BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13310.1
Length=1529
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488149 jgi|Araly1|488149|fgenesh2_kg.6__1283__AT5G13310.1 2036 0.0
> Ahg488149 jgi|Araly1|488149|fgenesh2_kg.6__1283__AT5G13310.1
Length=1487
Score = 2036 bits (1102), Expect = 0.0
Identities = 1368/1495 (92%), Gaps = 24/1495 (2%)
Strand=Plus/Plus
Query 23 TCACAGCAATCGATTTGTGTGTGTTTCAATTTCTAATAG-----CTTCACAATGGCATCG 77
||||| |||||||||||||||||||||||||||| || | |||| ||||||| |||
Sbjct 1 TCACACCAATCGATTTGTGTGTGTTTCAATTTCTTATTGCTTCCCTTCCCAATGGCGTCG 60
Query 78 TCTGGATCAGCCGACGAAGATTTCCAGTCTCGCGTTGCGAAGATCTTCGGATCTCTACCC 137
|||||||| |||||||| ||||||||||||||||||||||||||||| || ||||| |||
Sbjct 61 TCTGGATCGGCCGACGATGATTTCCAGTCTCGCGTTGCGAAGATCTTTGGGTCTCTCCCC 120
Query 138 TTCTCTCGTCCTTCGTCTTCCAAGTTTTCCACGTCGTCTTCTGCTCCGGCGTCGCGGCAG 197
||||||||||||||||||||||||||||| | | |||||| ||||||||||||||||
Sbjct 121 TTCTCTCGTCCTTCGTCTTCCAAGTTTTCTA---CATCTTCTACTCCGGCGTCGCGGCAA 177
Query 198 CAATCGGGGTCGGTGTGGACTCTCTCCGACACAGAGGTAGAGAAGCGGGAGTGGAAGCGA 257
||||||||||||||||||||||||||||| ||| | |||||||||||||| |||||||||
Sbjct 178 CAATCGGGGTCGGTGTGGACTCTCTCCGATACACAAGTAGAGAAGCGGGAATGGAAGCGA 237
Query 258 GATTCGTACGATAGAGACGAGATTCCTTGTGCTTCATCCTTTGACGAGCTCTTAAAACAG 317
||||||||||||||||||||||||||||||| |||||| || || ||||| || | |||
Sbjct 238 GATTCGTACGATAGAGACGAGATTCCTTGTGTTTCATCGTTCGATGAGCTGTTGAGACAA 297
Query 318 CAGAAGCCTTCCGAGGATGATCTCAAAGATATTGATTGCGGCGAGGATTTTGATGGTGTG 377
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 298 CAGAAGCCTTTAGAGGATGATCTCAAAGATATCGATTGCGGCGAGGATTTTGATGGTGAG 357
Query 378 TGGAGTATCAGAGCCTCCATGGGCCTTGATCGCACTCTCGATGACGAGGCAGAGGAAGAT 437
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 358 TGGAGTATCAGAGCCTCCATGGGACTTGACCGCACTCTCGATGACGAGGCAGAGGAAGAT 417
Query 438 GAGTATGATAAAGTTGCACTAGGGGAAGAGAATGACGGTGAAGGCTGTGGGC-GGAT-TC 495
|||||||||||||| ||||||||||||| ||||||||||||||| || ||| | | ||
Sbjct 418 GAGTATGATAAAGTCGCACTAGGGGAAGTGAATGACGGTGAAGG-TGAAGGCTTG-TCTC 475
Query 496 GGGATCCTCGTGCTAACTATGTTGCTGCAAGAATTAGGCTGAAGGAAGATGAAATTGAGG 555
||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| ||||
Sbjct 476 GGGATCCTCGTGCTAACTATGTTGCTGCAAGAATTAGGCTGAACGAAGACGCAATCGAGG 535
Query 556 CTAACAAGTTTAATACTTCTGCAAGTCAACCTTCGGAAAGCAAAGAGCCACACGCAGAAG 615
| ||||| |||||||||||||| ||||||||| || ||||||||||||||||| ||||||
Sbjct 536 CCAACAAATTTAATACTTCTGCCAGTCAACCTGCGAAAAGCAAAGAGCCACACACAGAAG 595
Query 616 AATCATCCGAAGCTATGCCGCGAAAACCTATACTCAAAAGGAAGGAGAATAGTTCAGATT 675
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 596 AATCATCCGAAGCCGTGCCGCGAAAACCTATACTAAAAAGGAAGGAGAATAGTTCAGATT 655
Query 676 CAGAAGCAAGGACAAGTAAGCGAGTCAGGTTTGATTCTGTGCCTGAAGAAACATTGAAGA 735
|||||| ||||||||||||||||||||||||||||| |||| |||||||||||| ||||
Sbjct 656 CAGAAGGAAGGACAAGTAAGCGAGTCAGGTTTGATTTTGTGTCTGAAGAAACATCAAAGA 715
Query 736 AGCCTGAAGATACTTGTTCAGCTTCTGCCTCGTCAAAAATCGTATCTCATCAGGGAAAAA 795
| |||||| |||| ||||||||||||||||| |||| || ||||| ||||||||| ||||
Sbjct 716 AACCTGAACATACATGTTCAGCTTCTGCCTCCTCAACAAGCGTATATCATCAGGGTAAAA 775
Query 796 GTGGTGCTCGGGTACCGGATTACTTGCTAAATCCTTCGAGTTACACCCGTTACAGCTTTG 855
|||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 776 GTGGTGCTCGGGTACCAGATTACTTGGTAAATCCTGCGAGTTACACCCGTTACAGCTTTG 835
Query 856 ATCCATCTTGTGAATTGGATGTGGAGTCCCCAACAGGAGAGTACATGGACACTCCCAATG 915
|||||||||| |||||| ||| | |||||||||||||||| ||||||||||||||||| |
Sbjct 836 ATCCATCTTGCGAATTGAATGAGAAGTCCCCAACAGGAGAATACATGGACACTCCCAAGG 895
Query 916 CTGTTGAAGGATTGAAAAA-TCCAGAGTCAGAATCATTTC-CAAAAGTCTCCTTTATTCC 973
||||||||||||| ||||| |||||||||||||||| ||| |||||||||| ||||||||
Sbjct 896 CTGTTGAAGGATT-AAAAACTCCAGAGTCAGAATCA-TTCTCAAAAGTCTCTTTTATTCC 953
Query 974 GCAGAATAAGACCAAGGACGTAAGTGAAGACAGTAGTAACTGTAATGAGACGAAGCCTAT 1033
||||| ||||||||||||||||| |||||||| |||||||||| ||||||||||||| |
Sbjct 954 ACAGAAGAAGACCAAGGACGTAAGAGAAGACAGCAGTAACTGTAGTGAGACGAAGCCTGT 1013
Query 1034 CGTAGCTGGAGAGTTGGCAGAAGAAGAGAGACCAAGTGCAACAGAAGATGGGGATACTGA 1093
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TGTAGCTGGAGAGTTGGCAGAAGAAGAGAGACCAAGTGCAACAGAAGATGGGGATACTGA 1073
Query 1094 AATACGAGAATCAGAGAGCTGCACCAGTTTCCAAAGCAAAGGTCGTCAATATCGTGCCAA 1153
| || ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 1074 AGTAGGAGAATCAGAGAGCTGCACCAGTTTCCAAAGGAAAGGTCGTCAATATCGCGCTAA 1133
Query 1154 GCTTAGTTTAGATGAAACAGATGTCTGATCTTTCACATACCAGTTTGGTTGGAAAACGCT 1213
|| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1134 GCAAAGTTTAGATGAAACAGCTGTCTGATCTTTCACATACCAGTT-GGTTGGAAAACGCT 1192
Query 1214 ACACAGAGATGAAGTTGGGGTCCATGAGATACAATCATGTAGCATCTTTTAGCCGCACAT 1273
|||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||
Sbjct 1193 ACACAGAGATGAAGTTGGGGTCCATGAGATACAAACATGTAGCATCTTTTAGCAGTACAT 1252
Query 1274 GTAAGATATTTTTAATTCCTAGACTTCTTTTTTACCCAATTTAGAGACTGTATTACAGCG 1333
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1253 GTAAGATATTTTTAATTCCTAGACCTCTTTTTTACCCAATTTAGAGACTATATTACAGCG 1312
Query 1334 AATGTATGGTAACATAGTAAGAAACTGTTTACCTT--T-GA-GA--CTGGTTGATAGTAC 1387
||||||||||||||||||||||||| ||||||||| | || || ||||||||||| ||
Sbjct 1313 AATGTATGGTAACATAGTAAGAAACAGTTTACCTTCCTCGAAGAGACTGGTTGATAGAAC 1372
Query 1388 ACGCAGAAGAGAATCTAAAGCTACCTCAACTTCCTGGAAGCTATCTTGATAGATT-CCAG 1446
||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct 1373 ACGCAGAAGAGAATCTAAAGCTACCTCAACTTCCTCGAAGCAATCTTGATAGATCACCAG 1432
Query 1447 TGATGTTGCCACAAGTTTTGATTCAACACTAGTGAATCGTTTCTGGGAAGATTCC 1501
||||||||||||||||| | |||||||||||||||||| || ||||||||||||
Sbjct 1433 AGATGTTGCCACAAGTTTGGTTTCAACACTAGTGAATCGCTTATGGGAAGATTCC 1487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57249638235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5