BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13150.1
Length=2102
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940780 jgi|Araly1|940780|scaffold_601324.1 2776 0.0
> Ahg940780 jgi|Araly1|940780|scaffold_601324.1
Length=1993
Score = 2776 bits (1503), Expect = 0.0
Identities = 1829/1979 (92%), Gaps = 52/1979 (3%)
Strand=Plus/Plus
Query 1 ATGGAGAAATCTGGAAATCACCATCACGCAAATGAATCATCGGAAAATCATGATCACAAA 60
||||||||| |||||||| ||||||||||||||||||||||||| ||||| |||||||
Sbjct 21 ATGGAGAAAGCTGGAAAT---CATCACGCAAATGAATCATCGGAAACTCATGTTCACAAA 77
Query 61 TCTGAAGATCACGAGAATAAACAACATTCC---G-AT--G------AACTGCATTCATCG 108
||||| ||||| |||||||||||||||||| | || | ||||||||||||||
Sbjct 78 TCTGACGATCATGAGAATAAACAACATTCCGATGAATCGGAACAAAAACTGCATTCATCG 137
Query 109 ACGCCGGAATCACAATCGGAATCCTCCGAACATAGCCTCG-TCGAGGTGATGGAAGCCGT 167
||||||| ||||||||||||| ||||| ||||| | || |||||||||| |||||
Sbjct 138 ACGCCGG------AATCGGAATCCTCGGAACAGAGCCTTGTTC-AGGTGATGGAGGCCGT 190
Query 168 CGTCGATTTCATTCAAA-CACTTTCTTCCGAGAAAGATCCGTTA-GGAGAGA-TCTCACC 224
| |||||||| ||||| ||||||| ||||||| |||||| | || |||| || | ||
Sbjct 191 GGACGATTTCA-TCAAAGCACTTTCAGCCGAGAAGGATCCGCCACGG-GAGATTC-CTCC 247
Query 225 AGCGGTGGAGTCATTCCCGGAG-GCGGTGGATTCATTGGTGTCAAAAATGGAATCTTCCG 283
||||||||| ||||||| ||| | ||||||||||||||||||||||||||||||||| |
Sbjct 248 GGCGGTGGAGCCATTCCCTGAGAG-GGTGGATTCATTGGTGTCAAAAATGGAATCTTCTG 306
Query 284 GGCTTGGGCGGGACGAAACAGAGGACTCTGTATTCATCGACGCCGTTAACCGGATTTCGA 343
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 GGCTTGGGAGGGACGAAACAGAGGACTCTGTATTCATCGACGCCGTTAACCGGATTTCGA 366
Query 344 AATCGGTTATGAGATTGAGAGAGCTTAAATTAGATTCAACACCGGTTTCTTCTTGGTTAA 403
||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 367 AATCGGTTATGAGATTGAGGGAGCTTAAATTAGATTCAACTCCGGTCTCTTCTTGGTTAA 426
Query 404 ACCGGGCGAGTTCGGTTCAACACCGTGCTGTTTCTCTTCTCGACGAAGAGTTTCGTCATC 463
||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 427 ACCGGGCGAGTTCGGTTCAGCATCGTGCTGTATCTCTTCTCGACGAAGAGTTTCGTCATC 486
Query 464 TTCTAGATCGTTCCAGAGAGGAGGAGAAGAAGaacaacaacaacaacaacCACCACGACG 523
|||||||||||||| ||| |||||||||||| || ||| | || ||||||
Sbjct 487 TTCTAGATCGTTCC--AGA-GAGGAGAAGAAG---------AAGAAC-ATCA--ACGACG 531
Query 524 GGAGCAATTCCGATCACAACAATTCTTCAACAAATGATTCAGATCGATGCGTTTTACAAG 583
||| ||||||||||||||||||||||||||| || || || |||||||||||||||||||
Sbjct 532 GGAACAATTCCGATCACAACAATTCTTCAACTAACGAATCGGATCGATGCGTTTTACAAG 591
Query 584 ACCATGAGGAGGCA-GAGGAAGAAAGTTTCCATGATTTTTCACCGGAATCGATCTCGACG 642
|||| || |||| | |||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 592 ACCAGGAAGAGG-AGGAGGAAGAAAGTTTCCCGGATTTTCCACCGGAATCGATCTCGACG 650
Query 643 TTGAAAAAGATCGCCGGAGCGATGATCTCCGCCGGTTACGAAGCAGAGTGTTGTATGTCA 702
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TTGAAGAAGATCGCCGGAGCGATGATCTCCGCCGGTTACGAAGCAGAGTGTTGTATGTCA 710
Query 703 TACGAAATGTCGAGACGGCACGCGTTCAAGGAAGAGCTAAC-CGAGGTTGGATTCGAAGG 761
|||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||
Sbjct 711 TACGAAATGTCGAGACGGCACGCGTTCAAGGAGGAGCTA-CGCGAGGTTGGATTCGAAGG 769
Query 762 GATCAACGTTGAAGACGTGCAGAGAATAGGTTGGGAATCTCTCGAAGGTGAAATCGCTTC 821
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 770 GATCAACGTTGAAGACGTGCAGAGAATAAGTTGGGAATCTCTCGAAGGTGAAATCGCTTC 829
Query 822 GTGGATCTCAATCGTTCGCCGTTGCTCCACCGTGCTTTTCCCCGGCGAGCTTTCTCTCTG 881
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 830 TTGGATCTCAATCGTTCGCCGTTGCTCCACCGTGCTTTTCCCCGGCGAGCTTTCTTTATG 889
Query 882 TAACGCCGTCTTTCCGGATCAAGATCATTCCTCTGTCCGTAAACGTCTTTTCACCGGTTT 941
|| || ||||||||||||||||||||| ||||| | |||||||| || |||||||||||
Sbjct 890 CAATGCGGTCTTTCCGGATCAAGATCATGCCTCTATTCGTAAACGCCTATTCACCGGTTT 949
Query 942 GGTCTCCGCTGTTACAATCCGGTTTCTTGATTTCTCCGGTGCGGTGGTGCTGACGAAACG 1001
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 950 GGTCTCTGCTGTTACAATCCGGTTTCTTGATTTCTCTGGTGCGGTGGTGCTGACAAAACG 1009
Query 1002 GTCGTCGGAGAAGCTTTTCAAGTTCTTAGACATGTACGAGACGCTTCGTGATTTGATTCC 1061
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 GTCGTCGGAGAAGCTCTTCAAGTTCTTAGACATGTACGAGACGCTTCGTGATTTGATTCC 1069
Query 1062 TGCGGTGGAACAATCTGATTCAGATTTGATCCAGGAGATTAAACTGGCTCAGACGCGGCT 1121
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1070 AGCGGTGGAACAATCTGATTCAGATTTGATCCAGGAGATTAAATTGGCTCAGACGAGGCT 1129
Query 1122 AGGAGAAGCAGCAGTGACGATATTCGGAGAGCTAGAGAAGTCGATAAAGAGCGATAATGG 1181
||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1130 AGGTGAAGCAGCAGTGACTATATTCGGAGAGCTTGAGAAGTCGATCAAGAGCGATAATGG 1189
Query 1182 ACGAACTCCGGTACCGAGCGGCGCAGTTCATCCATTAACACGTTACACCATGAACTACCT 1241
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1190 AAGAACTCCGGTACCGAGCGGCGCGGTTCATCCATTAACACGTTACACCATGAACTACCT 1249
Query 1242 CAAATACGCTTGTGAGTATAAAGAAACATTAGACCAAGTGTTCCAACACTATGAAGCGAA 1301
||| |||||||||||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct 1250 CAAGTACGCTTGTGAGTACAAAGAAACATTAGACCAAGTGTTCCAACACTATGAATCTAA 1309
Query 1302 TCAAACAGATAACAAACCTGAACCAGAGACCAAACCTAGGCAGCAGCAACGAGAAGACGA 1361
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1310 TCAAACAGATAACAAACCTGAACCAGAGACCAAACCAAAGCAGCAGCAACGAGAAGACGA 1369
Query 1362 TGAAGAGTACAAAGTTTCAGCTTTCGCTAGACAAATGATAAGGGTGATGGAATTGCTTGA 1421
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1370 TGAAGAGTACAAAGTGTCAGCTTTTGCTAGACAAATGATAAGGGTGATGGAATTGCTTGA 1429
Query 1422 CGCAAATCTTGAGATCAAATCGAGACTGTACAGAGACCCATCACTGAGATTTATATTCTT 1481
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1430 CGCAAATCTTGAGATCAAATCGAAACTGTACAGAGACCCATCACTGAGATACATATTCTT 1489
Query 1482 GATGAATAATGGAAGATACATT-TTGCAGAAGATTAAAGGGTCTATCGAGATAAGGGATT 1540
|||||||||||||||||||||| || ||||||||||||||||| || ||||||||||| |
Sbjct 1490 GATGAATAATGGAAGATACATTCTT-CAGAAGATTAAAGGGTCGATAGAGATAAGGGACT 1548
Query 1541 TGATGGGACAGTCATGGACGAGGAAGAGATCTACGGAGCTGAGACAGTATCATAAGAGTT 1600
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1549 TGATGGGACAGTCATGGACAAGGAAAAGATCGACGGAGCTGAGACAGTATCATAAGAGTT 1608
Query 1601 ACCAGAGAGAGACTTGGGGGAAAGTGTTACAGTGTATGAATCAAGAAGGGTTACAGGTGA 1660
|||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 1609 ACCAGAGAGAGACTTGGGGGAAAGTGTTGCAATGTATGAATCAAGAAGGGTTACAAGTGA 1668
Query 1661 ACGGGAAGGTGTCGAAGCCGGTTTTGAAGGAGAGGTTTAAGATTTTCAATGCTATGTTCG 1720
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1669 ACGGGAAGGTGTCGAAGCCGGTTTTGAAGGAGAGGTTCAAGATTTTCAATACTATGTTCG 1728
Query 1721 ATGAGATTCACAAGACGCAGAGCACTTGGATTGTGAGTGATGAGCAGATGCAATCGGAGC 1780
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1729 ATGAGATTCACAAGACGCAGAGCACCTGGATTGTGAGTGATGAGCAGATGCAATCGGAGC 1788
Query 1781 TAAGGGTGTCGATTTCGTCGTTGGTGATTCCGGCTTATCGGTCTTTCTTTGGGAGGTATA 1840
||||||||||||| ||| ||||||||||||| || |||||||||||||||||||||||||
Sbjct 1789 TAAGGGTGTCGATCTCGGCGTTGGTGATTCCAGCATATCGGTCTTTCTTTGGGAGGTATA 1848
Query 1841 AGCAACATCTTGATTCAGGGAAACAGACGGATAAGTATGTTAAGTATCAGCCTGAGGATA 1900
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1849 AGCAACATCTTGATTCAGGGAAGCAGACGGATAAGTATGTCAAGTATCAGCCTGAGGATA 1908
Query 1901 TTGAATCTTTCATTGATGACTTGTTTGATGGCAACCCAACTTCTATGGCACGCAAGAGA 1959
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1909 TTGAGTCTTTCATTGATGACTTGTTTGATGGCAACCCTACTTCTATGGCACGCAAGAGA 1967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79075348620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5