCTAAGTCTGGATCAGTGAAA 1830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79456251070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5