BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G13190.1

Length=775
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488134 jgi|Araly1|488134|fgenesh2_kg.6__1268__AT5G13190.1         989    0.0  


> Ahg488134 jgi|Araly1|488134|fgenesh2_kg.6__1268__AT5G13190.1
Length=700

 Score =  989 bits (535),  Expect = 0.0
 Identities = 570/587 (97%), Gaps = 2/587 (0%)
 Strand=Plus/Plus

Query  190  AAACAAAGGAGATGGCGAAAGAGGGAACAACGGTGATCGGAGTTCCATATTACGCGGGGC  249
            ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  115  AAATAAAGGAGATGGCGAAAGAGGGAACAACGGTGATCGGAGTTCCGTATTACGCGGGGC  174

Query  250  AGAATCCGTATCAGGCCGGAATTGTGCCGCCGAATGCTATCTATGGTGATCCGTTGGGTG  309
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  175  AGAATCCGTATCAGGCCGGAATCGTGCCGCCGAATGCTATCTATGGTGATCCGTTGGGTG  234

Query  310  CTCCGATTCAGCAAACGATTTATCGAGACACTCCTGCTCCTTTCAATTGCCTTTATTGCG  369
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct  235  CTCCGATTCAGCAAACGATTTATCGAGACACACCTGCTCCTTTCAATTGCCTTTATTGTG  294

Query  370  GCAACACTGGTCTCACCAATCTCAGATCGAAACCTGGTGTAGCTGCTGTTGTTGCTTGCA  429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  295  GCAACACTGGTCTCACCAATCTCAGATCGAAACCTGGTGTAGCTGCTGTTGTTGCTTGCA  354

Query  430  TGATGCCGTTTATGCTTGGTTTCTGCTTTCTCTGCCCTTCAATGGATTGCCTCTGGAACA  489
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  355  TGATGCCGTTTATGCTTGGATTCTGCTTTCTCTGCCCTTCAATGGATTGCCTCTGGAACA  414

Query  490  AACAGCACCATTGCCCTCAGTGTGGGAACAAGGTTGCTGACTTTGAGAAATCAGATCCCT  549
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  415  AACAGCACCATTGTCCTCAGTGTGGGAACAAGGTTGCTGACTTTGAGAAATCAGATCCCT  474

Query  550  GCCTGGTGATGGATCCGCCACAGTGGAAGCAACCTAGTTTCGCACTCCCAGCATGATAAG  609
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct  475  GCCTGGTGATGGATCCGCCACAGTGGGAGCAACCTAGTTTCGCACTCCCAGCATGATACG  534

Query  610  ATG-CATTCTTTTCTCTTGTGATTAATATTGCTTGTGAAGTTGAGTCGTTCTGTTGCATG  668
            ||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  535  ATGTC-TTCTTTTTTCTTGTGATTAATATTGCTTGTGAAGTTGAGTCGTTCTGTTGCATG  593

Query  669  TACTGGaaaaaaaCTAAGATCCAGAATAACCCTATAGAATGTGTGAGAAATGAAATATTT  728
            ||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct  594  TACTGGAAACAATCTAAGATCCAGAATAACCCTATAGAATGTGTGAGAAATGGAATATAT  653

Query  729  ATTCTTCTGTATCGTTTCACTGATTCATGAATGAACCGTCTATTGTC  775
            ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  654  ATTCTTCTGTATCGTTTCACTGATTCATGAATGAACCCTCTATTGTC  700



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28592187750


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5