BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G13340.1 Length=778 Score E Sequences producing significant alignments: (Bits) Value Ahg488152 jgi|Araly1|488152|fgenesh2_kg.6__1286__AT5G13340.1 1266 0.0 > Ahg488152 jgi|Araly1|488152|fgenesh2_kg.6__1286__AT5G13340.1 Length=769 Score = 1266 bits (685), Expect = 0.0 Identities = 742/770 (96%), Gaps = 2/770 (0%) Strand=Plus/Plus Query 10 AGAAATCAATTTGA-CCAATCAAATAATTGCGGTGGTGAAAATGGCTCGAAACGACTCGC 68 ||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1 AGAAATCAA-TTGACCCAATCAAATCATTGCGGTGGTGAAAATGGCTCGAAACGACTCGC 59 Query 69 GATCTAGGTCGCCGTCTCACCGCCGACGGTACTCTCGCTCGCCTGTGACTCATCGTAGCA 128 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 60 GATCTAGGTCGCCGTCTCACCGCCGACGATACTCTCGCTCGCCTGTTACTCATCGTAGCA 119 Query 129 GCCGTCGTACCAGGCGCGACCGCAGCCGCTCACCCTACACATCAAGGCATAAGAAGAGCA 188 ||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 120 GCCGTCGTAGCAGGCGTGACCGCAGCCGCTCACCCTACACATCAAGGCACAAGAAGAGCA 179 Query 189 GATCTCCTGCACCAAGGCAACACCAAAGGGATAGAAGTAGTTCATTGTCTCCTTCCGAGC 248 |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 GATCTCCTACACCGAGGCAACACCAAAGGGATAGAAGTAGTTCATTGTCTCCTTCCGAGC 239 Query 249 ATAGAATTGCGATTGAAGTGAAGAAAGAACAGGAAGACAAGGCAAGATTGCAGCATGAGG 308 ||| |||||||||||||| || |||||||||||||||||||||||| |||||||||||| Sbjct 240 ATAAAATTGCGATTGAAGCAAAAAAAGAACAGGAAGACAAGGCAAGACTGCAGCATGAGG 299 Query 309 CGGAGCTCAAGCGACTAGAAGAAGAGACTGCACAGCGGATTGAGGAAGCAGTAAGGAAAA 368 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 CTGAGCTCAAACGACTAGAAGAAGAGACTGCACAGCGGATTGAGGAAGCAGTAAGGAAAA 359 Query 369 ATGTAGAGGAAAGGATGAAAACCGAAGAAGTTAAAGAAGAAATTGAAAGACGGACAAAGG 428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 ATGTAGAGGAAAGGATGAAAACCGAAGAAGTTAAAGAAGAAATTGAAAGACGGACAAAGG 419 Query 429 AAGCTTATGAGAAGATGTTTCTTGACGTGGAAATACAGCTgaagaaagaaaaagaagctg 488 |||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 420 AAGCCTATGAAAAGATGTTTCTTGATGTGGAAATACAGCTGAAGAAAGAAAAGGAAGCTG 479 Query 489 ctctaaacgaggcaagaagaaaagaagaacaagctaggagagaaagagaagagctggata 548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 CTCTAAACGAGGCAAGAAGAAAAGAAGAACAAGCTAGGAGAGAAAGAGAAGAGCTGGATA 539 Query 549 agatgttagaagaaaaTAGTAGGAGGGTTGAAGAATCTCAAAGGCGAGAAGCAATGGAAC 608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 AGATGTTAGAAGAAAATAGTAGGAGGGTTGAAGAATCTCAAAGGCGAGAAGCAATGGAAC 599 Query 609 TTCAACGTAAAGAAGAGGAAAGGTATCGAGAATTGGAGCTCCTGCagagacagaaggagg 668 |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 600 TTCAACGTAAAGAAGAGGAAAGATATAGAGAATTGGAGCTCCTGCAGAGACAGAAGGAGG 659 Query 669 aggctgcaaggagaaagaagctggaagaagaagaagagattagaaACTCCAGCAAGCTAT 728 | |||||||||||||| || |||||||||||||||||||||||||||||||||||| ||| Sbjct 660 AAGCTGCAAGGAGAAAAAAACTGGAAGAAGAAGAAGAGATTAGAAACTCCAGCAAGTTAT 719 Query 729 CAAATGGAAACAGATCACGATCCAAGCTGCATTTCGGCATGGGTTTATAA 778 | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 CGAATGGAAACAGATCACGATCCAAGCTGCATTTCGGCATGGGTTTATAA 769 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28706556501 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5