BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13260.1
Length=1955
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488142 jgi|Araly1|488142|fgenesh2_kg.6__1276__AT5G13260.1 2953 0.0
> Ahg488142 jgi|Araly1|488142|fgenesh2_kg.6__1276__AT5G13260.1
Length=1860
Score = 2953 bits (1599), Expect = 0.0
Identities = 1776/1861 (95%), Gaps = 13/1861 (1%)
Strand=Plus/Plus
Query 95 CAAGAAGAAGAAGATCTAGGTTTTGCA--TCTCTCGTCATTACAATGGAGCGAGCACGAA 152
||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||
Sbjct 1 CAAGAAGAAGAAGATCTAGGTCTTGCATCTCTCTCTTCATTACAATGGAGCGAGCACGAA 60
Query 153 CCGAAAGCCCTAGCTACTTCCGTCAATGGAGCGGCGATTCAGGTACCACCAATGCCGCCG 212
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 CCGAAAGCCCTAGCTACTTCCGTCAATGGAGCGGCGATTCAGGTTCCACCAATGCCGCCG 120
Query 213 CCGTAGCTCCTTCTTCTCCGGCGCGTCATCACCACGCTCGATCTTCTTCCGTCACTAATA 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCGTAGCTCCTTCTTCTCCGGCGCGTCATCACCACGCTCGATCTTCTTCCGTCACTAATA 180
Query 273 TGTCTAACGTCAAACGAGCTCAAAACGTTGCTGCTAAAGCCGCTGCTCAGAGACTTGCTA 332
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 181 TGTCTAACGTCAAACGAGCTCAAAACGTCGCTGCTAAAGCCGCTGCTCAAAGACTTGCTA 240
Query 333 AAGTCATGGCTTCTCAGACCAACAatgatgacgacgatgacgatgatgatgatgaagtcg 392
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 AAGTCATGGCTTCACAGACCAACAATGATGACGACGATGACGATGATGATGATGAAATCG 300
Query 393 gtggtgatgatTTAGGTTTCCGATATGGTGCTCCTCCTCCTCTTTCCTTCACTAGAAATC 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTGGTGATGATTTAGGTTTCCGATATGGTGCTCCTCCTCCTCTTTCCTTCACTAGAAATC 360
Query 453 CTTCTTCCACAATTGCTAAACCTAAACCTGTTGCTTCTTCTGCTGTTGTTCCTCCTCCTA 512
|||||||||||||||||||||||||||||||||||||| ||| || |||||||||||| |
Sbjct 361 CTTCTTCCACAATTGCTAAACCTAAACCTGTTGCTTCTGCTGTTGCTGTTCCTCCTCCCA 420
Query 513 AGATCTCTAGATCTTCCTCCCCTGCGAACTCTCCAGCTGTGTCTGTTCGGGCATCGCAAC 572
||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |
Sbjct 421 AGATCTCTAGATCTTCCTCTCCTGCGAACTCCCCAGCCGTGTCTGTTCGGGCATCGCAGC 480
Query 573 CGCCTGTTCCACCGAGTAAACTG------AGGAATCAAACTACCAATCCTTTACCAGTTG 626
|||||||||| |||||||||||| ||| |||||||||||||||| | ||| ||||
Sbjct 481 CGCCTGTTCCGCCGAGTAAACTGTCTCAAAGGCATCAAACTACCAATCCATCACCGGTTG 540
Query 627 CAACTCCTAAGACTGAAAAGAGGGTTTTAGCTGATATTGGTCATTTTAATGGAAAAGATT 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 541 CAACTCCTAAGACTGAAAAGAGGGTTTTAGCTGATATTGGTCATTTTAATGGAAATGATT 600
Query 687 CGAAAGATCAGCATGAAGCATCTGCACTTCGTGACGAACTTGATATGCTGCAAGAGGAGA 746
||| ||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 601 CGAGAGATCAGCACGAAGCATCCGCACTTCGTGATGAACTTGATATGCTGCAAGAGGAGA 660
Query 747 ATGATAGTATACTTGAAAAGCTTAGGCTTGAGGATGAGAAATGCAAGGAAGCAGAAGCTA 806
|||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 661 ATGACAGTATTCTTGAAAAGCTTAGGCTTGAGGATGAGAGATGCAAGGAAGCAGAAGCCA 720
Query 807 GGGTGAGAGAGCTTGAAAAACAGGTAACTTCTCTGGGAGAAGGTGTATCATTGGAAGCTA 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGGTGAGAGAGCTTGAAAAACAGGTAACTTCTCTGGGAGAAGGTGTATCATTGGAAGCTA 780
Query 867 AACTTCTGAGCCGAAAAGAAGCAGCTTTGCGTCAAAGAGAGGCGGCCCTCAAAGATGCAA 926
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 781 AACTTCTGAGCCGAAAAGAAGCTGCTTTGCGTCAAAGAGAGGCGGCCCTCAAAGATGCAA 840
Query 927 GGCAGAATAGAGATGGGACTAATAGAGAGACTACTGCTCTTCGGTCTCAAGTAGAGACTG 986
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 841 GGCAGAATAGAGATGGGACTAATAAAGAGACTACTGTTCTTCGGTCTCAAGTAGAGAATG 900
Query 987 CAAAACTGGAGACCGCTGCTATAGTAGCACAACTTCAAGGAGCAGAATCTGAAGTCAATG 1046
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 901 CAAAACTCGAGACCGCTGGTATAGTAGCACAACTTCAAGGAGCAGAATCTGAAGTCAACG 960
Query 1047 GTCTACGGACAATGACGCATAGAATGATATTGACCCAAAAGGAGATGGAGGAAGTTGTTC 1106
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 961 CTCTACGGACAATGACGCATAGAATGATATTGACCCAAAAAGAGATGGAGGAAGTTGTTC 1020
Query 1107 TTAAGCGGTGCTGGCTAGCTCGGTATTGGGGTCTAGCTTCCAGATATGGAATATGTTCGG 1166
|||| ||||||||||||||||||||||||||| | ||| |||||||||| ||||||||||
Sbjct 1021 TTAAACGGTGCTGGCTAGCTCGGTATTGGGGTTTGGCTGCCAGATATGGCATATGTTCGG 1080
Query 1167 ATATAGCTACGTCCAAGTACGAATACTGGTCATCTCTGGCTCCTCTTCCTTTTGAAATTG 1226
|||| ||||| || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1081 ATATTGCTACATCGAAGTACGAATACTGGTCATCTCTGGCACCTCTTCCTTTTGAAATTG 1140
Query 1227 TGCTGTCAGCTGGACAGAAGGCTAAAGAAGAAAGTTGGGAAAAAGAATCTGAGGAGAACG 1286
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TGCTGTCAGCTGGGCAGAAGGCTAAAGAAGAAAGTTGGGAAAAAGAATCTGAGGAGAACG 1200
Query 1287 AGAAGAGGAGCCAGCTCGTTCAAGATATAAATGATCTAACAGGAGAAGGAAATATTGAAA 1346
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1201 AGAAGAGGAGCCAGCTCGCTCAAGATATAAATGATCTAACAGGAGAGGGAAATATTGAAA 1260
Query 1347 GTATGCTCTCTGTGGAAATGGGTCTAAAGGAGCTAACTTCTTTAAAGGTTGAAGTTGCCA 1406
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1261 GTATGCTCTCTGTGGAAATGGGTCTAAAGGAGCTAACTTCTTTGAAGGTTGAAATTGCCA 1320
Query 1407 TTACTATTACATTAGCCCAGCTAAGGTTGGCCAATACTACTCGACTGTCTGATATCGAGT 1466
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1321 TTACTATTACATTAGCCCAGCTAAGGTTGGCCAATACTACTCGGCTGTCTGATATCGAGT 1380
Query 1467 TAAAATCACCAGGTGGTCCTAAGATTACGGAGACACTTGAATTGAGTCAAGAAGAGTCTG 1526
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1381 TAAAATCACCAGGTGGTCCTAAGATTACGGAGGCCCTTGAATTGAGTCAAGAAGAGTCTG 1440
Query 1527 AGGATGTTCTCTTCAAGGAGGCTTGGCTCACGTACTTCTGGAGAAGAGCACAATCCCTTG 1586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 AGGATGTTCTCTTCAAGGAGGCTTGGCTCACGTACTTCTGGAGAAGAGCACAATCCCTTG 1500
Query 1587 GCATAGAAGTGGACACTGCGAGAGAACGTCTTAGATTTTGGATCAGCAGGAGCGCACATT 1646
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1501 GCATAGAAGTGGACATTGCGAGAGAACGTCTTAGATTCTGGATCAGCAGGAGCGCACACT 1560
Query 1647 CTCCATCTTCACATGACGCCATGGAAGTTGAGCAAGGACTAACAGAGCTAAGAAAGCTGC 1706
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1561 CTCCATCTTCACATGACGCCATGGAAGTTGAACAAGGTCTAACAGAGCTAAGAAAGCTGC 1620
Query 1707 GGATAGAACGTAGATTGTGGGAAGCCTCCAGGTCCAGCCAGTAAGTAGTGACCTTGGGGA 1766
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1621 GGATAGAACGTAGATTGTGGGAAGCCTCTAGGTCCAGCCAGTAAGTAGTGACCTTGGGGA 1680
Query 1767 CCTCGGGATCCCAGAACAGTCTTGCTACCACAGCTTTAACAGTACTGTATATCGTACATG 1826
|||| ||||||||| ||||| || ||||||| |||||||||||||||||||||||||||
Sbjct 1681 CCTCAAGATCCCAGAGCAGTCATGTTACCACATCTTTAACAGTACTGTATATCGTACATG 1740
Query 1827 CTTTCTTC-TCGTGTGGTTGGGGTACTTTGCAGTCAGAAAAATGTTT---CCAGTTTTGT 1882
|||||||| || ||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1741 CTTTCTTCCTC-TGTGGTTCATGTACTTTGCAGTCAGAAAAATGTTTAATCCAGTTTTGT 1799
Query 1883 AAACCGAAGAATTGTATTACACGCACTACTTTTGACATATAATATATCCACGTTTTCACG 1942
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1800 GAACCGAAGAATTGTATTACACGCACTACTTTTGACATATAATATATCCACGTTTCCACG 1859
Query 1943 T 1943
|
Sbjct 1860 T 1860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73476082605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5