BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13400.1
Length=2185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488159 jgi|Araly1|488159|fgenesh2_kg.6__1293__AT5G13400.1 3408 0.0
> Ahg488159 jgi|Araly1|488159|fgenesh2_kg.6__1293__AT5G13400.1
Length=2147
Score = 3408 bits (1845), Expect = 0.0
Identities = 2021/2107 (96%), Gaps = 7/2107 (0%)
Strand=Plus/Plus
Query 83 GCTGTTTTTGGTCACTCTGATGCTTTCAG-TTTCCATGGTTTTATGAGAAAATATCATTG 141
|||||||||| ||||| | | |||||| | ||||||||||||||||||| ||||||| |
Sbjct 44 GCTGTTTTTGTTCACTGTAAAGCTTTC-GATTTCCATGGTTTTATGAGATAATATCA-AG 101
Query 142 ATTATGGTTGCTTCTGAGATTAAATCCCCGGTGAGTGTCCCCGAGACTCCGGGAAGCTCC 201
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 102 ATTATGGTTGCTTCTGAGATTAAATCCCCTGTGAGTGTCCCCGAGACGCCGGGAAGCTCC 161
Query 202 TCTGTGCATCATAGGAAGCAGTTGAGTGTGTTCTTCATAGAATCAGATAACAGACGTCTT 261
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 162 TCTGTGCATCATAGGAAGCAGTTGAGTGTGTTCTTCATAGAGTCAGATAACAGACGTCTT 221
Query 262 GCTCTTGGCCGTGGCTATACCGGAGGAACCACTCCCGTTAACATCCATGGCAAACCCATC 321
||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 222 GCTCTTGGCCGCGGCTATACAGGAGGAACCACTCCGGTTAACATCCATGGCAAACCCATC 281
Query 322 GCCAATCTTTCCAAAACCGGTGGTTGGATCGCAGCTTTCTTCATTTTTGGAAATGAAATG 381
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 282 GCCAATCTTTCCAAAACCGGTGGTTGGATCGCAGCTCTCTTCATTTTTGGAAATGAAATG 341
Query 382 GCAGAGAGAATGGCGTATTTCGGACTCTCGGTGAACATGGTGGCGTTCATGTTCTACGTA 441
|| ||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 342 GCCGAGAGAATGGCGTATTTCGGACTATCCGTGAACATGGTGGCGTTCATGTTCTATGTA 401
Query 442 ATGCATAGGCCTTTTGAAAGTTCATCAAACGCAGTCAACAACTTCCTTGGCATCTCTCAA 501
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 402 ATGCATAGGCCTTTTGAGAGCTCATCAAACGCAGTCAACAACTTCCTTGGCATCTCTCAA 461
Query 502 GCCTCCTCTGTTCTTGGAGGCTTCTTAGCCGACGCTTACTTGGGTCGATACTGGACTATT 561
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 GCCTCCTCTGTTTTTGGAGGCTTCTTAGCCGACGCTTACTTGGGTCGATACTGGACTATT 521
Query 562 GCCATCTTCACTACCATGTATCTTGTCG---GTTTGATAGGAATAACATTGGGGGCAAGT 618
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||
Sbjct 522 GCCATCTTCACTACCATGTATCTTGTCGTAAGTTTGATAGGAATAACACTGGGGGCTAGT 581
Query 619 TTGAAGATGTTCGTACCAGACCAGAGCAACTGTGGCCAGTTATCATTGCTCTTAGGAAAT 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 TTGAAGATGTTCGTACCAGACCAGAGCAACTGTGGCCAGTTATCATTGCTCTTAGGAAAT 641
Query 679 TGTGAAGAAGCCAAATCTTGGCAAATGCTTTATCTCTACACGGTTCTCTACATAACCGGA 738
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 TGTGAACCAGCCAAATCTTGGCAAATGCTTTATCTCTACACGGTTCTCTACATAACCGGA 701
Query 739 TTCGGAGCTGCTGGTATAAGGCCATGTGTTTCCTCATTTGGTGCTGACCAGTTTGATGAG 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 TTCGGAGCTGCTGGTATAAGGCCATGTGTTTCCTCATTTGGTGCTGACCAGTTTGATGAG 761
Query 799 AAGAGCAAAGACTACAAGACACATTTAGACCGTTTCTTCAACTTCTTCTATCTATCGGTC 858
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 762 AAGAGCAAAGACTATAAGACACATTTAGACCGTTTCTTCAACTTCTTCTATTTATCTGTC 821
Query 859 ACTTTAGGCGCAATCATTGCCTTCACTTTGGTGGTATATGTTCAAATGGAACTTGGTTGG 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 ACTTTAGGCGCAATCATTGCCTTCACTTTGGTGGTATATGTTCAAATGGAACTTGGTTGG 881
Query 919 GGTATGGCTTTTGGCACATTGGCCGTAGCCATGGGGATTTCTAATGCTTTGTTCTTTGCT 978
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 882 GGTATGGCTTTTGGCACATTGGCCGTAGCTATGGGGATTTCTAATGCTTTGTTCTTTGCT 941
Query 979 GGTACACCGCTTTATCGGCATAGGTTGCCTGGTGGTAGTCCCTTGACTAGGGTAGCTCAG 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 GGTACACCGCTTTATCGGCATAGGTTGCCTGGTGGTAGTCCCTTGACTAGGGTAGCTCAG 1001
Query 1039 GTCTTAGTTGCCGCTTTCCGCAAACGAAATGCAGCTTTCACAAGCAGTGAGTTCATCGGT 1098
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 1002 GTCTTAGTTGCCGCTTTCCGCAAACGAAATGCAGCTTTTACTAGCAGTGAATTCATCGGT 1061
Query 1099 CTTTACGAAGTTCCTGGCTTGAAATCTGCTATTAATGGCAGTCGTAAAATCCCTCATTCC 1158
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 CTTTACGAAGTTCCGGGCTTGAAATCTGCTATTAATGGCAGTCGTAAAATCCCTCATTCC 1121
Query 1159 AATGATTTCATATGGCTAGACAAGGCGGCACTTGAGTTGAAAGAAGATGGATTGGAACCA 1218
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1122 GATGATTTCATATGGCTAGACAAGGCGGCACTTCAGTTGAAAGAAGATGGATTGGAGCCA 1181
Query 1219 TCTCCATGGAAGCTATGCACAGTAACACAAGTAGAGGAAGTGAAGATTCTGATCAGATTG 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1182 TCTCCATGGAAGCTATGCACAGTAACACAAGTAGAGGAAGTGAAGATTCTGATCAGACTG 1241
Query 1279 ATTCCAATCCCAACATGCACTATAATGCTGAGTCTGGTCTTGACTGAGTATCTTACACTC 1338
|||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1242 ATTCCAATCCCAGCATGCACTATAATGCTGAGTCTGGTCCTGACAGAGTATCTTACACTC 1301
Query 1339 TCAGTGCAACAAGCTTACACACTCAACACACACATTCAACACCTCAAGCTTCCAGTGACC 1398
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 TCAGTGCAACAAGCTTACACACTCAACACACACATTCAACACCTCAAGCTTCCAGTGACG 1361
Query 1399 TGCATGCCAGTTTTCCCAGGCCTAAGCATTTTCCTCATTCTCTCCCTTTATTACTCTGTC 1458
||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1362 TGCATGCCAGTCTTCCCAGGCCTCAGCATTTTCCTCATACTCTCCCTTTATTACTCTGTC 1421
Query 1459 TTCGTCCCTATCACCAGAAGAATCACTGGCAATCCTCATGGTGCTTCCCAGCTTCAAAGA 1518
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1422 TTCGTCCCTATCACCAGAAGAATCACTGGCAATCCCCATGGTGCTTCCCAGCTTCAAAGA 1481
Query 1519 GTGGGCATAGGGCTAGCAGTTTCAATCATATCAGTAGCTTGGGCTGGGCTATTCGAGAAC 1578
|||||||||||| |||| |||||||||||||||||||||||||| || ||||| ||||||
Sbjct 1482 GTGGGCATAGGGTTAGCTGTTTCAATCATATCAGTAGCTTGGGCCGGACTATTTGAGAAC 1541
Query 1579 TACAGGAGACATTACGCGATACAAAATGGTTTTGAGTTCAACTTCTTGACCCAAATGCCT 1638
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1542 TACAGGAGACATTACGCGATACAACATGGTTTTGAGTTCAACTTCTTGACCCAAATGCCT 1601
Query 1639 GATCTAACCGCGTACTGGTTGTTAATCCAGTACTGTCTCATCGGAATCGCAGAGGTTTTC 1698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1602 GATCTAACCGCGTACTGGTTGTTAATCCAGTACTGTCTCATCGGAATCGCAGAGGTTTTC 1661
Query 1699 TGCATAGTAGGGCTATTGGAGTTCCTTTACGAGGAAGCTCCGGATGCTATGAAGAGTATT 1758
||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1662 TGCATCGTAGGGCTATTGGAGTTCCTATACGAGGAAGCTCCTGATGCTATGAAGAGTATT 1721
Query 1759 GGTTCGGCTTACGCTGCTCTAGCCGGCGGGTTAGGGTGTTTTGCTGCCACCATTTTGAAC 1818
|||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1722 GGTTCGGCTTACGCTGCTTTAGCCGGCGGGCTAGGATGTTTTGCTGCCACCATTTTGAAC 1781
Query 1819 AATATTGTCAAGGCTGCGACTCGGGACTCAGATGGGAAATCGTGGTTATCGCAGAACATA 1878
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1782 AATATTGTCAAGGCTGCGACTCGGGACTCAGATGGGAAATCGTGGTTGTCGCAGAACATA 1841
Query 1879 AACACGGGGAGATTCGACTGCTTGTACTGGTTGCTCACACTTCTGAGCTTTTTGAATTTC 1938
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1842 AACACGGGGAGATTCGACTGTTTGTACTGGTTGCTCACACTTCTGAGCTTTTTGAATTTC 1901
Query 1939 TGTGTGTTCCTTTGGTCAGCGCATAGGTACAAGTACCGAGCTATCGAGTCTGAGGAAGAC 1998
|||| ||||||||||||||| ||||||||||||||| | ||||| |||||||||||||||
Sbjct 1902 TGTGCGTTCCTTTGGTCAGCTCATAGGTACAAGTACAGGGCTATTGAGTCTGAGGAAGAC 1961
Query 1999 AAGAGTAGTGCTGTTCTTTAAAGACACCACTTCTGTGTTCTCTTCTCGTTATTCTTTTTG 2058
|||||||| ||||||||||||| |||||||||||||||||||||||| |||| |||||||
Sbjct 1962 AAGAGTAGAGCTGTTCTTTAAATACACCACTTCTGTGTTCTCTTCTCATTATACTTTTTG 2021
Query 2059 ATAAAACAGCAGTAATTGTATCATCCTACTTTGCTTTCCTATAGCTAATGTTTAAGGGTG 2118
| |||| ||||||||||||||| |||| |||| |||||||||||||||||||||| |||
Sbjct 2022 AAAAAATAGCAGTAATTGTATCTTCCTGTTTTGTTTTCCTATAGCTAATGTTTAAGCGTG 2081
Query 2119 GAAAATCCGCTAAACGTGATTGTTCGTTTGTAAGAAGACCAATAAAATTAAGTTGTTCAA 2178
|| |||||||| |||| |||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2082 GACAATCCGCTTAACGGGATTGTTCGTTTGTAAGAAGACCA-TAAAATTAAGTCCTTCAA 2140
Query 2179 ACGTCGT 2185
|||||||
Sbjct 2141 ACGTCGT 2147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82236838955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5