BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13290.2
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893233 jgi|Araly1|893233|Al_scaffold_0006_1229 1947 0.0
> Ahg893233 jgi|Araly1|893233|Al_scaffold_0006_1229
Length=1209
Score = 1947 bits (1054), Expect = 0.0
Identities = 1160/1211 (96%), Gaps = 7/1211 (1%)
Strand=Plus/Plus
Query 218 AGCAATGAAGCAAAGAAGAAGAAGAAATGGATGTAGTAGTAGCAACACTATCTCTCTACT 277
||||| |||| ||||||||||||||||||| | |||||||||||||||||||||| ||
Sbjct 5 AGCAAAGAAG--AAGAAGAAGAAGAAATGGA--T-GTAGTAGCAACACTATCTCTCTGCT 59
Query 278 CTTATTATTCTTCTTAGTCTTCTTTTCAAGAACAAGCACAAGTACAAGTTGTCGTAGAAG 337
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 60 CTTATTCTTCTTTTTAGTCTTCTTTTCAAGAACAAGCACAAGTACAAGTTGTCGTCGAAG 119
Query 338 AACTGTTAAACACTTATCCACAACTTCAACATCATCTACACCACTTGAATCAAGAATCAC 397
|||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 120 AACTGTGAAACACTTGTCCACAACTTCAACATCATCTACACCACTCGAATCAAGAATCAC 179
Query 398 TTCCAAGGTTATTG-TGATTAGTATCGTCTCAGGGATTTTAACAGGGTTGGTTTCAGCTT 456
|||||||||||||| || | || ||||| |||||||||||||| ||||||||||| ||||
Sbjct 180 TTCCAAGGTTATTGTTG-TCAGCATCGTTTCAGGGATTTTAACCGGGTTGGTTTCGGCTT 238
Query 457 TGGTGTTAGCTTTCTTGGTTCGTAGCATTGTCAAATTCATGAAACAGACGCCAATTCTCA 516
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TGGTGTTAACTTTCTTGGTTCGTAGCATTGTCAAATTCATGAAACAGACGCCAATTCTCA 298
Query 517 AAGGTCCAGTGGTGTTTTCTCCTAAGATTACTCCTAAATCTCTCCACGCAGCTCTCAGTA 576
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 299 AAGGTCCTGTGGTGTTTTCTCCTAAGATTACTCCTAAATCTCTTCACGCAGCTCTCGGTA 358
Query 577 ATGGTATTCAGTTGCTTGGCTCTGACCTTAATGGTAAATACTATAAGATGGTTCTTGATA 636
|||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||
Sbjct 359 ATGGTATTCAGTTGCTTGGCTCAGACCCTAATGGTAAATACTATAAGATGGTACTTGATA 418
Query 637 ATGGTCTAGTGGTTGCAGTCAAGAGACTAGGCTCACTTGAAGGAGTTGGTTCACCAGAAA 696
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 419 ATGGTCTAGTGGTTGCAGTCAAGAGACTAGGCTCACTTGAAGGAATTGGTTCACCAGAAA 478
Query 697 GTAGTAGTAGCAAGTCGGTTAAGAGAAGGTTGCAGAAGGAACTTGAGCTTCTTGCTGGGT 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GTAGTAGTAGCAAGTCGGTTAAGAGAAGGTTGCAGAAGGAACTTGAGCTTCTTGCTGGGT 538
Query 757 TAAGGCATAGGAACCTTATGAGTTTACGAGCTTATGTTCGCGAATCTGATGAGTTCTCTC 816
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 539 TAAGGCATAGGAACCTTATGAGTTTACGGGCTTATGTTCGCGAATCCGATGAGTTCTCTC 598
Query 817 TGGTCTATGATTACATGCCTAATGGTAGCCTTGAGGATGTGATGAATAAAGTTAGAACGA 876
| ||||||||||| ||||| |||||||||||||||||||||||| |||| ||||||||||
Sbjct 599 TCGTCTATGATTATATGCCGAATGGTAGCCTTGAGGATGTGATGCATAAGGTTAGAACGA 658
Query 877 AAGAGGTAGAGCTTGGATGGGAGATTAGGCTTAGAGTTGCAGTTGGAATTGTGAAAGGGC 936
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AAGAGGTAGAGCTTAGATGGGAGATTAGGCTTAGAGTTGCAGTTGGAATTGTGAAAGGGC 718
Query 937 TTCAGTATCTTCATTTCAGTTGTGAGACCCAGATTCTTCATTATAACCTGAAACCTACAA 996
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 719 TTCAGTATCTTCATTTCAGTTGTGAGACACAGATTCTTCATTATAACTTGAAACCTACAA 778
Query 997 ATGTGATGTTGGATTCTGAGTTTGAGCCTCGGCTTGCTGATTGTGGATTGGCCAAGATCA 1056
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 779 ATGTGATGTTGGATTCTGAGTTTGAGCCTCGGCTTGCTGATTGTGGATTGGCTAAGATCA 838
Query 1057 TGCCTAGTTCACACACAGCGGTATCTTGCTACTCTGCCCCTGAGTCCTCTCAAAGTAACA 1116
||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 839 TGCCTAGCTCACACACAGCGGTATCTTGCTACTCTGCTCCTGAGTCTTCTCAAAGTAACA 898
Query 1117 GATACACAGACAAAAGCGACATATTCAGCTTTGGGATGATATTGGGTGTTCTTTTAACCG 1176
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 899 GATACACAGACAAAAGCGACATATTCAGCTTCGGGATGATATTGGGTGTTCTTTTAACCG 958
Query 1177 GAAGAGACCCGACCCACCCGTTCTGCGAAGAGTCTGCAAGCGGAGGTAGCTTAGGACAGT 1236
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 959 GAAGAGACCCGACCCACCCGTTCTGTGAAGAGTCTGCAAGCGGAGGCAGCTTAGGACAGT 1018
Query 1237 GGCTGAAACATTTACAACAGTCTGGGGAAGCACGAGAAGCATTAGATAAGACTATTCTTG 1296
||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |
Sbjct 1019 GGCTGAAACATTTACAACAATCCGGGGAAGCACGTGAAGCATTAGATAAGACTATTCTAG 1078
Query 1297 GAGAGGAAGTGGAGGAAGACGAAATGTTAATGGCTTTAAGAATCACCATCATCTGCCTTT 1356
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1079 GAGAGGAAGTGGAGGAAGACGAGATGTTAATGGCTTTAAGAATCACCATTATCTGCCTTT 1138
Query 1357 CTGACTTTCCGGCAGACCGGCCTTCAAGTGATGAGCTTGTCCACATGCTTACACAACTGC 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CTGACTTTCCGGCAGACCGGCCTTCAAGTGATGAGCTTGTCCACATGCTTACACAACTGC 1198
Query 1417 ACAGCTTTTAG 1427
|||||||||||
Sbjct 1199 ACAGCTTTTAG 1209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56487833335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5