BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13180.1
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940784 jgi|Araly1|940784|scaffold_601328.1 1356 0.0
> Ahg940784 jgi|Araly1|940784|scaffold_601328.1
Length=812
Score = 1356 bits (734), Expect = 0.0
Identities = 789/815 (97%), Gaps = 5/815 (1%)
Strand=Plus/Plus
Query 48 tctctct-c-tttGTTTGGAACCACCATGGATAATGTCAAACTTGTTAAGAATGGTGTTT 105
||||||| | ||||||||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 1 TCTCTCTCCTTTTGTTTGG-A--ACCATGGATAATGTTAAACTTGTTAAGAATGGTGTTT 57
Query 106 TGAGATTGCCACCTGGATTCAGATTCCATCCTACTGATGAAGAACTTGTGGTTCAATACC 165
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 58 TGAGATTGCCACCTGGATTCAGATTTCATCCTACTGATGAAGAACTTGTTGTTCAATACC 117
Query 166 TTAAGAGGAAAGTTTGTTCTTCTCCTTTGCCAGCTTCAATCATCCCTGAGTTTGATGTTT 225
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TTAAGAGGAAAGTCTGTTCTTCTCCTTTGCCAGCTTCAATCATCCCTGAGTTTGATGTTT 177
Query 226 GCAGAGCTGATCCTTGGGATTTACCTGGCAATTTGGAGAAAGAGAGGTACTTCTTTAGCA 285
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 178 GCAGAGCTGATCCTTGGGATTTACCTGGCAATTTGGAGAAGGAGAGGTACTTCTTTAGCA 237
Query 286 CAAGGGAAGCTAAATACCCAAATGGGAACCGGTCTAACCGGGCAACTGGGTCTGGTTATT 345
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CAAGGGAAGCTAAGTACCCAAATGGGAACCGGTCTAACCGGGCAACTGGGTCTGGTTATT 297
Query 346 GGAAAGCTACCGGTATTGATAAACGGGTTGTGACCTCTAGAGGAAATCAAATCGTTGGTT 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GGAAAGCTACCGGTATTGATAAACGGGTTGTGACCTCTAGAGGAAATCAAATCGTTGGTT 357
Query 406 TGAAGAAAACTCTTGTCTTCTACAAAGGCAAACCACCTCATGGCTCAAGAACCGATTGGA 465
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 358 TGAAGAAAACTCTTGTCTTCTACAAGGGCAAACCACCTCATGGCTCAAGAACCGATTGGA 417
Query 466 TCATGCACGAATATCGCCTCTCTTCTTCTCCTCCGAGTTCTATGGGTCCCACTCAGAACT 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCATGCACGAATATCGCCTCTCTTCTTCTCCTCCGAGTTCTATGGGTCCCACTCAGAACT 477
Query 526 GGGTACTCTGTCGTATCTTCTTGAAGAAAAGAGCCGGTAACAAGAACGACGACGACGACG 585
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 478 GGGTTCTCTGTCGTATCTTCTTGAAGAAAAGAGCCGGAAACAAGAACGACGACGACGACG 537
Query 586 GAGATAGCCGTAATCTTAGACATAATAATAATAACAATTCGAGTGACCAAATTGAGATAA 645
|||||||||| ||||||||||||| ||||||||| |||||||||||||||||||| ||||
Sbjct 538 GAGATAGCCGGAATCTTAGACATATTAATAATAATAATTCGAGTGACCAAATTGATATAA 597
Query 646 TTACAACAGACCAAACAGATGATAAAACAAAACCAATCTTCTTTGATTTCATGAGAAAAG 705
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 598 TTACAACAAACCAAACAGATGATAAAACAAAACCAATCTTCTTCGATTTCATGAGAAAAG 657
Query 706 AAAGAACAACAGATTTGAACCTTTTGCCGAGCTCTCCTTCTTCCGATCATGCTTCAAGTG 765
|||| || |||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 658 AAAGGACTACAGATTTGAACCTTTTGCCTAGCTCCCCTTCTTCCGATCATGCTTCAAGTG 717
Query 766 GAGTCACGACGGAGATCTTCTCTTCTTCCGATGAAGAGACCAGTAGTTGCAATAGTTTCA 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GAGTCACGACGGAGATCTTCTCTTCTTCCGATGAAGAGACCAGTAGTTGCAATAGTTTCA 777
Query 826 GATGAAATCTTTAATTTAATTTTAATGTTGACTAT 860
|| |||||||||||||||||||| |||||||||||
Sbjct 778 GAAGAAATCTTTAATTTAATTTTCATGTTGACTAT 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41020258692
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5