BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13340.1
Length=778
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488152 jgi|Araly1|488152|fgenesh2_kg.6__1286__AT5G13340.1 1266 0.0
> Ahg488152 jgi|Araly1|488152|fgenesh2_kg.6__1286__AT5G13340.1
Length=769
Score = 1266 bits (685), Expect = 0.0
Identities = 742/770 (96%), Gaps = 2/770 (0%)
Strand=Plus/Plus
Query 10 AGAAATCAATTTGA-CCAATCAAATAATTGCGGTGGTGAAAATGGCTCGAAACGACTCGC 68
||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAATCAA-TTGACCCAATCAAATCATTGCGGTGGTGAAAATGGCTCGAAACGACTCGC 59
Query 69 GATCTAGGTCGCCGTCTCACCGCCGACGGTACTCTCGCTCGCCTGTGACTCATCGTAGCA 128
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 60 GATCTAGGTCGCCGTCTCACCGCCGACGATACTCTCGCTCGCCTGTTACTCATCGTAGCA 119
Query 129 GCCGTCGTACCAGGCGCGACCGCAGCCGCTCACCCTACACATCAAGGCATAAGAAGAGCA 188
||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 120 GCCGTCGTAGCAGGCGTGACCGCAGCCGCTCACCCTACACATCAAGGCACAAGAAGAGCA 179
Query 189 GATCTCCTGCACCAAGGCAACACCAAAGGGATAGAAGTAGTTCATTGTCTCCTTCCGAGC 248
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GATCTCCTACACCGAGGCAACACCAAAGGGATAGAAGTAGTTCATTGTCTCCTTCCGAGC 239
Query 249 ATAGAATTGCGATTGAAGTGAAGAAAGAACAGGAAGACAAGGCAAGATTGCAGCATGAGG 308
||| |||||||||||||| || |||||||||||||||||||||||| ||||||||||||
Sbjct 240 ATAAAATTGCGATTGAAGCAAAAAAAGAACAGGAAGACAAGGCAAGACTGCAGCATGAGG 299
Query 309 CGGAGCTCAAGCGACTAGAAGAAGAGACTGCACAGCGGATTGAGGAAGCAGTAAGGAAAA 368
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTGAGCTCAAACGACTAGAAGAAGAGACTGCACAGCGGATTGAGGAAGCAGTAAGGAAAA 359
Query 369 ATGTAGAGGAAAGGATGAAAACCGAAGAAGTTAAAGAAGAAATTGAAAGACGGACAAAGG 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATGTAGAGGAAAGGATGAAAACCGAAGAAGTTAAAGAAGAAATTGAAAGACGGACAAAGG 419
Query 429 AAGCTTATGAGAAGATGTTTCTTGACGTGGAAATACAGCTgaagaaagaaaaagaagctg 488
|||| ||||| |||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 420 AAGCCTATGAAAAGATGTTTCTTGATGTGGAAATACAGCTGAAGAAAGAAAAGGAAGCTG 479
Query 489 ctctaaacgaggcaagaagaaaagaagaacaagctaggagagaaagagaagagctggata 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTCTAAACGAGGCAAGAAGAAAAGAAGAACAAGCTAGGAGAGAAAGAGAAGAGCTGGATA 539
Query 549 agatgttagaagaaaaTAGTAGGAGGGTTGAAGAATCTCAAAGGCGAGAAGCAATGGAAC 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGATGTTAGAAGAAAATAGTAGGAGGGTTGAAGAATCTCAAAGGCGAGAAGCAATGGAAC 599
Query 609 TTCAACGTAAAGAAGAGGAAAGGTATCGAGAATTGGAGCTCCTGCagagacagaaggagg 668
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 600 TTCAACGTAAAGAAGAGGAAAGATATAGAGAATTGGAGCTCCTGCAGAGACAGAAGGAGG 659
Query 669 aggctgcaaggagaaagaagctggaagaagaagaagagattagaaACTCCAGCAAGCTAT 728
| |||||||||||||| || |||||||||||||||||||||||||||||||||||| |||
Sbjct 660 AAGCTGCAAGGAGAAAAAAACTGGAAGAAGAAGAAGAGATTAGAAACTCCAGCAAGTTAT 719
Query 729 CAAATGGAAACAGATCACGATCCAAGCTGCATTTCGGCATGGGTTTATAA 778
| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CGAATGGAAACAGATCACGATCCAAGCTGCATTTCGGCATGGGTTTATAA 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28706556501
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5