BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13450.1
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488165 jgi|Araly1|488165|fgenesh2_kg.6__1299__AT5G13450.1 1580 0.0
> Ahg488165 jgi|Araly1|488165|fgenesh2_kg.6__1299__AT5G13450.1
Length=1016
Score = 1580 bits (855), Expect = 0.0
Identities = 977/1032 (95%), Gaps = 24/1032 (2%)
Strand=Plus/Plus
Query 1 AAGTTATTTTCTTCCTCTGACCAGTTTCATCTCTTTGCTCTCGACAAAGCAGCTGAGCGA 60
||||||||||||||||||||||||||||| | |||| |||||||||| |||
Sbjct 1 AAGTTATTTTCTTCCTCTGACCAGTTTCA------T-CTCT-----AAGCAGCTGATCGA 48
Query 61 CTTTTGCACATTTCTAGGGTTCCAATCAAAATCTATCTGCAACAAAAA------TGGCTA 114
||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 49 CTTCTGCTCATTTCTAGGGTTCCAATCAAAATCTATCTGCAACAAAAATGGCTTTGGCTA 108
Query 115 ATCGTTTCAGATCAGGG-ATCTCCTTCTTCAAGACCATCGCCGTAACAGATTCTGTCTCC 173
||||||||||||| ||| |||||||||||||||| |||||||||| ||||||||||||||
Sbjct 109 ATCGTTTCAGATC-GGGAATCTCCTTCTTCAAGAACATCGCCGTATCAGATTCTGTCTCC 167
Query 174 TCCGTTAGATCCAAGTCGCTTTTCCCAGCGTTGAGAACTTATGCAACTGCTTCTGCTCAA 233
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 168 TCCGTTAGATCCAAGTCGCTTTTCCCAGCGTTGAGAAATTATGCAACTGCTTCGGCTCAA 227
Query 234 ACAACCGCTAATGTTAAGGTGCCTATTGCTTTAGTTGGTGAAAATGGGAACTTTGCTTCA 293
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 228 GCAACCGCCAATGTTAAGGTGCCTATTGCTTTAGTTGGTGAAAATGGCAACTTTGCTTCG 287
Query 294 TGGCTATACATTGCAGCTGTGAAAATGAATTCCTTGGAAAAGATTGAGACGGATCTTTCT 353
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 288 TGGCTATACATTGCAGCTGTGAAAATGAATTCCTTGGAAAAGATTGAGTCGGATCTTTCT 347
Query 354 GAGATGATTGAGGCAATGAAGACAGCTCCTATTTTTGCTCAGTTTACAAAGGATCCCTCT 413
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 348 GAGATGATCGAGGCAATGAAGACTGCTCCTATTTTTGCTCAGTTTACAAAGGATCCCTCT 407
Query 414 GTTCCTAGAGGGACAAGATTGGCTGCTATTAGGGATGCTTGTGATCAAGCAAAGTTTGCC 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 GTTCCTAGAGGGACAAGATTGGCTGCTATTAGGGATGCTTGTGATCAAGCAAAGTTTGCA 467
Query 474 GAACCCACTAAGAACTTCCTCTCTTTGTTAGCTGAGAATGGAAAGCTGAAGAACCTAGAT 533
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 GAACCCACCAAGAACTTCCTCTCTTTGTTAGCTGAGAATGGAAAGCTGAAGAACCTAGAT 527
Query 534 GCCATTGTGAAGAAATTTATGCAGCTGACAAACGCACATAGGGGAGATGTCAAAGTTTTG 593
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 528 GCCATTGTGAAGAAATTTATGCAGCTGACAAACGCACACAGGGGAGATGTCAAAGTTTTG 587
Query 594 GTTACCACAGTCATTCCGCTTCCCCCTGCTGAGGAGAAAGAACTGACTGAGACGCTTCAG 653
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 588 GTTACCACAGTCATGCCGCTTCCCCCTGCTGAGGAGAAAGAACTGACGGAGACGCTTCAG 647
Query 654 GAGATCATTGGAGCAGGGAAGAAAATCACTGTGGAACAAAAGATTGATCCAAGTATCTAC 713
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 648 GAGATCATTGGAGCAGGGAAAAAAATCACTGTGGAACAAAAGATTGATCCGAGTATCTAC 707
Query 714 GGTGGACTAATCGTAGAGTTCCAACAAAAGGTGTTGGACATGTCAATCAGGACAAGGGCA 773
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 708 GGTGGGTTAATCGTAGAGTTCCAACAAAAGGTGTTGGACATGTCTATCAGGACAAGGGCA 767
Query 774 CAACAGATGGAGAGGCTCCTCCGTGAACCTGTTGACTTCAACAACCTCTGAAAATCTTGA 833
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 CAGCAGATGGAAAGGCTCCTCCGTGAACCTGTTGACTTCAACAACCTCTGAAAATCTTGA 827
Query 834 GAGAAATTTCCCCCAAGAAAACATGCTTGTGATGAATGCCACCAATTGACAAATAAATAT 893
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 828 GAGAAATTTCCCC-AAGAAAACATGCTTGTGATGA-TGCCACCAATTGACAAATAAATAT 885
Query 894 GGACCCTCCTGGGAAACAATATAATAGCTGGCCACTTCTCTCCCTTTGAATTTTGTCATT 953
||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||
Sbjct 886 GGACCCTCCTGGGAAACAATATA-TAGCTGGCCACTTATCTCGTTTTGAATTTTGTCATT 944
Query 954 TGCT-TTTTACATATTGTTGTTTGCTTCGAAATAAAGCTTTTCGAGACATCAAATTTCAA 1012
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 TGCAATTTTACATTTTGTTGTTTGCTTCGAAATAAAGCTTTTCGAGACATCAAATTTCAA 1004
Query 1013 TGAGATTGTTTT 1024
||||||||||||
Sbjct 1005 TGAGATTGTTTT 1016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39762202431
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5