BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13430.1
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940809 jgi|Araly1|940809|scaffold_601353.1 1339 0.0
Ahg488163 jgi|Araly1|488163|fgenesh2_kg.6__1297__AT5G13440.1 1182 0.0
> Ahg940809 jgi|Araly1|940809|scaffold_601353.1
Length=862
Score = 1339 bits (725), Expect = 0.0
Identities = 813/856 (95%), Gaps = 3/856 (0%)
Strand=Plus/Plus
Query 92 TAGATTCACATTTGAGCTGAGAGATGCTGCGTGTAGCAGGGAGGAGGCTTTTCTCTGTCT 151
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 TAGATTCACA-TTGAGC--AGAGATGCTGCGTGTAGCAGGGAGGAGGCTTTTCTCTGTTT 57
Query 152 CGCAGAGATCTTCGACTGCGACCTCCTTCGTCGTCTCCCGTGACCATACCCTTTCCGATG 211
| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 58 CCCAGAGATCTTCGTCTGCGACCTCCTTCGTCGTCTCCCGTGACCATTCCCTTTCCGATG 117
Query 212 GTGGCGGCGACTCCTCTTCAGCTCCCAGATCCCTCCCCTCTGCAGATCTCTCATCTTACC 271
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 118 CCGGCGGCGACTCCTCTTCAGCTCCCAGATCCGTCCCCTCTGCAGATCTCTCATCTTACC 177
Query 272 ACCGTAGCCTTATCAGAGGCTTCTCTTCTCAAGTCCTTGCTCAAGGAAATGAGATAGGTT 331
|||| |||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct 178 ACCGGAGCCTTATTAGAGGTTTCGCTTCTCAAGTCCTTACTCAAGGAAATGAGATAGGTT 237
Query 332 TTGGTTCAGAAGTCCCAGCCACAGTCGAAGCTGTCAAAACGCCTAACTCAAAGATTGTCT 391
||| ||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 238 TTGCTTCGGAAGTCCCAGCCACTGTCGAAGCTGTCAAAACACCTAACTCAAAGATTGTCT 297
Query 392 ATGATGACCATAACCATGAGCGTTACCCACCTGGTGACCCTAGCAAGCGTGCATTCGCCT 451
|||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 298 ATGACGACCATAACCATGAGCGTTACCCGCCTGGTGACCCCAGCAAGCGTGCATTCGCCT 357
Query 452 ATTTTGTCTTGTCGGGTGGGAGGTTTGTTTATGCCTCTGTCCTCCGCCTGCTTGTTTTGA 511
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 358 ATTTTGTCTTGTCGGGTGGGAGGTTTGTTTATGCCTCTGTCATCCGCCTGCTTGTTTTGA 417
Query 512 AGCTTATTGTGAGCATGTCTGCAAGTAAAGATGTCCTTGCCCTTGCATCCCTTGAGGTTG 571
||||| ||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 418 AGCTTGTTGTGAGTATGTCCGCAAGTAAAGATGTCCTTGCTCTTGCATCCCTCGAGGTTG 477
Query 572 ACCTAGGGAGCATAGAACCAGGAACTACCGTGACAGTCAAGTGGCGTGGAAAGCCCGTCT 631
||||||||||||| |||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 478 ACCTAGGGAGCATTGAACCAGGAACTACTGTTACAGTCAAGTGGCGTGGAAAGCCAGTCT 537
Query 632 TCATCAGGCGAAGAACAGAAGATGACATCAAGCTGGCCAATAGTGTGGATGTTGGATCCC 691
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 538 TCATCAGGCGAAGAACAGAAGATGACATCAAGCTGGCCAATAGTGTGGATATCGGATCCC 597
Query 692 TGAGGGACCCACAAGAAGACTCGGTTAGGGTCAAGAATCCAGAATGGTTAGTGGTTGTTG 751
| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 598 TCAGGGACCCACAAGAAGACTCGGTTAGGGTCAAGAATCCAGAATGGTTAGTTGTGGTTG 657
Query 752 GAGTGTGCACTCATTTGGGGTGCATCCCCTTGCCTAATGCTGGTGATTATGGTGGTTGGT 811
|||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 658 GAGTGTGCACTCATCTGGGATGCATCCCCTTGCCTAATGCTGGTGATTATGGCGGTTGGT 717
Query 812 TTTGTCCGTGTCACGGATCACATTACGATATATCTGGAAGAATTAGGAAAGGTCCTGCAC 871
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 718 TTTGTCCGTGTCACGGATCACATTATGATATCTCTGGAAGAATTAGGAAAGGTCCTGCAC 777
Query 872 CATACAACCTGGAAGTACCAACCTACAGCTTCCTGGAAGAGAATAAGTTACTCATCGGTT 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 778 CATACAACCTGGAAGTACCAACCTACAGCTTCCTGGAAGAGAATAAGTTACTCATTGGTT 837
Query 932 GATTAATAAAAGCACA 947
||||||||||||||||
Sbjct 838 GATTAATAAAAGCACA 853
> Ahg488163 jgi|Araly1|488163|fgenesh2_kg.6__1297__AT5G13440.1
Length=1196
Score = 1182 bits (640), Expect = 0.0
Identities = 784/852 (92%), Gaps = 16/852 (2%)
Strand=Plus/Plus
Query 100 CATTTGAGCTGAGAGATGCTGCGTGTAGCAGGGAGGAGGCTTTTCTCTGTCTCGCAGAGA 159
||||||||| |||||||||||| |||||||| ||||||||||| ||||| |||||||||
Sbjct 121 CATTTGAGC--AGAGATGCTGCGAGTAGCAGGAAGGAGGCTTTTTTCTGTTTCGCAGAGA 178
Query 160 TCTTCGACTGCGACCTCCTTCGTCGTCTCCCGTGACCATACCCTTTCCGATGGTGGCGGC 219
|||||||| ||||||||||||||| | ||||||||||||||||||||||| ||||||
Sbjct 179 TCTTCGACGGCGACCTCCTTCGTCCTTTCCCGTGACCATACCCTTTCCGA---TGGCGGA 235
Query 220 GACTCCTCTTCAG-CTCCCAGATCCCTCCCCTCTGCAGA----TC-TC--TC-A-TCTTA 269
||||| |||| | || | ||||| ||||||||||||| || || || | |||||
Sbjct 236 AACTCCCCTTCCGCCT-CTAGATCTGTCCCCTCTGCAGATCTCTCATCTTTCAATTCTTA 294
Query 270 CCACCGTAGCCTTATCAGAGGCTTCTCTTCTCAAGTCCTTGCTCAAGGAAATGAGATAGG 329
|||||| |||||||| ||||| ||| |||||||||||||| |||||||||||||||||||
Sbjct 295 CCACCGCAGCCTTATTAGAGGGTTCGCTTCTCAAGTCCTTACTCAAGGAAATGAGATAGG 354
Query 330 TTTTGGTTCAGAAGTCCCAGCCACAGTCGAAGCTGTCAAAACGCCTAACTCAAAGATTGT 389
||||| ||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 355 TTTTGCTTCGGAAGTCCCAGCCACTGTCGAAGCTGTCAAAACACCTAACTCAAAGATTGT 414
Query 390 CTATGATGACCATAACCATGAGCGTTACCCACCTGGTGACCCTAGCAAGCGTGCATTCGC 449
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 415 CTATGACGACCATAACCATGAGCGTTACCCACCTGGTGACCCTAGCAAACGTGCATTTGC 474
Query 450 CTATTTTGTCTTGTCGGGTGGGAGGTTTGTTTATGCCTCTGTCCTCCGCCTGCTTGTTTT 509
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
Sbjct 475 CTATTTTGTCTTGTCGGGTGGGAGGTTTGTTTATGCCTCTGTTATCCGGCTGCTTGTTCT 534
Query 510 GAAGCTTATTGTGAGCATGTCTGCAAGTAAAGATGTCCTTGCCCTTGCATCCCTTGAGGT 569
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GAAGCTTGTTGTGAGTATGTCTGCAAGTAAAGATGTCCTTGCCCTTGCATCCCTTGAGGT 594
Query 570 TGACCTAGGGAGCATAGAACCAGGAACTACCGTGACAGTCAAGTGGCGTGGAAAGCCCGT 629
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 595 TGACCTAGGGAGCATCGAACCAGGAACTACCGTGACAGTCAAGTGGCGAGGAAAGCCAGT 654
Query 630 CTTCATCAGGCGAAGAACAGAAGATGACATCAAGCTGGCCAATAGTGTGGATGTTGGATC 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CTTCATCAGGCGAAGAACAGAAGATGACATCAAGCTGGCCAATAGTGTGGATGTTGGATC 714
Query 690 CCTGAGGGACCCACAAGAAGACTCGGTTAGGGTCAAGAATCCAGAATGGTTAGTGGTTGT 749
| |||||||||||||||||||||||||||| ||||||||||| ||||||||| | || ||
Sbjct 715 CTTGAGGGACCCACAAGAAGACTCGGTTAGAGTCAAGAATCCTGAATGGTTAATCGTGGT 774
Query 750 TGGAGTGTGCACTCATTTGGGGTGCATCCCCTTGCCTAATGCTGGTGATTATGGTGGTTG 809
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 775 TGGAGTATGCACTCATTTGGGGTGCATCCCCTTGCCTAATGCTGGTGATTATGGCGGTTG 834
Query 810 GTTTTGTCCGTGTCACGGATCACATTACGATATATCTGGAAGAATTAGGAAAGGTCCTGC 869
|||||||||||||||||| || ||||| ||||| || |||||||||||||||||||||||
Sbjct 835 GTTTTGTCCGTGTCACGGTTCGCATTATGATATCTCCGGAAGAATTAGGAAAGGTCCTGC 894
Query 870 ACCATACAACCTGGAAGTACCAACCTACAGCTTCCTGGAAGAGAATAAGTTACTCATCGG 929
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 895 ACCATACAACCTGGAAGTACCAACCTACAGCTTCTTGGAAGAGAATAAGTTACTCATTGG 954
Query 930 TTGATTAATAAA 941
||||| | ||||
Sbjct 955 TTGATGAGTAAA 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45633131649
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5