BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13330.1
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488151 jgi|Araly1|488151|fgenesh2_kg.6__1285__AT5G13330.1 1500 0.0
> Ahg488151 jgi|Araly1|488151|fgenesh2_kg.6__1285__AT5G13330.1
Length=1135
Score = 1500 bits (812), Expect = 0.0
Identities = 1009/1102 (92%), Gaps = 21/1102 (2%)
Strand=Plus/Plus
Query 52 TTGTTGTTCATCACCAAGCCAAGCTCCATGTCCTAGTCACTCCACAGATTCCCTATCATC 111
|||||||||||||||||||||||||||||| |||||||||||| |||| |||| | ||
Sbjct 40 TTGTTGTTCATCACCAAGCCAAGCTCCATGGCCTAGTCACTCCGCAGAATCCC--T-GTC 96
Query 112 ATCAATTCGTTTCAAACTTAGTTCCTTTCAAAGTCTTGTACATATATACACACACAC-C- 169
|||||||| ||||||||||||||||||| || ||||||||||||||| | |||||| |
Sbjct 97 ATCAATTC-ATTCAAACTTAGTTCCTTTCGAATTCTTGTACATATATATATACACACTCG 155
Query 170 TATTATTCTCTTGGTGTGTTTGTGTGTTACATATACGTGTGAGTACATACTTTGTTGTAA 229
| || |||||| ||||||| |||||||||||||| ||||||| ||| | ||||||||||
Sbjct 156 TGTTGTTCTCTCGGTGTGTGTGTGTGTTACATATCCGTGTGAATAC--AGTTTGTTGTAA 213
Query 230 AAGTGGATCGGAGGTATGGAAAGGGACCGGTTCCACCGGAAACATCGGCGGCGGCGGATG 289
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 214 AAGTGGATCGGAGGTATGGAAAGGGACCGGTTCCACAGGAAACATCGGCGGCGGCGGATG 273
Query 290 ATAATTCGTCTTGGAACGAGACTGATGTCACCGCCATGGTCTCCGCTCTCAGCCGTGTCA 349
| ||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 274 AGAATCCATCTTGGAACGAGACTGATGTCAACGCCATGGTCTCCGCTCTCAGCCGTGTCA 333
Query 350 TAGAGAATCCGACAGACCCGCCGGTCAAACAAGAGCTTGATAAATCGGATCAACATCAAC 409
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 334 TCGAGAATCCGACAGACCCGCCGGTCAAACAAGAGCTTGATAAATCGGATCAACTTCAAC 393
Query 410 CAGACCAAGATCAACCAAGAAGAAGACACTATAGAGGCGTAAGGCAGAGACCATGGGGTA 469
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 394 AAGACCAAGATCAACCAAGAAGAAGACACTATAGAGGCGTAAGGCAGCGACCATGGGGCA 453
Query 470 AATGGGCGGCAGAAATCCGCGATCCAAAGAAAGCAGCCCGTGTCTGGCTCGGGACTTTCG 529
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 454 AATGGGCGGCTGAAATCCGTGATCCAAAGAAAGCAGCCCGTGTCTGGCTCGGGACTTTCG 513
Query 530 AGACGGCAGAGGAAGCTGCTTTAGCCTATGACCGAGCTGCCCTCAAATTCAAAGGCACCA 589
|||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 514 AGACAGCAGAGGAAGCTGCTTTAGCCTACGACCGAGCCGCCCTCAAATTCAAAGGTACCA 573
Query 590 AGGCTAAACTGAACTTCCCTGAACGGGTCCAAGGCCCTACTACCACCACAACCATTTCTC 649
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 574 AGGCTAAACTAAACTTCCCTGAACGGGTCCAAGGCCCTACTACCACGACAACCATTGATC 633
Query 650 ATGCACCAAGAGGAGTTAGTGAATCCATGAACTCACCTCCTCCTCGACCTGGTCCACC-T 708
||||| ||||| ||||||||||||| |||||||| |||||| ||| ||||||||||| |
Sbjct 634 ATGCATCAAGAAGAGTTAGTGAATCAATGAACTCGCCTCCTATTCGGCCTGGTCCACCTT 693
Query 709 -T-C-A--ACTACTACTACTTCGTGGCCAATGACTTATAACCAGGACATACTTCAATACG 763
| | | |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 694 CTACTACTACTACTACTACTTCGTGGCCAATGACGTATAACCAGGACATACTTCAATACG 753
Query 764 CTCAGTTGCTTACGAGTAACAATGAGGTTGATTTATCATACTACACGTCGACTCTCTTCA 823
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 754 CTCAGTTGCTTACGAGTAACAATGAGGTTGATTTATCGTACTACACGTCGAGTCTCTTCA 813
Query 824 GTCAACCTTTTTCAACGCCTTCTTCATCTTCTTCTTCCTCCcaacagacgcagcaacagc 883
|||| ||||| || || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 814 GTCAGCCTTTCTCTACTCCTTCTTCATCTTCTTCTTCCTCCCAACAGACGCAGCAGCAGC 873
Query 884 agctacaacaacaacaacagcagcGTGAAGAAGAAGAGAAGAATTATGGTTACAATTATT 943
| | |||||||||||| || |||||||||||||||||||||| ||||||||| ||||||
Sbjct 874 AACAACAACAACAACAGCAACAGCGTGAAGAAGAAGAGAAGAGCTATGGTTACCATTATT 933
Query 944 ATAACTACCCAAGAGAATAATCTAATTATTATTGTTGGTCGAATCAGTTTTATAAATAGC 1003
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 934 ATAACCACCCAAGAGAATAATCTAATTATTATTGTCGGTCGAATCAGTTTTATAAATCGC 993
Query 1004 TATCATA---GTTTCATTTTTGGTTTCCGTAACCTTTGTTGCATGGAAAATATGAATGAA 1060
|| ||| |||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 994 TACCATTTTCGTTTCATTTTTGGTTTCCGTAACCGTTGTTGCATGGGAAATATGAATGAA 1053
Query 1061 CGAGGGACATGTGTAACAATTTGTTTGTGTTTCGTAAATGTTAGTTGTATTTGGATTTGC 1120
|||| || ||||||||||||||||| |||||||||| |||||||| ||||||||||||
Sbjct 1054 CGAGACACGTGTGTAACAATTTGTTTTTGTTTCGTAATTGTTAGTTAAATTTGGATTTGC 1113
Query 1121 -TG-A-A-GTTTGATTTTCTGA 1138
|| | | ||||||||||||||
Sbjct 1114 ATGCAGAAGTTTGATTTTCTGA 1135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43345756629
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5