BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13240.1
Length=1058
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488140 jgi|Araly1|488140|fgenesh2_kg.6__1274__AT5G13240.1 1384 0.0
> Ahg488140 jgi|Araly1|488140|fgenesh2_kg.6__1274__AT5G13240.1
Length=974
Score = 1384 bits (749), Expect = 0.0
Identities = 912/984 (93%), Gaps = 38/984 (4%)
Strand=Plus/Plus
Query 68 CGTTTTTTCAGGTTTATCATTGTTTATCGCATCTTTCTGGAGGATCTAGCCG---CTGCT 124
||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 22 CGTTTTTTCAGGTGTATCATTGTTTATCGCATCTTTCTGGAGGATCTAGCCGCTACTACT 81
Query 125 ATCATGAAGTTCTTGGAGTACACTAACCTAGACAGATTGAATGTTTTTCTGGGTCATCTT 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 ATCATGAAGTTCTTGGAGTACACTAACCTAGACAGATTGAATGTTTTTCTGGGTCATCTA 141
Query 185 AATCTCGGGGAAAGGACTATCAAAGGTTGCTTGGAAGCTTATTCTTGCAAACATGCAGGA 244
|||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 142 AATCTCGGGGAAAGAACTATCAAAGGTTGCTTGGAAGCCTACTCTTGCAAACATGCAGGA 201
Query 245 AGTGATAAAAGATTGTCTCTTAGTTTGGAGAATGAGATGCTTGATTATCTTGGGAAATCT 304
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 202 TCTGATAAAAGATTGTCTCTTAGTTTGGAGAATGAGATGCTCGATTATCTTGGGAAATCG 261
Query 305 TCTGACACCGACTCTTCTTCACCCGTTGATCTCTTGTTAAGCAGATCAAGTCGAAAGGCT 364
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 TCTGACACTGACTCTTCTTCACCCGTTGATCTCTTGTTAAGCAGATCAAGTCGAAAGGCT 321
Query 365 TTGATCTACTTGGTTCTTACGCTCTATCAAATGTATCCGGACTACGATTTCAGCGCTGTC 424
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 322 TTGATCTACTTGGTTCTTACGCTCTATCAGATGTATCCGGACTACGATTTCAGCGCTGTG 381
Query 425 AAAGCACATCAGTTTTTCTCGGAGGAAAGCTGGGACACCTTTAAGCAGATTTTTAACAAC 484
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 382 AAAGCACATCAGTTTTTTTCGGAGGAAAGCTGGGACACGTTTAAGCAGATTTTTAACAAC 441
Query 485 TATATGTTTGAAGCTTCTAAGGAATGGACTGAGAGGAATGAGGATGGTTCCCTTCTTGAG 544
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 442 TATATGTTTGAAGCTTCTAAGGAATGGACTGAGAAGAATGAGGATGGTTCCCTTCTTGAG 501
Query 545 GTGATCTACAAGGCTCTTGATGAGGTCGTAAAACTAGCTGAATGTGAGATATATGTTTAC 604
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 502 GTGATCTACAAGGCTCTTGATGAGGTTGTAAAACTAGCAGAATGTGAGATATATGTTTAC 561
Query 605 AATCCAAATCCTAATGCTGATCCTTTCCTCGAGGAAGGAGCAATATGGTCTTTCTGTTTC 664
|| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 562 AACCCAAATCCTAATGCTGATCCGTTCCTAGAGGAAGGAGCAATATGGTCTTTCTGTTTC 621
Query 665 TTATTCTACAACCGAAAACTGAAGCGCGTTGCGGGTTTTCGTTTCTCCTGCACGAGTAAC 724
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 622 TTATTCTACAACCGAAAACTGAAGCGCGTTGCGGGTTTTCGTTTCTGCTGCACGAGTAAC 681
Query 725 CTGGCAAATGATGCATTTCTCACTGACAGTCCTCCATATGAAGAGGATGAAGAGATCTTT 784
||||||| ||||||||||||||||||||||||||| |||| ||| |||||||||||||||
Sbjct 682 CTGGCAAGTGATGCATTTCTCACTGACAGTCCTCCGTATGGAGAAGATGAAGAGATCTTT 741
Query 785 GCCGACATGGATATGTGATCTCTGTATCGTTATGCTGAGTCACATATTCTGTGGAAACCT 844
|||||||||||||||| ||||||||||||||| ||||||| | | | | | |
Sbjct 742 GCCGACATGGATATGTAATCTCTGTATCGTTAAGCTGAGT-A-A-A--C--------C-T 787
Query 845 GTATCTATGTGACTATGTGTGATCTCTAGTCTCTAGGCTTGTATGAGTCCGAGTCGAAGT 904
||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 788 GTATCTATGTG--T--G----ATCTCTAGTCTCTAGGCTTGTATGAGTCCGAGTC----- 834
Query 905 CCAAGGTTAAGCTCTTCGCTTTCCTTTATCTGTGTAGTTGACGTGACTACTAATAATACT 964
| |||||||||||||| ||||||||||||||||||||||||| |||||| | |||||||
Sbjct 835 C-AAGGTTAAGCTCTTTGCTTTCCTTTATCTGTGTAGTTGACCTGACTA--A-TAATACT 890
Query 965 CTGTACTATGTCATGTGCAAATA-CTTATCAGGCATTGTCGTAATCTAATGTACCTAAAT 1023
||||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 891 CTGTACT--GTCATGTGCAAA-AGCTTATCAGGCATTGTCGTAATCTTTTGTACCTAAAT 947
Query 1024 TCAACTGAAGAGaaaaaaaGTTGA 1047
||||||||||||| ||| ||||||
Sbjct 948 TCAACTGAAGAGACAAAGAGTTGA 971
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39380973261
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5