BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13140.1
Length=982
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488130 jgi|Araly1|488130|fgenesh2_kg.6__1264__AT5G13140.1 1334 0.0
> Ahg488130 jgi|Araly1|488130|fgenesh2_kg.6__1264__AT5G13140.1
Length=858
Score = 1334 bits (722), Expect = 0.0
Identities = 813/857 (95%), Gaps = 5/857 (1%)
Strand=Plus/Plus
Query 1 ACATTATCATCAAAAAGAACAATAGAGAGAGCGAGTGAGGATTAGCCACAATGTATCTTC 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1 ACATTATCATCAAAAAGAACAATAGAGAGAGCGAGTGA-GATTAGCCACAATGTATTTTC 59
Query 61 CTCTCCTCTATCTTCTGTTTCTGGCTTCTTGCTTGACACATCAAGCTTTAGGCCGTGGTC 120
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
Sbjct 60 CTCTCCTCTATCTTCTGCTTCTGTCTTCTTGCTTGACACATCAAGCTTTAGGCCGTGGGC 119
Query 121 GTGGCCGGCCATCACCGGAAGGAAGCTTGGATCCTTCTTCTCGCATCACCGTAGTCGGAG 180
|||||||| || ||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 120 GTGGCCGGTCACCACCGGAAGGAAGCTTGGACCCTTCTTCTCGCATCACTGTCGTCGGAG 179
Query 181 TTGTCTACTGTGACACGTGTTCTATCAACACTTTCTCAAGACAAAGCTATTTCTTACAAG 240
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 180 TTGTCTACTGTGACACGTGTTCTATCAACACTTTCTCAAGACAGAGCTATTTCTTAGAAG 239
Query 241 GTGTGGAAGTTCATGTGACATGTAGATTCAAAGCAAGTTCACCAAAAACAGCAGAGGAAG 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTGTGGAAGTTCATGTGACCTGTAGATTCAAAGCAAGTTCACCAAAAACAGCAGAGGAAG 299
Query 301 TGAACATATCAGTAAACAGAACAACAAACAGAAGTGGCGTGTACAAGCTCGAGATCCCTC 360
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 300 TGAACATATCAGTAAACAGAACAACAAACAGAAGCGGCATGTACAAGCTCGAGATCCCTC 359
Query 361 ACGTAGATGGCATCGATTGTGTCGACGGAATCGCTATATCATCACAATGCAGTGCCAAGA 420
|||| |||||||||||||| |||||||||||||||||| ||||||||||||| ||||||
Sbjct 360 ACGTGGATGGCATCGATTGCGTCGACGGAATCGCTATAGCATCACAATGCAGCGCCAAGC 419
Query 421 TACTCAAAACCTCCTCTGACGACAACGGAGGCTGCAGCATCCCTGTTTTCCAAACTGCAA 480
|||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 420 TACTCAAAACCTCCTCCGACGACAATGGAGGCTGCAGCATCCCCGTTTTCCAAACTGCAA 479
Query 481 CCAACGAAGTATCCATCAAATCAAAGCAAGATCGTGTCTGTATCTACAGCTTAAGCGCAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CCAACGAAGTATCCATCAAATCAAAGCAAGATCGTGTCTGTATCTACAGCTTAAGCGCAC 539
Query 541 TAAGCTATAAACC-TCCTCACAAAAACACATCATTGTGTGGAAACGGAGGGAAGAAACAT 599
| ||||| ||||| ||| ||||||||||||||||| ||||||||||| ||||||||| ||
Sbjct 540 TCAGCTACAAACCTTCC-CACAAAAACACATCATTATGTGGAAACGGCGGGAAGAAAAAT 598
Query 600 CACCGAAAGGACGAGAAGGTGGAGAAGAAGTTTAGAGATTCGAAATTCTTCTGGCCTTAT 659
||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 599 CACCGAAAGGAGGAGAAGGCGGAGAAGAAATTTAGAGATTCGAAATTCTTCTGGCCTTAT 658
Query 660 TTGGCACCGTATTGGTTCCCTTGGCCATATCCGGATCTACCTCCATTGCCAACTCTACCG 719
|||||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||||| |
Sbjct 659 TTGGCACCGTATTGGTTCTCTTGGCCGTATCCGGATTTACCTCCATTGCCGACTCTACAG 718
Query 720 CCTTTTCCGTCTTTCCCTTTCCCTTCTT-TACCTTTCGGAAACCCGAATCTGGCATTGCC 778
|| ||||||||| ||||||||||| || ||||||||||||||||||||| |||||||||
Sbjct 719 CCGCTTCCGTCTTCCCCTTTCCCTT-TTCTACCTTTCGGAAACCCGAATCCGGCATTGCC 777
Query 779 GGCTTTCGATTGGAAAAATCCGGTCACTTGGATACCTTATCTTCCACGTTTTCCTCCAGG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GGCTTTCGATTGGAAAAATCCGGTCACTTGGATACCTTATCTTCCACGTTTTCCTCCAGG 837
Query 839 AGATCATAATCCTTAGG 855
|||||||||||||||||
Sbjct 838 AGATCATAATCCTTAGG 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36483631569
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5