BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G13170.1 Length=1303 Score E Sequences producing significant alignments: (Bits) Value Ahg488133 jgi|Araly1|488133|fgenesh2_kg.6__1267__AT5G13170.1 1803 0.0 > Ahg488133 jgi|Araly1|488133|fgenesh2_kg.6__1267__AT5G13170.1 Length=1235 Score = 1803 bits (976), Expect = 0.0 Identities = 1142/1216 (94%), Gaps = 35/1216 (3%) Strand=Plus/Plus Query 48 gagagaAAGCTTTAGGGTTTCaaaaaaaaaaaaaaa--GAGACCCTTTAGAAATCTCCTA 105 ||||| ||||||||||||| ||||||||||||||| |||||||| |||||||| || | Sbjct 28 GAGAG-AAGCTTTAGGGTTAAAAAAAAAAAAAAAAACTGAGACCCTATAGAAATC-CCCA 85 Query 106 A-C-AGGAAAGTTTTCTCAATTGCTATAGAAAATGGGAGTCATGATCAATCACCATTTCC 163 | | || |||| |||||||| |||| ||||||||||||||||||||||||||||||| | Sbjct 86 AGCGAGAAAAG-CTTCTCAATCGCTAGAGAAAATGGGAGTCATGATCAATCACCATTTGC 144 Query 164 TCGCTTTTATCTTCGGCATCTTAGGAAACGTGATATCCTTCCTTGTATTCCTCGCTCCAG 223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 145 TCGCTTTTATCTTCGGCATCTTAGGAAACGTGATATCCTTCCTTGTATTCCTCGCTCCAG 204 Query 224 TGCCAACTTTTTATAGAATATACAAGAGAAAATCGACGGAAAGTTTCCAGTCGCTACCGT 283 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 205 TGCCAACTTTTTATAGAATATACAAGAAAAAATCGACGGAAAGTTTCCAGTCGCTACCGT 264 Query 284 ACCAAGTGTCGCTATTTAGCTGCATGCTATGGCTCTACTACGCATTGATTAAGAAAGACG 343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 265 ACCAAGTGTCGCTATTTAGCTGCATGCTATGGCTCTACTACGCATTGATTAAGAAAGACG 324 Query 344 CTTTTCTCCTAATTACCATCAACTCCTTTGGCTGCGTCGTGGAGACTCTCTACATAGCCA 403 ||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct 325 CTTTTCTCCTAATTACCATAAACTCCTTCGGCTGCGTCGTGGAGACTCTCTACATCGCCA 384 Query 404 TGTTCTTCGCTTACGCCACCAGGGAGAAAAGGATATCGGCTATGAAGTTGTTCATAGCAA 463 ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| | Sbjct 385 TGTTCTTCGCTTACGCCACCAAGGACAAAAGGATATCGGCTATGAAGTTGTTCATAGCGA 444 Query 464 TGAACGTTGCCTTCTTCTCGTTGATTCTAATGGTAACACATTTCGTGGTTAAAACTCCTC 523 |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| | Sbjct 445 TGAACGTTGCCTTCTTCTCGTTGATTCTAATGGTTACACATTTCGTGGTTGAAACTCC-C 503 Query 524 -CCCTCCAAGTCTCTGTACTCGGCTGGATTTGTGTTGCCATTTCTGTTTCTGTTTTCGCT 582 |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 504 ACCCTCCAAGTCTCTGTCCTCGGCTGGATTTGCGTTGCCATTTCTGTTTCTGTTTTCGCT 563 Query 583 GCCCCTCTAATGATCGTGGCTCGTGTGATAAAGACAAAGAGTGTGGAGTACATGCCCTTC 642 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 564 GCCCCTCTAATGATCGTGGCTCGTGTGATAAAGACAAAGAGTGTGGAGTTCATGCCCTTC 623 Query 643 ACGCTTTCTTTCTTCCTCACTATAAGCGCCGTTATGTGGTTCGCTTATGGTTTATTCCTC 702 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 624 ACGCTTTCTTTCTTCCTCACTATAAGCGCCGTTATGTGGTTCGCTTATGGTTTATTCCTC 683 Query 703 AATGACATATGCATAGCGATTCCAAACGTGGTGGGATTCGTACTAGGGCTGTTGCAAATG 762 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 684 AACGACATATGCATAGCGATTCCAAACGTGGTGGGATTCGTACTAGGGCTGTTGCAAATG 743 Query 763 GTTTTGTACTTG-GTTTACAGGAACTCAAATGAGAAACCAGAGA---A---GA---TTAA 812 ||||| ||| | ||||| ||||||||||||||||||||||||| | || |||| Sbjct 744 GTTTTATACG-GAGTTTATAGGAACTCAAATGAGAAACCAGAGATGGAAAAGAAGATTAA 802 Query 813 TTCGTCAGAACAACAACTTAAGAGTATTGTCGTGATGAGTCCGTTAGGTGTGTCGGAAGT 872 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 803 TTCGTCAGAACAACAACTTAAGAGTATTGTCGTGATGAGTCCGTTAGGTGTGTCGGAAGT 862 Query 873 GCACCCAGTTGTGACGGAATCGGTGGACCCACTCTCTGAAGCCGTTCATCATGAGGATCT 932 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 863 GCACCCAGTTGTGACGGAATCGGTGGACCCACTCTCTGACGCCGTTCATCATGAGGATCT 922 Query 933 GTCCAAAGTTACTAAAGTGGAGGAGCCGTCAATTGAAAACGGCAAGTGCTACGTGGAGGC 992 |||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||| | Sbjct 923 GTCCAAAGCTACTAAAGTGGAGGAGCCGTCAATTGAAAACGGCAAATGCCACGTGGAGAC 982 Query 993 TACTCGTCCTGAAACCGTTTGAAGTGTCAATAT--GTGAAGCTCAAA-ATATTGctctct 1049 ||||||| ||||||| ||||||||||||||| | ||||||| ||| ||||| |||||| Sbjct 983 TACTCGTTCTGAAACTGTTTGAAGTGTCAATCTACGTGAAGCA-AAATATATTTCTCTCT 1041 Query 1050 ctctctct-ctctttcactctctttctctcGGCTCGTCAGGGCCGGCCAAAGGAAGAAAT 1108 |||| | | |||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1042 CTCTTT-TGCTCTTTTGCTCTCTTTCTCTCGGCTCGTC-GGGCCGGCCAAAGGAAGAAAT 1099 Query 1109 T-----GTATTATCGGCGGGGTGGTTTGTTAAATTTCCATTTTTGTTTCGTATCTTATTG 1163 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1100 TAAATTGTATTATCGGCGGGGTGGTTTGTTAAATTTCCATTTTTGTTTCGTATCTTATTG 1159 Query 1164 ATGATGTACTACT--T-GCATAAAGTTTTGTGTTTATTTGAATATATTATCTTTGTGTAA 1220 ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1160 ATGATGTACTACTACTTGCATAAAGTTTTGTGTTTATTTGAATATATTATCTTTGTGTAA 1219 Query 1221 GTTGTAACTAGTGCTC 1236 ||||||||| |||||| Sbjct 1220 GTTGTAACTGGTGCTC 1235 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48721087926 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5