BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13420.1
Length=1705
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488161 jgi|Araly1|488161|fgenesh2_kg.6__1295__AT5G13420.1 2460 0.0
> Ahg488161 jgi|Araly1|488161|fgenesh2_kg.6__1295__AT5G13420.1
Length=1627
Score = 2460 bits (1332), Expect = 0.0
Identities = 1511/1592 (95%), Gaps = 33/1592 (2%)
Strand=Plus/Plus
Query 1 AAAACTTCACCAACCCCATTTTTAAGCCCCTTTCTTTGTTTTTATCCTCCGATCGATCAA 60
|||||| |||||||||||||||| |||||||||| ||||||||||||||| |||||||||
Sbjct 1 AAAACTCCACCAACCCCATTTTT-AGCCCCTTTC-TTGTTTTTATCCTCCCATCGATCAA 58
Query 61 ACCAAGAAAAAACACTTTCGTATTTC-CCTCGACGaaaaaaaTGGCAACCATTTCGAATC 119
||||||||||||| ||||| |||||| || |||||||| |||||||||||||||||||||
Sbjct 59 ACCAAGAAAAAACTCTTTCATATTTCACC-CGACGAAAGAAATGGCAACCATTTCGAATC 117
Query 120 TCGCTAATCTTCCCCGCGCCACCTGCGTCGACTCCAAATCTTCTTCCTCTTCCTCCGTCT 179
||||||||||||||||||||||||||||||||||||||||||| | || | |||||||
Sbjct 118 TCGCTAATCTTCCCCGCGCCACCTGCGTCGACTCCAAATCTTC-T--TC-T--TCCGTCT 171
Query 180 TACCTAGATCCTTCGTCAATTTCCGCGCTTTGAATGCAAAGCTTTCCTCTTCTCAGCTTT 239
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 172 TACCTAGATCCTTCGTTAATTTCCGCGGTTTGAATGCAAAGCTTTCCTCTTCTCAGCTTT 231
Query 240 CTCTTCGTTATAACCAACGATCAATACCTTCCCTCTCTGTGAGGTGTTCAGTGTCTGGTG 299
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 232 CTCTTCGTTATAACCAACGATCAAGACCTTCCCTCTCTGTGAGGTGTTCAGTGTCTGGTG 291
Query 300 GAAATGGAACTGCTGGAAAGAGAACGACTCTTCATGATCTATATGAGAAGGAAGGTCAGA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 GAAATGGAACTGCTGGAAAGAGAACGACTCTTCATGATCTATATGAGAAGGAAGGTCAGA 351
Query 360 GTCCTTGGTATGATAATCTTTGCCGTCCAGTCACAGATCTTCTCCCGTTGATTGCTCGTG 419
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 352 GTCCTTGGTATGATAATCTATGCCGTCCAGTCACAGATCTTCTCCCCTTGATTGCTCGTG 411
Query 420 GTGTTAGAGGTGTTACTAGCAACCCTGCGATCTTCCAAAAAGCCATTTCCACTTCAAATG 479
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 412 GTGTTAGAGGCGTTACTAGCAACCCTGCGATCTTCCAGAAAGCCATTTCCACTTCTAATG 471
Query 480 CTTATAATGATCAATTCAGGACACTTGTGGAATCGGGAAAGGACATTGAAAGTGCGTATT 539
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 472 CTTATAATGATCAGTTCAGGACACTTGTGGAATCAGGAAAGGACATTGAAAGTGCGTATT 531
Query 540 GGGAACTTGTGGTGAAGGATATTCAGGATGCCTGCAAACTTTTTGAGCCAATCTATGACC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GGGAACTTGTGGTGAAGGATATTCAGGATGCCTGCAAACTTTTTGAGCCAATCTATGACC 591
Query 600 AGACAGAAGGTGCGGATGGCTATGTCTCTGTTGAAGTTTCACCTAGGCTTGCTGATGATA 659
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 AAACAGAAGGTGCTGATGGCTATGTCTCTGTTGAAGTTTCACCTAGGCTTGCTGATGATA 651
Query 660 CCCAAGGAACTGTTGAAGCTGCTAAATATCTTAGCAAGGTTGTCAACCGTCGTAATGTCT 719
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 CCCAAGGGACTGTTGAAGCTGCTAAATATCTTAGCAAGGTTGTCAACCGTCGTAATGTCT 711
Query 720 ACATTAAGATTCCTGCTACTGCTCCATGCATTCCTTCCATCAGGGATGTCATTGCAGCTG 779
|||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 712 ACATTAAGATCCCGGCTACTGCTCCATGCATTCCTTCCATCAGGGATGTCATTGCATCTG 771
Query 780 GAATAAGTGTCAATGTCACGCTTATATTCTCAATCGCCAGATATGAAGCAGTGATCGATG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 GAATAAGTGTCAATGTCACGCTTATATTCTCAATCGCCAGATATGAAGCAGTGATCGATG 831
Query 840 CATATTTGGATGGCCTCGAGGCGTCTGGACTTGATGACCTCTCAAGAGTTACCAGTGTTG 899
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 CATATTTGGACGGCCTCGAGGCGTCTGGACTTGATGACCTCTCAAGAGTTACCAGTGTTG 891
Query 900 CTTCCTTCTTTGTCAGTCGGGTGGATACTCTCATGGACAAGATGCTTGAGCAAATTGGTA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 CTTCCTTCTTTGTCAGTCGGGTGGATACTCTCATGGACAAGATGCTTGAGCAAATTGGTA 951
Query 960 CCCCTGAAGCCTTAGATCTCCGTGGGAAGGCGGCTGTGGCTCAAGCTGCATTAGCATACA 1019
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 952 CCCCTGAAGCCCTAGATCTCCGTGGCAAGGCGGCTGTGGCTCAAGCTGCATTAGCATACA 1011
Query 1020 AGCTATACCAGCAGAAATTCTCTGGCCCAAGATGGGAAGCTCTGGTAAAGAAAGGTGCCA 1079
|||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1012 AGCTGTACCAGCAGAAATTCTCAGGCCCAAGATGGGAAGCTCTGGTTAAGAAAGGTGCCA 1071
Query 1080 AGAAACAGAGACTTCTCTGGGCATCAACAAGTGTAAAGAACCCAGCTTACTCTGACACCT 1139
|||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1072 AGAAGCAGAGGCTTCTCTGGGCATCGACAAGTGTTAAGAACCCAGCTTACTCTGACACCT 1131
Query 1140 TATATGTCGCTCCTCTCATCGGACCTGACACTGTATCAACCATGCCGGATCAAGCCCTGG 1199
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1132 TATATGTCGCTCCTCTCATCGGACCTGACACTGTTTCAACCATGCCGGATCAAGCCCTGG 1191
Query 1200 AAGCATTCGCAGATCATGGAATAGTGAAGAGGACAATAGATGCGAATGTGTCAGAAGCAG 1259
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1192 AAGCATTTGCAGATCATGGAATCGTGAAGAGGACAATAGATGCGAATGTGTCAGAAGCAG 1251
Query 1260 AAGGGATTTACAGTGCACTAGAGAAGCTGGGAATAGACTGGAACAAAGTAGGAGAACAGT 1319
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1252 AAGGGATATACAGTGCACTAGAGAAGCTGGGAATAGACTGGAACAAAGTAGGGGAACAGT 1311
Query 1320 TGGAAGACGAAGGAGTAGATTCCTTCAAGAAGAGTTTCGAGAGTCTGCTCGGTACACTGC 1379
|||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 1312 TGGAAGACGAAGGAGTAGATTCGTTCAAGAAGAGTTTCGAGAGCCTGCTAGGTACACTGC 1371
Query 1380 AAGACAAGGCCAACACTCTCAAACTAGCCAGCCATTGAGGAAATGAGTCATCATTATGTT 1439
||||||||||||||||||||||||||||||||||||||||| | ||| | |||||
Sbjct 1372 AAGACAAGGCCAACACTCTCAAACTAGCCAGCCATTGAGGA--T----CAT--T-ATGTT 1422
Query 1440 TTTGGT---TA--CGCTAAAATAAAAA--GAAGAACCTTTGGCTTTTGTTCTTCAATCCT 1492
|||||| || | |||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1423 TTTGGTGGGTAAACCCTAAAATAAAAAAAGAAGAACCTTTGGCTTTTGTTCTTCAACCCT 1482
Query 1493 TAT---GCATGCTTTCTAAAGTGGTTATGATGGATTTTGCTTGATGTTCCACATTATG-- 1547
||| | |||||||||||||| ||||| |||| ||||||||||||||||||||||||
Sbjct 1483 TATTATGTATGCTTTCTAAAGTTGTTATAATGGCTTTTGCTTGATGTTCCACATTATGAT 1542
Query 1548 GGTTATTCTATTTTCTTTGTTCTTGTAAGATG 1579
|| | | |||| ||||||||||||| ||||||
Sbjct 1543 GGGT-T-CTATCTTCTTTGTTCTTGCAAGATG 1572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63953521355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5