BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13130.1
Length=2453
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488129 jgi|Araly1|488129|fgenesh2_kg.6__1263__AT5G13130.1 3446 0.0
> Ahg488129 jgi|Araly1|488129|fgenesh2_kg.6__1263__AT5G13130.1
Length=2439
Score = 3446 bits (1866), Expect = 0.0
Identities = 2280/2471 (92%), Gaps = 64/2471 (3%)
Strand=Plus/Plus
Query 11 CGTGTCTCACGtctctctctc-ctctctc-CC-ACTTCAAGCTGCTTCAAAACCCTAGAA 67
||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||
Sbjct 1 CGTGTCTCACGTCTCTCTCTCTCTCTCTCTCCAACTTCAAGCTGCTTCAAAACCCTAGAA 60
Query 68 GCTTCTACTGCAACCACGG-ATTCTTCTCAAATCAAGTC-CAATAAACCACTGTTAGTGA 125
|||||||||||| ||| || ||||||||||||||||| | ||| ||||| ||| || | |
Sbjct 61 GCTTCTACTGCAGCCAGGGCATTCTTCTCAAATCAAG-CTCAACAAACCGCTGCTA-TTA 118
Query 126 -TCGGAGACATGGCCGAATCTGGCAGTACTAACCCTAAATCCCCATCCGTTGTTCCCGAT 184
|||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 119 GTCGGAGGCATGGCCGAATCTGGCAGTACTAACCCTAAATCCCAATCCGTGGTTCCCGAT 178
Query 185 TCGACTCTCGGTGGACTGAAGAGAGATTTAAGAAACTATCACGACGGTGATGATTCTAAT 244
||| ||||||||||||| ||||||||||||||||||||| | |||||||||||| |||||
Sbjct 179 TCGGCTCTCGGTGGACTCAAGAGAGATTTAAGAAACTATGAGGACGGTGATGATACTAAT 238
Query 245 AACTTGTCTATCAAGAAATCGAAGACCACGAA-GATGGAGAATA--ACT----GTCG--- 294
||||| |||||||||||||||| ||| || || ||| ||||||| || || |
Sbjct 239 AACTTTTCTATCAAGAAATCGAGGACTAC-AACGATAGAGAATACCTCTCAGGGTTGTAA 297
Query 295 AGAAATCGTTCCTTTGGATGT-AACACCATTGTCGATCGTGCCACCGGACACTCCAAAGC 353
| ||||||| ||||||||||| || ||||||| |||| ||| |||||| ||||||||||
Sbjct 298 AAAAATCGTGCCTTTGGATGTGAA-ACCATTGGCGATTGTGGAACCGGAAACTCCAAAGC 356
Query 354 TCTCTAGACAGTTTTGGAAAGCTGGCGATGATGATGAAGCTGCGCCTGTACCTCTTTATT 413
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 357 TCTCTAGACAGTTTTGGAAAGCTGGTGACGACGATGAAGCTGCGCCTGTACCTCTTTATT 416
Query 414 GTAGCAATGATGCGGCGGTTAGGGTTCATCCTCAATTTCTTCATGCAAACGCCACAAGCC 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 417 GTAGCAATGATGCGGCGGTTAGGGTTCATCCTCAATTTCTTCATGCAAACGCCAAAAGCC 476
Query 474 ACAAATGGGCTCTTGGAGCTTTAGCTGAACTTCTAGACAATTCTCTTGACGAGGTAAGTA 533
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 477 ACAAATGGGCTCTTGGAGCTTTGGCTGAACTTCTAGACAATTCTCTTGACGAGGTAAGTA 536
Query 534 ATGGGGCTACATATGTTCATGTTGATTCGACAATAAATAAAAGAGACGGAAAAAGCAGCA 593
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 537 ATGGGGCTACATATGTTCATGTTGATTCGACAACCAATAAAAGAGACGGGAAAAGCAGCA 596
Query 594 TTCTTATAGTTGAAGACAATGGAGGTGGGATGAATCCGAGTACGTTTAGAGAGTGCCTTT 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 597 TTCTTATAGTTGAAGACAATGGAGGTGGGATGAATCCGAGTACGTTTAGAGAGTTCCTTT 656
Query 654 CTTTGGGGTATTCAAGGAAACGCAATATGGCTAATAGAGTTGGTCAATATGGGAATGGAT 713
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 657 CTTTGGGGTATTCAAGGAAACGCAATCTGGTTAATAGAGTTGGTCAATATGGGAATGGAT 716
Query 714 TCAAAACTAGTACAATGAGGCTTGGTGCTGATGCAATTGTCTTCTCACGTTCTCGAGGAA 773
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 717 TCAAAACTAGTACAATGAGGCTTGGTGCTGATGCAATTGTCTTCTCACGTTGTCGAGGAA 776
Query 774 TCAATGGAAATAATCCGACACAGAGCATTGGTATGCTATCATATACGTTTCTTTACGAGA 833
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TCAATGGAAACAATCCGACACAGAGCATTGGTATGCTATCATATACGTTTCTTTACGAGA 836
Query 834 CAAGAAAATGTGAAGCAATTGTCCCCACGG------TTGATTATGAGTTGGTAGATAACA 887
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 837 CAAGAAAATGTGAAGCAATTGTCCCCACGGTACAAATTGATTTTGAGTTGGTAGATAACA 896
Query 888 AATGGAAGGAGATAGTTTATAACTCCACAAATGAGTGGCTTGATAATTTAGAGACTATAT 947
||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||
Sbjct 897 AATGGAAGGAGATAGTTTATAACTCCACAGAGGAGTGGGTTGATAATTTAGAGACTATAG 956
Query 948 TGAGGTGGTCGCCTTATCTATCCCAACAAGATTTATTGGACCAGTTTAATCACCTAGAAG 1007
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TGAGGTGGTCGCCGTATCTATCCCAACAAGATTTATTGGACCAGTTTAATCACCTAGAAG 1016
Query 1008 AGCAAGGTACTCGGATCGTGATTTATAACTTATGGGAAGATGATGAAGGGAAGATGGAAC 1067
| |||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||
Sbjct 1017 AACAAGGTACTCGGATCGTGATTTATAATTTATGGGAGGATGATGAAGGGAAGCTGGAAC 1076
Query 1068 TTGATTTTGATACAGATCCTCATGATATTCAACTCAGAGGTGTGAACAGAGATGAGAAGA 1127
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1077 TTGATTTTGATACAGATCCTCATGATATTCAACTCAGAGGTGTAAACAGAGATGAAAAGA 1136
Query 1128 ACATCGATATGGCTAAAACTTATCCTAACTCAAGGCATTTCCTGACTTATCGACACTCGC 1187
||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1137 ACATCGAAATGGCGAAAACTTATCCTAACTCGAGGCATTTCCTGACTTATCGACACTCAC 1196
Query 1188 TACGTAGTTATGCATCAATTCTGTACCTCAAACGTCCGGATAATTTCAGAATCATTCTTC 1247
|||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1197 TACGTAGTTATGCATCGATTCTGTATCTCAAACATCCGGATAATTTCAGAATCATTCTTC 1256
Query 1248 GTGGCGAAGATGTCGAACATCACAGCGTCTTAGACGACATGATGAAGATTGAAGAGAAAA 1307
||||| ||||||||||| |||||||| |||||||||||||||||| || || |||||||
Sbjct 1257 GTGGCAAAGATGTCGAATATCACAGCATCTTAGACGACATGATGATGACCGATGAGAAAA 1316
Query 1308 CATACAAACCTATGCGTTCTCCAGAATGGCCAGATCAAGAAGAGATGGTTGCTTCTCTAA 1367
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1317 CATACAAACCTACGCGTTCTCCAGAATGGCCAGATCAAGACGAGATGGTTGCTTCTCTAA 1376
Query 1368 AGCTTGGCTTTGTGAAAGATGCTCATCATCACATCGACATACAAGGTTTCAATGTTTACC 1427
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1377 AGCTTGGCTTTGTGAAAGATGCTCATCATCACATCGACATACAAGGGTTCAATGTTTACC 1436
Query 1428 ATAAGAACCGGCTTATCAAGCCATTTTGGAGGGTTTGGAATGCTGCTGGAAGTGATGGAC 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 ATAAGAACCGGCTTATCAAGCCATTTTGGAGGGTTTGGAATGCTGCTGGAAGTGATGGAC 1496
Query 1488 GTGGCGTTATTGGAATATTGGAAGCTAATTTCATACAACCAGCTCATAATAAGCAAGGAT 1547
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1497 GTGGCGTTATTGGAATTTTGGAAGCTAATTTCATACAACCAGCTCATAATAAGCAAGGTT 1556
Query 1548 TTGAGCGAACCGTCGTTCTTGCTAAACTCGAAAGCCGATTGGTCACA-CACCAAAAGAAC 1606
|||||||||||||||||||| |||||||||||| ||||||| || || ||||||||||||
Sbjct 1557 TTGAGCGAACCGTCGTTCTTTCTAAACTCGAAAACCGATTGATC-CAACACCAAAAGAAC 1615
Query 1607 TATTGGTCTTCAAGGTGTCACGAAATTGGTTATGCTCCAAGAAGGAAACAAAAGAATTAT 1666
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1616 TATTGGTCTTCAAGGTGTCACGAGATTGGTTATGCTCCAAGAAGGAAACAAAAGAATTAT 1675
Query 1667 GAAAGTAGCGTTACAGAAACCCCTCGACCTTTCAACAACATAAACGTTGTTAAGGGATCT 1726
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||
Sbjct 1676 GAAAGTAGCGTTACAGAAACCACTCGACCTTTCAATAACATAAACGTTGTTAAGGCATCT 1735
Query 1727 TCTTCTAGTACTCCAGTACCAGTTCGAGTATTCAGGCCAAATGTTGAACCATCTGGAAGA 1786
||||||| |||||| ||| | || | | | |||| || ||||||||||||||||||||
Sbjct 1736 TCTTCTA---CTCCAGCACCGGCTCCA-T-T-CAGGACATATGTTGAACCATCTGGAAGA 1789
Query 1787 AACCAAATCCCTCAGGTTGAAACACGAGAAAGGAGTTTTGACATCAATCCTGAGATCGGG 1846
||||||| |||||||||||||||||||||||| |||| ||| || || ||| | ||||||
Sbjct 1790 AACCAAAGCCCTCAGGTTGAAACACGAGAAAGAAGTTATGATATAAAACCTCAAATCGGG 1849
Query 1847 GCTAAGAA-CAGAAGCTATTATGGGCTTGGGATAAGTAGTTTCAAAGAAACAGGCTCAGT 1905
||| || | ||| | || |||||||||| |||||||||||||||||||||||||||
Sbjct 1850 TCTAC-AATCGGAAACCAT---GGGCTTGGGACAAGTAGTTTCAAAGAAACAGGCTCAGT 1905
Query 1906 TAATCTAGAAGCAGAGTTGCAGAAGGTGAAACAGGAATCAGCCAAACTAGTCTCTGAGCT 1965
||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||| |
Sbjct 1906 TAATCTAGAAGCAGAGTTGCAGAGGGTGAAACAGGAATCAGCAAAACTGGTCTCTGAGTT 1965
Query 1966 GCAGAGACAAAAA-CAACTGCTTGAGTTGCAACTCCAGGAGTCAAAAGCTAAGATCCA-A 2023
||||| ||||| || || ||||||||||||||| ||||||| ||||||||||| | |
Sbjct 1966 AAAGAGAGAAAAAGCA-CTACTTGAGTTGCAACTCGAGGAGTCGAAAGCTAAGATT-AGA 2023
Query 2024 AACTTGGAAAAGGCGCAGAGGGAGAAAGAAGTGCTTGAGTTGCAACTTAAGGAGTCAAAA 2083
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2024 AACTTGGAAAAGGCGCAGAGGGAGAAAGAACTGCTTGAGTTGCAACTTAAGGAGTCAAAG 2083
Query 2084 GCTAGGATCCAAAACTTGGAAAATCGGCAGGAGGGAGTAAGTACTATCTTTCAACAAGAA 2143
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 2084 GCTAGGATCCAAAACTTGGAAAATCGGCAGGAGGGAGTGAGTACAATTTTTCAACAAGAA 2143
Query 2144 AGAGCCCGCAGAGATGTAACTGAGGATGGCTTAAGGAAAAAACTACGGGAAGCTTCTGAT 2203
||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||
Sbjct 2144 AGAGCCCGCAGAGATGTGACTGAGGATGGCTTAAGGAGGAAACTACGGGATGCTTCTGAT 2203
Query 2204 GTCATCGATGGGCTAAGGAAGCAAGTGGATACCTTCAAAGGAAAACGCATTTTGTAAACA 2263
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 2204 GTCATCGATGGGCTAAGGAAGCAAGTGGAGACCTTCAAAGGAAAACGCATGTTGTAA--- 2260
Query 2264 CAGTTTCAAGATCAGTACTCttttctagtttgttttttt----ggttttaagttttAAGG 2319
| || | ||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 2261 --G---CA----C-GTACTCTTTTCTAGTTTGTTTTTTTTTTTGGTTT-AAGTTTTAAGG 2309
Query 2320 GTTTGTACATAAACTTCTCTCCTTAAGCAGAATGTAATGTATATTAT-GTAGACTTAGGG 2378
||| |||||||||||||| | || ||||||||||||||||||| | ||||||||||||
Sbjct 2310 GTT-GTACATAAACTTCTAGCAATAGGCAGAATGTAATGTATATTTTAGTAGACTTAGGG 2368
Query 2379 ACTTTTGTGAAAGACCCCAACTCAAAATGTAAGCAGGCAGTGGTTTTTTGCTAATCAAGG 2438
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2369 ACTTTTGTGAAAGACCCCAACTCAAAATGTAAGCATGCAGTGGTTTTTTGCTAATCAAGG 2428
Query 2439 TCAAGCATGCA 2449
|||||||||||
Sbjct 2429 TCAAGCATGCA 2439
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92445024615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5