BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13170.1
Length=1303
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488133 jgi|Araly1|488133|fgenesh2_kg.6__1267__AT5G13170.1 1803 0.0
> Ahg488133 jgi|Araly1|488133|fgenesh2_kg.6__1267__AT5G13170.1
Length=1235
Score = 1803 bits (976), Expect = 0.0
Identities = 1142/1216 (94%), Gaps = 35/1216 (3%)
Strand=Plus/Plus
Query 48 gagagaAAGCTTTAGGGTTTCaaaaaaaaaaaaaaa--GAGACCCTTTAGAAATCTCCTA 105
||||| ||||||||||||| ||||||||||||||| |||||||| |||||||| || |
Sbjct 28 GAGAG-AAGCTTTAGGGTTAAAAAAAAAAAAAAAAACTGAGACCCTATAGAAATC-CCCA 85
Query 106 A-C-AGGAAAGTTTTCTCAATTGCTATAGAAAATGGGAGTCATGATCAATCACCATTTCC 163
| | || |||| |||||||| |||| ||||||||||||||||||||||||||||||| |
Sbjct 86 AGCGAGAAAAG-CTTCTCAATCGCTAGAGAAAATGGGAGTCATGATCAATCACCATTTGC 144
Query 164 TCGCTTTTATCTTCGGCATCTTAGGAAACGTGATATCCTTCCTTGTATTCCTCGCTCCAG 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 TCGCTTTTATCTTCGGCATCTTAGGAAACGTGATATCCTTCCTTGTATTCCTCGCTCCAG 204
Query 224 TGCCAACTTTTTATAGAATATACAAGAGAAAATCGACGGAAAGTTTCCAGTCGCTACCGT 283
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 205 TGCCAACTTTTTATAGAATATACAAGAAAAAATCGACGGAAAGTTTCCAGTCGCTACCGT 264
Query 284 ACCAAGTGTCGCTATTTAGCTGCATGCTATGGCTCTACTACGCATTGATTAAGAAAGACG 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 ACCAAGTGTCGCTATTTAGCTGCATGCTATGGCTCTACTACGCATTGATTAAGAAAGACG 324
Query 344 CTTTTCTCCTAATTACCATCAACTCCTTTGGCTGCGTCGTGGAGACTCTCTACATAGCCA 403
||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 325 CTTTTCTCCTAATTACCATAAACTCCTTCGGCTGCGTCGTGGAGACTCTCTACATCGCCA 384
Query 404 TGTTCTTCGCTTACGCCACCAGGGAGAAAAGGATATCGGCTATGAAGTTGTTCATAGCAA 463
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
Sbjct 385 TGTTCTTCGCTTACGCCACCAAGGACAAAAGGATATCGGCTATGAAGTTGTTCATAGCGA 444
Query 464 TGAACGTTGCCTTCTTCTCGTTGATTCTAATGGTAACACATTTCGTGGTTAAAACTCCTC 523
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct 445 TGAACGTTGCCTTCTTCTCGTTGATTCTAATGGTTACACATTTCGTGGTTGAAACTCC-C 503
Query 524 -CCCTCCAAGTCTCTGTACTCGGCTGGATTTGTGTTGCCATTTCTGTTTCTGTTTTCGCT 582
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 504 ACCCTCCAAGTCTCTGTCCTCGGCTGGATTTGCGTTGCCATTTCTGTTTCTGTTTTCGCT 563
Query 583 GCCCCTCTAATGATCGTGGCTCGTGTGATAAAGACAAAGAGTGTGGAGTACATGCCCTTC 642
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 564 GCCCCTCTAATGATCGTGGCTCGTGTGATAAAGACAAAGAGTGTGGAGTTCATGCCCTTC 623
Query 643 ACGCTTTCTTTCTTCCTCACTATAAGCGCCGTTATGTGGTTCGCTTATGGTTTATTCCTC 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 ACGCTTTCTTTCTTCCTCACTATAAGCGCCGTTATGTGGTTCGCTTATGGTTTATTCCTC 683
Query 703 AATGACATATGCATAGCGATTCCAAACGTGGTGGGATTCGTACTAGGGCTGTTGCAAATG 762
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 AACGACATATGCATAGCGATTCCAAACGTGGTGGGATTCGTACTAGGGCTGTTGCAAATG 743
Query 763 GTTTTGTACTTG-GTTTACAGGAACTCAAATGAGAAACCAGAGA---A---GA---TTAA 812
||||| ||| | ||||| ||||||||||||||||||||||||| | || ||||
Sbjct 744 GTTTTATACG-GAGTTTATAGGAACTCAAATGAGAAACCAGAGATGGAAAAGAAGATTAA 802
Query 813 TTCGTCAGAACAACAACTTAAGAGTATTGTCGTGATGAGTCCGTTAGGTGTGTCGGAAGT 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 TTCGTCAGAACAACAACTTAAGAGTATTGTCGTGATGAGTCCGTTAGGTGTGTCGGAAGT 862
Query 873 GCACCCAGTTGTGACGGAATCGGTGGACCCACTCTCTGAAGCCGTTCATCATGAGGATCT 932
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 863 GCACCCAGTTGTGACGGAATCGGTGGACCCACTCTCTGACGCCGTTCATCATGAGGATCT 922
Query 933 GTCCAAAGTTACTAAAGTGGAGGAGCCGTCAATTGAAAACGGCAAGTGCTACGTGGAGGC 992
|||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||| |
Sbjct 923 GTCCAAAGCTACTAAAGTGGAGGAGCCGTCAATTGAAAACGGCAAATGCCACGTGGAGAC 982
Query 993 TACTCGTCCTGAAACCGTTTGAAGTGTCAATAT--GTGAAGCTCAAA-ATATTGctctct 1049
||||||| ||||||| ||||||||||||||| | ||||||| ||| ||||| ||||||
Sbjct 983 TACTCGTTCTGAAACTGTTTGAAGTGTCAATCTACGTGAAGCA-AAATATATTTCTCTCT 1041
Query 1050 ctctctct-ctctttcactctctttctctcGGCTCGTCAGGGCCGGCCAAAGGAAGAAAT 1108
|||| | | |||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1042 CTCTTT-TGCTCTTTTGCTCTCTTTCTCTCGGCTCGTC-GGGCCGGCCAAAGGAAGAAAT 1099
Query 1109 T-----GTATTATCGGCGGGGTGGTTTGTTAAATTTCCATTTTTGTTTCGTATCTTATTG 1163
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 TAAATTGTATTATCGGCGGGGTGGTTTGTTAAATTTCCATTTTTGTTTCGTATCTTATTG 1159
Query 1164 ATGATGTACTACT--T-GCATAAAGTTTTGTGTTTATTTGAATATATTATCTTTGTGTAA 1220
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 ATGATGTACTACTACTTGCATAAAGTTTTGTGTTTATTTGAATATATTATCTTTGTGTAA 1219
Query 1221 GTTGTAACTAGTGCTC 1236
||||||||| ||||||
Sbjct 1220 GTTGTAACTGGTGCTC 1235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48721087926
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5