BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13220.1
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488138 jgi|Araly1|488138|fgenesh2_kg.6__1272__AT5G13220.1 1061 0.0
> Ahg488138 jgi|Araly1|488138|fgenesh2_kg.6__1272__AT5G13220.1
Length=862
Score = 1061 bits (574), Expect = 0.0
Identities = 790/889 (89%), Gaps = 35/889 (4%)
Strand=Plus/Plus
Query 111 AAGATGTCGAAAGCTACCATAGAACTCGATTTCCTCGGACTTGAGAAGAAACAAACCAAC 170
|||||||||||||||||| |||||||||||||||| || || |||||||| ||||||||
Sbjct 1 AAGATGTCGAAAGCTACCGTAGAACTCGATTTCCTTGGCCTCGAGAAGAAGCAAACCAAT 60
Query 171 AACGCTCCTAAGCCTAAGTTCCAGAAATTTCTCGATCGCCGTCGTAGTTTCCGAGATATT 230
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 AACGCTCCTAAGCCTAAGTTCCAGAAATTTCTCGATCGCCGTCGTAGTTTCCGAGAAATT 120
Query 231 CAAGGTGCGATTTCGAAAATCGATCCGGAGATTATCAAATCGCTGTTAGCTTCCACTGGA 290
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 121 CAAGGTGCGATTTCGAAAATCGATCCGGAGATTATCAAATCACTGTTAGCTTCCGGTGCT 180
Query 291 AACAATTCCGATTCATCGGCTAAATCTCGTTCGGTTCCGTCTACTCCGAGGGAAGATCAG 350
||| |||||||||| || || ||| ||||||||||||||||||| || || |||||||||
Sbjct 181 AACCATTCCGATTCGTCAGCCAAAACTCGTTCGGTTCCGTCTACACCAAGAGAAGATCAG 240
Query 351 CCTCAGATCCCGATTTCTCCGGTCCACGCGTCTCTCGCCAGGTCTAGTACCGAACTCGTT 410
||||||||||||||||||||| |||||||| ||||||||||||| ||||| ||| |||||
Sbjct 241 CCTCAGATCCCGATTTCTCCGCTCCACGCGCCTCTCGCCAGGTCCAGTACGGAAGTCGTT 300
Query 411 TCGGGAACTGTTCCTATGACGAT-TTTCTACAATGGAAGTGTTTCAGTTTTCCAAGTGTC 469
|||||||||||||| |||||||| ||| |||||||||| || || ||||||||||||||
Sbjct 301 TCGGGAACTGTTCCAATGACGATCTTT-TACAATGGAACCGTCTCCGTTTTCCAAGTGTC 359
Query 470 TCGTAACAAAGCTGGTGAAATTATGAAGGTCGCTAATGAAGCAGCATCTAAGAAAGACGA 529
|||||||| |||| |||||||||||||||||||| ||| |||| |||| |||||||||
Sbjct 360 TCGTAACAGGGCTGATGAAATTATGAAGGTCGCTACGGAAACAGCTTCTAGGAAAGACGA 419
Query 530 GTCGTCGATGGAGACAGATCTTTCGGTAATTCTTCCGACCACTCTAAGA-C--CAAAGCT 586
|| ||||||||||||||||||||||||||| |||||| ||||||||| | |||||||
Sbjct 420 ATCACCGATGGAGACAGATCTTTCGGTAATTCCTCCGACAACTCTAAGACCAACAAAGCT 479
Query 587 CTTTGGCCAGAATCTAGAAGGAGATCTTCCCATCGCAAGGAGAAAGTCACTGCAACGTTT 646
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 CTTTGGCCAGAATCTAGATGGAGATCTTCCCATCGCAAGGAGAAAATCACTGCAACGTTT 539
Query 647 TCTCGAGAAGCGCAAGGAGAGATTAGTATCAACATCTCCTTACTATCCGACATCGGCCTA 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCTCGAGAAGCGCAAGGAGAGATTAGTATCAACATCTCCTTACTATCCGACATCGGCCTA 599
Query 707 AACGATCTCTTTTT-AGATTGGGACATGGACCAAATTTGTCTTTTTCAATCGGAAGACAT 765
| |||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 600 AGCGATCTCTTTTTTAGATTGGGACATGGACCAAATTTGTCATTTTCAAT---------T 650
Query 766 CCATGTTCGTTTTTGGATTTGGCTTATTTCCAATCTTCTTTTGAAGCCTTCTTCGTCGTT 825
| | | | ||||||| |||| ||||||| ||||||||| |||||||||||||
Sbjct 651 ---T-T--G-----G-ATTTGGCCTATTCCCAATCT-CTTTTGAAGACTTCTTCGTCGTT 697
Query 826 GCTAAATCGTATACTATTCACGACAAACGTTTTTAGGAGATTACGTTACCTACTAAGATT 885
|||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 698 GCTAAATCGTATCCTATTCACGACA--CGTTTTTAGGAGATTACGTTACCTTCTAAGATT 755
Query 886 ATATATAT-TGGT-TTGTTTTTAAAAATGTCTATTATCTTTATTGTCATTGATAGCTT-G 942
|||||||| | || |||||||| |||||| ||||||||||| ||||||| | | ||| |
Sbjct 756 ATATATATATAGTATTGTTTTTTTAAATGTTTATTATCTTTAATGTCATTCACA-CTTTG 814
Query 943 ATTTAAGAAGCTCTCTCTTATCCCGTGACCTTCTACttttgttttattt 991
||| |||||||||||| ||||| |||||| | ||||| |||||||||||
Sbjct 815 ATTGAAGAAGCTCTCTGTTATCTCGTGACAT-CTACTCTTGTTTTATTT 862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37894179498
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5