BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13250.1
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940791 jgi|Araly1|940791|scaffold_601335.1 1354 0.0
> Ahg940791 jgi|Araly1|940791|scaffold_601335.1
Length=892
Score = 1354 bits (733), Expect = 0.0
Identities = 840/889 (94%), Gaps = 17/889 (2%)
Strand=Plus/Plus
Query 198 TCCGGTCACCGGACTCTGCCATGGTTTCTGCTGCTGAATCCTCTTCCTCCACGTCAACGC 257
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 TCCGGTCACCGGATTCTGCCATGGTTTCTGCTGCTGAATCCTCTTCCTCCTCGTCAACGC 60
Query 258 TTCTTCTTCCATGTGCGTTTGCCAACAGTTTTGCTTTTATGAGGTTATTACAAAAAACTC 317
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 TTCTTCTTCCATGTGCATTTGCCAACAGTTTTGCTTTTATGAGGTTATTACAAAAAGCTC 120
Query 318 ATCACTTCTCTGCCGTCTCTGAGGACGACGACAACAACAAAGAC-ATTCACTTAGGATCT 376
|||||||| ||||||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct 121 ATCACTTCGCTGCCGTCTCTGAGGACGACGACAACAACAAAG-CAATTCGCTTAGGATCT 179
Query 377 GATCATCATCAGGCAAAAGATAATAATCATCACCAAGTTTTTAGGAGAGAGTGTAGTTTC 436
| |||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||
Sbjct 180 G---ATCATCAGGCAAAAGATAATAACCATCACCAAGTTTGTAGGAGAGATTGTAGTTTC 236
Query 437 ATGGCCGATCAAGAAGAGCCGAGGAGTACTACTTCTAGGTTAAGCTCCAAGGAGGACGAC 496
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 237 ATGGCCGATCAAGAAGAGCCGAGGAGTACTACTTCTAGGTTAAGCTCCAAGGACGACGAC 296
Query 497 CACGacaacaatagcaataacaacaatattaataataataacaacaacGAAGCCGAAGAT 556
|||||||||||||||||||| || |||| | |||||| |||||||||||||||||||||
Sbjct 297 CACGACAACAATAGCAATAATAATAATA--A-TAATAACAACAACAACGAAGCCGAAGAT 353
Query 557 CATGAGATGAGACAACAAGGGTGGCTCCGGTTAAGCTTAGGTCACGAGGAGGACGTTAAA 616
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 354 CATGAGATGAGACAACAAGGGTGGCTCCGGTTAAGCATAGGCCACGAGGAGGACGTTAAA 413
Query 617 CCGGATCTCGACCATCGGCAGCAACATCAAACTGATCCAACGGCTAGGAGAGACTCTTTT 676
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 414 CCGGATCTCGACCATCGGCAGCAACATCAAACCGATCCAACGGCTAGGAGAGACTCTTTT 473
Query 677 CTAGAGCTTAACCTTTCCTCTGGCGGTTCAAATAGAGAAGAAGAAGTTGGTCTTCCATTG 736
|||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 474 CTAGAGCTTAACCTTTTCTCTGGCGGTTTAAATAAAGAAGAAGAAGTTGGTCTTCCATTG 533
Query 737 TCATCTCTCTTTCATCATCAGCATCAAGCCGGAGGGATGATGATTAATCCATTGATGTTC 796
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 534 TCATCTCTCTTTCATCATCAGCATCAACCCGGAGGGATGATGATTAATCCATTGATGTTC 593
Query 797 CATA-CAAGGCCTCAGGATATGATTGGTCCTTGGGCGGCGGCTGCGTTTAGAACGCCTTT 855
|||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 594 CATAACA-GGCCTCAGGATATGATTGGTCCTTGGGCGGCCGCTGCGTTTAGAACGCCTTT 652
Query 856 TGTCCCACAAAACCTAACACAACCATCATCATCATCATCTGGTTCTTTGATGATGCCATT 915
|||||||||||||||||||||||||||||||||||| | | |||||||||||||||| |
Sbjct 653 TGTCCCACAAAACCTAACACAACCATCATCATCATC-T--GCTTCTTTGATGATGCCACT 709
Query 916 GATGGGAC-AGTACTTTGGTCGCTCTAGTTTTCAGCCGCAGTTAATAGGGAATGATAACC 974
|||||||| | |||||||| ||||| |||||||||||||||||| ||||||||||||| |
Sbjct 710 GATGGGACCA-TACTTTGGCCGCTCCAGTTTTCAGCCGCAGTTATTAGGGAATGATAATC 768
Query 975 CGGATGGGGTGGCAGGTCCAAGCTCGAGTTTAAGAGTCATTGATCCTCCCAGACGACCCC 1034
|||||| |||||| ||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 769 CGGATGTGGTGGCCGGTCCAAGCTCGAGTTTTCGAGTCATTGATCCTCCCAGACGGCCCC 828
Query 1035 ATTCCGGCATTTGGTTTCTCCTTCAAGCTTCTCAAAACCAG-ACAGTAG 1082
||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 829 ATTCCGGCATTTGGTTTCTCCTTCAAGCTTCTCAAAACCAGTA-AGTAG 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56602104070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5