BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13280.1
Length=1970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940794 jgi|Araly1|940794|scaffold_601338.1 2867 0.0
> Ahg940794 jgi|Araly1|940794|scaffold_601338.1
Length=1755
Score = 2867 bits (1552), Expect = 0.0
Identities = 1697/1764 (96%), Gaps = 21/1764 (1%)
Strand=Plus/Plus
Query 57 TTCTTCTTCTTCCTCCTCTCAAATGGCGGCTACTAGGGTTCGTTGTTGTCATAGCAATGC 116
||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1 TTCTTCTTCTTCCTCTTCTCCAATGGCGGCTACTAGGGTTCGGTGTTGTCATAGCAATGC 60
Query 117 AGCTTTCACCAGATTGCCACT-TACCCGCCACCGAAACTCGCCGACGCTACCGATTTCTC 175
| |||||||||||||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct 61 ACCTTTCACCAGATTGCC-TTATACCCGCCACCGAAACTCGCCGACGCCACCGATTTCTC 119
Query 176 TAAATCGTGTCGATTTCCCTACGCTGAA------GA--A-ATTATCATTACCCATTGGAG 226
| ||||||||||||||| || ||||||| || | ||||||||||||||||||||
Sbjct 120 TGAATCGTGTCGATTTCTCTGCGCTGAAGTGCTCGAGGAGATTATCATTACCCATTGGAG 179
Query 227 ATGGCTCCTCCATTAGAAAGGTTTCAGGTTCAGGCAGCAGAAACATTGTGCGAGCTGTGT 286
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 180 ATGGCTCCTCCATTAGAAAGGTTTCAGGTTCACGCTGCAGAAACATTGTGCGAGCTGTGT 239
Query 287 TGGAAGAGAAGAAGACAGAGGCGA-TAACGGAGGTAGATGAGAAGGGTA-TCACGTGCGT 344
||| | || ||||||||||||| | |||||||||||||||| ||||| | || |||||||
Sbjct 240 TGG-A-AG-AGAAGACAGAGGC-ATTAACGGAGGTAGATGATAAGGG-ATTCTCGTGCGT 294
Query 345 GATGAAGTTTGGTGGATCTTCGGTGGCGTCAGCTGAGAGAATGAAGGAAGTTGCTGATTT 404
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 295 GATGAAGTTTGGTGGATCTTCGGTGGCGTCAGCTGAGAGAATGAAGGAAGTTGCGGATTT 354
Query 405 GATTTTGACTTTTCCGGAAGAAAGTCCCGTCATTGTTCTCTCTGCTATGGGGAAAACTAC 464
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 355 GATTTTGACTTTTCCGGAAGAAAGTCCCGTCATTGTTCTCTCTGCAATGGGGAAAACTAC 414
Query 465 CAACAATCTCTTGCTTGCGGGAGAGAAGGCGGTTAGTTGTGGTGTTTCTAATGCATCTGA 524
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 415 CAACAATCTCTTGCTTGCGGGAGAGAAGGCGGTGAGTTGTGGTGTTTCTAATGCATCTGA 474
Query 525 GATTGAGGAGTTGAGCATTATAAAGGAATTGCATATCAGGACGGTGAAAGAGCTCAACAT 584
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GATTGAGGAATTGAGCATTATAAAGGAATTGCATATCAGGACGGTGAAAGAGCTCAACAT 534
Query 585 TGATCCCTCTGTTATTTTGACCTATTTGGAGGAACTGGAGCAACTCCTGAAAGGCATTGC 644
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 535 TGATCCCTCTGTTATTTTGACCTATTTGGAAGAACTGGAGCAACTCCTGAAAGGCATTGC 594
Query 645 CATGATGAAGGAATTGACACTTCGAACCAGAGATTACTTAGTCTCTTTTGGAGAGTGTTT 704
|||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||| ||
Sbjct 595 CATGATGAAGGAGTTGACACTTCGTACCAGAGACTACTTGGTCTCTTTTGGAGAGTGCTT 654
Query 705 GTCTACAAGGATTTTTGCTGCTTATCTTAATACAATCGGTGTCAAGGCACGCCAATATGA 764
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GTCAACAAGGATTTTCGCTGCTTATCTTAATACAATCGGTGTCAAGGCACGCCAATATGA 714
Query 765 TGCATTTGAAATTGGTTTCATTACAACGGATGATTTCACAAATGGGGATATCCTGGAGGC 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TGCATTTGAAATTGGTTTCATTACAACGGATGATTTCACAAATGGGGATATCCTGGAGGC 774
Query 825 AACTTATCCAGCTGTTGCCAAGAGATTATATGATGATTGGATGCATGATCCTGCTGTTCC 884
|||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 775 AACTTATCCAGCCGTTGCCAAGAGATTATATGATGATTGGGTGCATGATCCCGCTGTTCC 834
Query 885 TATTGTAACAGGTTTCCTTGGGAAGGGTTGGAAAACTGGTGCGGTTACTACCTTGGGTAG 944
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 835 TATTGTAACAGGTTTCCTCGGGAAGGGTTGGAAAACAGGTGCGGTTACTACCTTGGGTAG 894
Query 945 GGGTGGCAGTGATTTGACGGCAACCACAATTGGTAAAGCGTTGGGTTTGAAAGAGATTCA 1004
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 895 GGGTGGCAGTGATTTGACGGCAACCACAATTGGTAAAGCATTGGGTTTGAAAGAGATTCA 954
Query 1005 GGTGTGGAAAGATGTCGATGGTGTTCTAACATGTGACCCTACTATATATAAGCGAGCTAC 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 955 GGTGTGGAAAGATGTCGATGGTGTTCTAACATGTGACCCTACTATATATAAGCAAGCTAC 1014
Query 1065 ACCAGTACCATATCTGACATTTGACGAAGCAGCCGAGCTAGCTTATTTTGGTGCACAGGT 1124
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1015 ACCAGTACCATTTCTGACATTCGACGAAGCAGCCGAGCTAGCTTATTTTGGTGCACAGGT 1074
Query 1125 CTTGCACCCACAGTCAATGAGACCAGCAAGAGAGGGTGAGATTCCTGTTAGGGTTAAAAA 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CTTGCACCCACAGTCAATGAGACCAGCAAGAGAGGGTGAGATTCCTGTTAGGGTTAAAAA 1134
Query 1185 TTCTTATAACCCTAAGGCTCCTGGAACTATCATCACTAAAACAAGAGACATGACCAAGAG 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 TTCTTATAACCCTAAGGCTCCTGGAACTATCATCACTAAAACAAGAGACATGACCAAGAG 1194
Query 1245 TATTCTAACGAGCATTGTTCTGAAACGTAATGTGACCATGCTGGATATAGCAAGCACCCG 1304
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1195 CATTCTAACGAGCATTGTTCTGAAACGCAATGTGACCATGCTGGATATAGCAAGCACCCG 1254
Query 1305 AATGCTTGGTCAAGTTGGCTTTCTTGCAAAGGTATTCTCGATATTTGAGGAGCTTGGCAT 1364
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 AATGCTTGGTCAAGTTGGTTTTCTTGCAAAGGTATTCTCGATATTTGAGGAGCTTGGCAT 1314
Query 1365 TTCCGTAGATGTTGTTGCCACTAGTGAAGTCAGTATATCTCTGACACTGGATCCTTCAAA 1424
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1315 TTCCGTAGATGTTGTTGCCACTAGTGAAGTCAGTATATCTCTGACACTGGACCCTTCAAA 1374
Query 1425 ACTTTGGAGCAGAGAACTGATTCAACAGGAGCTTGATCATGTAGTTGAAGAACTGGAGAA 1484
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 ACTTTGGAGCAGGGAACTGATTCAACAGGAGCTTGATCATGTAGTTGAAGAACTGGAGAA 1434
Query 1485 AATTGCAGTTGTGAATCTTCTAAAAGGAAGAGCAATCATCTCTCTAATTGGGAATGTTCA 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1435 AATTGCAGTTGTGAATCTTCTAAAAGGAAGAGCAATCATCTCTCTAATTGGGAATGTGCA 1494
Query 1545 ACATTCCTCCCTGATTTTAGAGAGGGCGTTTCATGTTCTTTATACCAAAGGTGTCAATGT 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 ACATTCCTCCCTGATTTTAGAGAGGGCGTTTCATGTTCTTTATACCAAAGGTGTCAATGT 1554
Query 1605 CCAGATGATATCACAAGGAGCATCCAAGGTAAACATTTCCTTTATAGTAAACGAAGCTGA 1664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CCAGATGATATCACAAGGAGCATCCAAGGTAAACATTTCCTTTATAGTAAACGAAGCTGA 1614
Query 1665 AGCTGAAGGTTGTGTTCAGGCTCTTCACAAATCCTTCTTCGAGAGCGGTGACCTCTCAGA 1724
||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1615 AGCTGAAGGATGCGTTCAGGCTCTTCACAAATCCTTCTTTGAGAGCGGTGACCTCTCAGA 1674
Query 1725 GTTATTGATACAACCCAGACTTGGCAACGGGTCACCTGTCAGGACACTGCAAGTAGAAAA 1784
|||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1675 GTTATTAATACAACCCAGACTTGGCAACGGGTCACCTGTGAGGA---TGCAAGTAGAAAA 1731
Query 1785 TTGACTCGACAAGCTTATTGCTTG 1808
||||||||||||||| ||||||||
Sbjct 1732 TTGACTCGACAAGCTCATTGCTTG 1755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74047436280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5