BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13320.1
Length=1976
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488150 jgi|Araly1|488150|fgenesh2_kg.6__1284__AT5G13320.1 3016 0.0
Ahg472573 jgi|Araly1|472573|fgenesh2_kg.1__2527__AT1G23160.1 261 1e-68
> Ahg488150 jgi|Araly1|488150|fgenesh2_kg.6__1284__AT5G13320.1
Length=1942
Score = 3016 bits (1633), Expect = 0.0
Identities = 1854/1958 (95%), Gaps = 25/1958 (1%)
Strand=Plus/Plus
Query 1 AATGCAATTTCAAAAATTTCCAAATCCTTTGTAATTAAATTGAGTGTACCAATCTGGAGA 60
|||||| ||||| |||||||||||||||||| | ||||||||||| |||||||||||
Sbjct 1 AATGCAGTTTCACAAATTTCCAAATCCTTTG----T-AATTGAGTGTATCAATCTGGAGA 55
Query 61 AAAGATACGAGACTCTGTTGCAGAGAACCAAATATGAAGCCAATCTTCGATATCAACGAA 120
|||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 56 GAAGAAACGAGACTCTATTGCAGAGAACCAAATATGAAGCCAATCTCCGATATCAACGAA 115
Query 121 ACTTTTGAGAAGCAGCTGAAGGATTTAACTTCAAATGTGAAGTC-TATACAAGACAACTT 179
| ||||||||||||||||||| ||||||||||| |||||||| | ||||||||||||||
Sbjct 116 AGTTTTGAGAAGCAGCTGAAGTATTTAACTTCAGATGTGAAG-CAAATACAAGACAACTT 174
Query 180 GTTAGAGGAGATCATCACACCCAACACCAAAACAGAGTACCTCCAACGTTTTCTCATCGA 239
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 GTTAGAGGAGATAATCACACCCAACACCAAAACAGAGTACCTCCAACGTTTTCTCATCGA 234
Query 240 TAGGTTCGACAAAGAGCTCTTCAAGAAAAACGTACCGATCGTGTCATATGAAGATATTAA 299
||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 235 TAGGTTCGATAAAGATCTCTTCAAGAAAAACGTACCGATCGTGACATATGAAGATATTAA 294
Query 300 GCCTTATCTCGACCGTGTCGTTAATGGAGAGTCATCCGATGTTATATCGGCCCGAACTAT 359
||||||||| || |||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 295 GCCTTATCTGGATCGTGTCGTTAATGGAGAGTCATCCGATGTTATATCGGCTCGACCTAT 354
Query 360 CACTGGATTCTTGCTAAGTTCTGGAACTTCTGGAGGAGCACAAAAGATGATGCCATGGAA 419
|| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 355 TACCGGTTTCTTGCTAAGTTCGGGAACTTCTGGGGGAGCACAAAAGATGATGCCATGGAA 414
Query 420 CAACAAGTACTTGGACAATTTGACATTCATCTACGATCTTCGTATGCAAGTTATAACCAA 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 415 CAACAAGTACTTGGACAATTTGACTTTCATCTACGATCTTCGTATGCAAGTTATAACCAA 474
Query 480 GCATGTGAAAGGTGTGGAAGAAGGAAAAGGGATGATGTTTCT-TTTCACTAAACAAGAAT 538
||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 475 GCATGTGGAAGGTGTGGAAGAAGGAAAAGGGATGATGTTTCTCTTT-ACTAAACAAGAAT 533
Query 539 CCATGACTCCTTCTGGCTTGCCTGCTCGAGTCGCAACCAGCAGCTATTTCAAGAGTGACT 598
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 534 CCATGACTCCTTCTGGCTTGCCTGCTCGAGTCGCAACCAGCAGCTATTTGAAGAGTGACT 593
Query 599 ATTTCAAGAACCGTCCATCGAACTGGTATTACTCGTACACCAGCCCTGATGAAGTCATCT 658
|||||||| |||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 594 ATTTCAAGCACCGGCCATCGAACTGGTACTACTCGTACACGAGCCCTGATGAAGTCATCT 653
Query 659 TATGCCCTAACAACACCGAAAGTCTATACTGCCATTTGCTCTGTGGCTTAGTCCAAAGAG 718
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 654 TATGCCCTAACAACACCCAAAGTCTGTACTGCCATTTGCTCTGTGGCTTAGTCCAAAGAG 713
Query 719 ACGAGGTTGTGAGGACGGGTTCCATCTTTGCTTCAGTCATGGTCCGAGCTATCGAGGTCC 778
| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 714 AAGAGGTTGTGAGAACGGGTTCCATCTTTGCTTCGGTCATGGTCCGAGCTATCGAGGTTC 773
Query 779 TTAAGAATTCTTGGGAGGAGTTGTGTTCAAACATCCGATCGGGCCATCTCAGTAACTGGG 838
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 774 TTAAGAATTCTTGGGTGGAGTTGTGTTCAAACATCCGATCGGGCCATCTCAGCAACTGGG 833
Query 839 TCACAGACTTGGGTTGTCAAAACTCTGTTTCTTTGGTTCTTGGAGGGCCACGTCCTGAAT 898
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 834 TCACAGACTTGGGTTGTCAAAGCTCTGTTTCTTTGGTCCTTGGAGGGCCACGTCCTGAAT 893
Query 899 TAGCAGACACTATTGAAGAAATATGCAACCAAAATTCTTGGAAAGGTATAGTCAAAAGAC 958
|||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 894 TAGCAGACACGATCGAAGAAATATGCAACCAAAAGTCTTGGAAAGGTATAGTCAAAAGA- 952
Query 959 TT-TGGCCAAACACCAAATATATCGAAACCGTTGTCACTGGTTCAATGGGACAGTACGTT 1017
|| |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 953 TTGTGGCCAAACACCAAATATATCGAAACTGTTGTTACCGGTTCAATGGGACAGTACGTT 1012
Query 1018 CCCATGTTGAACTACTATTGTAACGACTTGCCTCTCGTTTCAACAACTTACGGTTCTTCG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 CCCATGTTGAACTACTATTGTAACGACTTGCCTCTCGTTTCAACAACTTACGGTTCTTCG 1072
Query 1078 GAGACTACCTTTGGGATCAATCTAGATCCTCTGTGCAAACCTGAAGATGTTTCTTACACT 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 GAGACTACCTTTGGGATCAATCTAGATCCTCTGTGCAAACCTGAAGATGTTTCTTACACT 1132
Query 1138 TTCATGCCCAACATGTCTTACTTTGAGTTCATACCAATGGATGGAGGAGACAAGAACGAT 1197
|||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct 1133 TTCATGCCCAACATGTCTTACTTTGAGTTCATACCAATGGATGGAG-A--CAATAACGAT 1189
Query 1198 GTGGTTGACCTAGAAGATGTGAAACTTGGGTGCACTTATGAACCCGTTGTCACAAATTTC 1257
||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1190 GTGGTCGACCTTGAAGATGTGAAACTCGGGTGCACTTATGAACCCGTGGTCACAAATTTC 1249
Query 1258 GCTGGCTTGTATAGGATGAGAGTGGGAGATATTGTTTTGGTGACTGGTTTCTACAACAAC 1317
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1250 GCCGGCTTGTATAGGATGAGAGTGGGAGATATTGTACTGGTGACTGGTTTCTACAACAAC 1309
Query 1318 GCGCCTCAGTTTAAGTTTGTAAGAAGAGAAAACGTCGTCTTAAGCATCGATTCCGATAAA 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 GCGCCTCAGTTTAAGTTTGTAAGAAGAGAAAACGTCGTCTTAAGCATCGATTCCGATAAA 1369
Query 1378 ACTAACGAAGAAGATCTGTTTAAGGCTGTGAGTCAAGCGAAGCTCGTACTCGAGTCATCA 1437
|||||||||||||||||||||||||| ||||||||||||||||| || |||||||||| |
Sbjct 1370 ACTAACGAAGAAGATCTGTTTAAGGCGGTGAGTCAAGCGAAGCTGGTTCTCGAGTCATTA 1429
Query 1438 GGTCTCGATCTGAAAGACTTCACCAGTTATGCTGACACCTCAACATTTCCAGGTCACTAC 1497
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1430 GGTCTCGATCTGAAAGACTTCACCAGTTATGCTGACACCTCAACATTTCCCGGTCACTAC 1489
Query 1498 GTGGTTTACTTGGAAGTAGATACCAAAGAGGGAGAGGAGAAGGAGACGGCACAGTTTGAG 1557
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1490 GTGGTTTACTTGGAAGTAGATACCAAAGAGGGAGAGGAGAAGAAGACGTCACAGTTTGAG 1549
Query 1558 CTCGATGAAGAGGCACTCTCCACGTGTTGTTTGGTAATGGAGGAGTCGCTTGATAATGTT 1617
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1550 CTCGATGAAGAGGCACTCTCCATGTGTTGTTTGGTAATGGAGGAGTCGCTTGATAATGTT 1609
Query 1618 TACAAGAGATGTCGATTCAAAGACGGATCGATCGGGCCTCTCGAGATAAGAGTGGTGCGT 1677
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1610 TACAAGAGATGTCGATTCAAAGACGGATCGATCGGGCCTCTGGAGATAAGAGTGGTGCGT 1669
Query 1678 CAAGGAACGTTTGATT-CTCTCATGGACTTCTTCATCTCACAAGGTGCTTCCACCGGTCA 1736
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1670 CAAGGAACGTTT-ATTTCTCTCATGGACTTCTTCATCTCACAAGGTGCTTCCACTGGTCA 1728
Query 1737 ATACAAGACTCCTAGATGCATTAAGTCAGGGAAAGCCTTGCAAGTATTGGAGACATGTGT 1796
|||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1729 ATACAAGACTCCCAGATGCATTAAATCAGGGAAAGCCTTGCAAGTACTGGAGACATGTGT 1788
Query 1797 GGTAGCCAAATTCTTCAGTAT-TTGATTGTTCTTCCTTGGTTTTAT-ATAGGTTCAAGTG 1854
||||||||||||||||||| | |||||||||||||||| | || | |||||||||||
Sbjct 1789 GGTAGCCAAATTCTTCAGT-TCTTGATTGTTCTTCCTTCCCTGGATTACAGGTTCAAGTG 1847
Query 1855 ATTTGTCTTCtt-tttttttCCATAAA-GGGTTTGGTTCAA-TTGATTTGTTGTGATTTG 1911
|||||| || || ||||||| | |||| |||| |||||||| || ||||||||||||||
Sbjct 1848 ATTTGTTTT-TTGTTTTTTTGC-TAAAAGGGTATGGTTCAAGTT-ATTTGTTGTGATTTC 1904
Query 1912 AGAGTGTACTAATTTGTCTGAATGTTTGTTTATAtttt 1949
|| |||||||||||||||||||||||||||||||||||
Sbjct 1905 AGTGTGTACTAATTTGTCTGAATGTTTGTTTATATTTT 1942
> Ahg472573 jgi|Araly1|472573|fgenesh2_kg.1__2527__AT1G23160.1
Length=1431
Score = 261 bits (141), Expect = 1e-68
Identities = 328/412 (80%), Gaps = 37/412 (9%)
Strand=Plus/Plus
Query 356 CTATCACTGGATTCTTGCTAAGTTCTGGAACTTCTGGAGGAGCACAAAAGATGATGCCAT 415
|||| || || ||| | |||||||| |||||||| || ||||||||||||||||||||||
Sbjct 179 CTATAACCGGTTTCGTACTAAGTTCGGGAACTTCAGGGGGAGCACAAAAGATGATGCCAT 238
Query 416 GGAA-CAACAAGTACTTGGACAATTTGACATTCATCTACGATCTTCGTATGCAAGTTATA 474
|||| || || | | |||| | |||| | || |||||||| |||| | | |
Sbjct 239 GGAATGAA-AA--A--T-----ATTT-AGATTCTTGTATGATCTTCGGATGC-A--T-T- 282
Query 475 ACCAAGCATGTGAAAGGTGTGGAAG-AAGGAAAAGG-GATGATGTTTCT-TTTCACTAAA 531
| |||||||| ||||| || |||| ||||| |||||||||| | |||||||||
Sbjct 283 ----A--ATGTGAAAAATGTGG-AGAAAGG-AAAGGCGATGATGTTT-TACTTCACTAAA 333
Query 532 CAAGAATCCATGACTCCTTCTGGCTTGCCTGCTCGAGTCGCAACCAGCAGCTATTTCAAG 591
| |||||||| ||||| ||||||||||| ||||| ||||||| || |||||||| |||
Sbjct 334 CTCGAATCCATCACTCCCTCTGGCTTGCCCGCTCGCGTCGCAAGTAGTAGCTATTTAAAG 393
Query 592 AGTGACTATTTCAAGAACCGTCCATCGAACTGGTATTACTCGTACACCAGCCCTGATGAA 651
|| ||||||||||||||||||||||||||||||||||| |||||||||| || ||||||
Sbjct 394 AGCAACTATTTCAAGAACCGTCCATCGAACTGGTATTACACGTACACCAGTCCAGATGAA 453
Query 652 GTCA-TCTTATGCCCTA-ACAACAC-CGAAAGTCTATACTGCCATTTGCTCTGTGG-CTT 707
||| ||| ||| || | |||||| | ||| ||| |||||||||||||| ||||| ||
Sbjct 454 CTCACTCT-ATGTCC-AGACAACAAACAAAA-TCTCTACTGCCATTTGCTTTGTGGTCT- 509
Query 708 AGTCCAAAGAGACGAGGTTGTGAGGACGGGTTCCATCTTTGCTTCAGTCATG 759
||| |||||| |||||||| || | |||||||||||| || |||||||||
Sbjct 510 AGTTCAAAGAAACGAGGTTACAAGAATGGGTTCCATCTTCGCCTCAGTCATG 561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74275977750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5