BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13120.1
Length=1055
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488128 jgi|Araly1|488128|fgenesh2_kg.6__1262__AT5G13120.1 1064 0.0
> Ahg488128 jgi|Araly1|488128|fgenesh2_kg.6__1262__AT5G13120.1
Length=1051
Score = 1064 bits (576), Expect = 0.0
Identities = 616/635 (97%), Gaps = 4/635 (1%)
Strand=Plus/Plus
Query 53 TTTTGAGCTCCAATGGCGACCTTGTCGATGACTCTGTCAAATCCGAAGTCGCTCTCAGCT 112
|||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1 TTTTGAGCTCCAATGGCGGCCTTATCGATGACTCTGTCAAATCCGAAGTCGCTGTCAGCT 60
Query 113 CCTCCACGAAGACTTTCTCCGATCAATACCTCCGCTTTCACATCTACCTCTTTCCGATTG 172
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 GCTCCACGAAGACTTTCTCCGATCAATACCTCCGCTCTCACATCTACCTCTTTCCGATTG 120
Query 173 CGCACCAAATCTTCCTTCGATTCAATCTCGTTCTCGTCTTCAACTCCCTTCTCCGCCTCA 232
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 CGCACCAAATCTTCCTTCGATTCAATCTCGTTCTCGTCTTCAACTCCCTTCTCCGCGTCA 180
Query 233 TCGCTCCTCCTTCACACGTCTTATACCAAAAGAAACCACCGCTGTTTCTCTG-TTCAATC 291
|||||||||||||||||||||| ||||||||||||||||||||| ||||| | |||||||
Sbjct 181 TCGCTCCTCCTTCACACGTCTTCTACCAAAAGAAACCACCGCTGCTTCTC-GATTCAATC 239
Query 292 CAATGCTGAGGTGGTTA-CTGAACCGCAATCGAAAATAACACACAAGGTGTATTTCGATA 350
|||| ||||| | |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAATTCTGAGATTGTTAGC-GAACCGCAATCGAAAATAACACACAAGGTGTATTTCGATA 298
Query 351 TAAGTGTTGGCAATCCAGTGGGGAAGTTAGCTGGGAGGATTGTTATTGGATTGTATGGTG 410
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TAAGTGTTGGAAATCCAGTGGGGAAGTTAGCTGGGAGGATTGTTATTGGATTGTATGGTG 358
Query 411 ATGATGTTCCCCAAACTGTGGAGAACTTTCGTGCTCTATGCACAGGTGAAAAGGGATTTG 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ATGATGTTCCCCAAACTGTGGAGAACTTTCGTGCTCTATGCACAGGTGAAAAGGGATTTG 418
Query 471 GCTACAAGGGTTCTACATTCCATCGTGTCATCAGAGATTTCATGATTCAGGGAGGAGACT 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GCTACAAGGGTTCTACATTCCATCGTGTCATCAGAGATTTCATGATTCAGGGAGGAGACT 478
Query 531 TTGAGAAGGGCAATGGAACTGGAGGTAAAAGTGTATATGGCCGTACATTCAAGGATGAGA 590
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTGAAAAGGGCAATGGAACTGGAGGTAAAAGTGTATATGGCCGTACATTCAAGGATGAGA 538
Query 591 ATTTCAAGTTATCCCATGTCGGACCAGGAGTTCTAAGTATGGCAAATGCTGGCCCTAATA 650
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 539 ATTTCAAGTTATCCCATGTCGGACCAGGAGTTCTGAGTATGGCAAATGCTGGCCCTAATA 598
Query 651 CAAATGGAAGTCAGTTCTTTATCTGCACTATTAAG 685
||||||||||||||||||||||||||||| |||||
Sbjct 599 CAAATGGAAGTCAGTTCTTTATCTGCACTGTTAAG 633
Score = 425 bits (230), Expect = 3e-118
Identities = 334/377 (89%), Gaps = 35/377 (9%)
Strand=Plus/Plus
Query 686 ACGTCATGGTTGGACGGAAGACATGTGGTGTTCGGGCAAGTAATAGAAGGAATGGAAGTG 745
|||||||||||||||||||| ||||| | | | |||||||||||||||||||||
Sbjct 701 ACGTCATGGTTGGACGGAAGGCATGT-G-G-T-------GTAATAGAAGGAATGGAAGTG 750
Query 746 GTGAAGCTGATAGAGGAACAAGAGACAGACAGAGGAGACCGTCCCAGAAAGAAAGTGGTG 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 GTGAAGCTGATAGAGGAACAAGAGACAGACAGAGGAGACCGTCCCAGAAAGAAAGTGGTG 810
Query 806 ATAGCAGACTGTGGTCAACTTCCAATGTCTGAAGCTTAAAAGTAAGATCATTTAACCAAA 865
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 811 ATAGCAGACTGTGGTCAACTTCCAATGTCTGAAGCTTAAAAGCAAGATCATT-AACCAAA 869
Query 866 ATCTTGTAGACATGAGATGGAGCTTGTTTTTGCATTTTACAACCCTTTCTTTTGTGTAAT 925
| ||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||
Sbjct 870 ACCTTGTAGACATGAGATGGAGCCTGTGTTTGCACTTTACAACCCTTTCTTTTGTGTAAT 929
Query 926 GGATTTGTATCCCCTTCTTCC--A------AAAA-TTTAAGAAAGAAATAGTATTCCGCT 976
||||||||||||||||||||| | |||| ||||||||||||||||| || |
Sbjct 930 GGATTTGTATCCCCTTCTTCCTGACCTCCCAAAAATTTAAGAAAGAAATAGT-TT----T 984
Query 977 GCCGGGTGTTGAACTCATATTTCATTTCATTGGTTTGTTTCGAAATTAACCATTGTGTTA 1036
| |||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 985 G----------AACTCAGATTTCATTTCATTGGTTTGTTTCGAAATTAACCAATGTGTTA 1034
Query 1037 TAGCGGTTCAGTTGCAT 1053
|||||||||||||||||
Sbjct 1035 TAGCGGTTCAGTTGCAT 1051
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39266604510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5