BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13200.1
Length=1106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940786 jgi|Araly1|940786|scaffold_601330.1 1138 0.0
> Ahg940786 jgi|Araly1|940786|scaffold_601330.1
Length=904
Score = 1138 bits (616), Expect = 0.0
Identities = 776/848 (92%), Gaps = 31/848 (4%)
Strand=Plus/Plus
Query 59 AATTCAGAAAATTTCAGCCATGACAGGATCAC-A--AG-A-AG----ACCAACCTAAGAT 109
||||||||||||||||| |||||||||||| | | || | || |||||||||||
Sbjct 2 AATTCAGAAAATTTCAGACATGACAGGATCGCAAGGAGAAGAGACTCACCAACCTAAG-- 59
Query 110 CATCATTGATCAAGAGCAACCCAAAACTCTAGAAACAGAG---------CA--C-CAACC 157
||| |||||||||| ||||| |||||| ||||||||||| || | |||||
Sbjct 60 -ATCGTTGATCAAGAACAACCTAAAACTGTAGAAACAGAGCACCAACCACAGCCACAACC 118
Query 158 AGAACCTTCTTCATCGTCTCCGGATCAGAAGAAATGGGGTACTCACGTGATGGGAGCTCC 217
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 119 AGAACCTTCTTCATCGTCTCCGGATCAGAAGAAATGGGGGACTCACGTGATGGGAGCTCC 178
Query 218 GGCAGCTCCAGTTGCTCATCCCGATAACCAACAGGCGGCGGCGTGGGTCGCTGGAGATAA 277
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 179 GGCAGCTCCCGTGGCTCATCCCGATAACCAACAGGCGGCGGCGTGGGTCGCCGGAGATAA 238
Query 278 CCAGCAGACGCAGTACCAACCGTACGTCATCTACTCTCCTGTCGAACATCCAACAACTAA 337
||||||||||||||| ||||||||||||||||||||||||||||||||| | | |||||
Sbjct 239 CCAGCAGACGCAGTATCAACCGTACGTCATCTACTCTCCTGTCGAACAT-C-A-TACTAA 295
Query 338 CAACCCTCTCGAGCCAGTCATCGGAATGTTCCATACCTGGAGTCGCAAGGCAGAAACCGT 397
||||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 296 CAACCCTCTTGAACCCGTCATCGGAATGTTCCATACCTGGAGTCGCAAGGCTGAAACCGT 355
Query 398 CGCACGTAACCTCTGGCACAATCTGAAGACAGGACCGTCTATGTCGGAAACGGCGTGGGG 457
||| ||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||
Sbjct 356 CGCCCGTAACCTCTGGCACAATCTGAAAACAGGGCCGTCTATGTCGGAAACAGCCTGGGG 415
Query 458 GAAGGTTAATTTGACGGCCAAAGCGATAACAAAAGGAGGATTCGAGTCGCTTTTCAGACA 517
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 416 AAAGGTTAATCTGACGGCGAAAGCGATAACAAAAGGAGGATTCGAGTCGCTTTTCATACA 475
Query 518 GATTTTCGGAACAGAGCCAAACGAGACGCTGAAGAAAACTTTCGCTTGTTATCTCTCGAC 577
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 476 GATTTTTGGAACAGAGCCAAACGAGAAGCTGAAGAAAACTTTCGCTTGTTATCTCTCAAC 535
Query 578 GACGACAGGTCCTGTTGCTGGAACTGTCTATCTTTCGAATGCTCGTGTCGCTTTTTGTAG 637
|||||||||||||| ||||||||| | ||||||||||||||||| ||||| ||||||||
Sbjct 536 TACGACAGGTCCTGTCGCTGGAACTCTGTATCTTTCGAATGCTCGCGTCGCGTTTTGTAG 595
Query 638 CGATCGTCCTCTGTACTTCACAGCACCTTCTGGTCAAGAATCTTGGAGCTACTACAGGGT 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CGATCGTCCTCTGTACTTCACAGCACCTTCTGGTCAAGAATCTTGGAGCTACTACAGGGT 655
Query 698 GGTTG-TACCTTTGGCG-AATGTAGCGACGGTGAATCCGGTGGTGGTGAAAGAGACTCCA 755
|| || ||||||||| | ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 656 GG-TGATACCTTTGG-GAAATGTTGCGACGGTAAATCCGGTGGTGGTGAAAGAGACTCCG 713
Query 756 CCTGAGAAGTATATTCAGTTGACGACGGTGGATGGTCATGACTTCTGGTTCATGGGTTTT 815
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 714 CCTGAGAAGTATATTCAGGTGTCGACGGTGGATGGTCATGACTTCTGGTTCATGGGTTTT 773
Query 816 GTGAATTATGAGAAGGCTACGCATCATCTGCTGACCAGTGTCTCCGATTTTCAAACCGCA 875
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 774 GTGAATTATGAGAAGGCTACGCATCATCTGCTGACCAGTGTCTCGGATTCTCAAACCGCA 833
Query 876 CACGGCTC 883
||||||||
Sbjct 834 CACGGCTC 841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41210873277
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5