BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13460.1
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940812 jgi|Araly1|940812|scaffold_601356.1 2191 0.0
> Ahg940812 jgi|Araly1|940812|scaffold_601356.1
Length=1372
Score = 2191 bits (1186), Expect = 0.0
Identities = 1315/1377 (95%), Gaps = 9/1377 (1%)
Strand=Plus/Plus
Query 309 CAGGTGATGGTTGTACAACAATGGCTAAGAAGAAGGGCTTGTTCACTGTATTGAAAAGGA 368
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 CAGGTGATGGTTGTGCAACAATGGCAAAGAAGAAGGGCTTGTTCACTGTATTGAAAAGGA 60
Query 369 TTTTTATTTCAGAAGTTAATTCagaaaagaaagagaagagaagaaaaTGGACATTTTGGA 428
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTTTATTTCAGAAGCTAATTCAGAAAAGAAAGAGAAGAGAAGAAAATGGACATTTTGGA 120
Query 429 AGCTTAGGATTAAGAAAAGATTACCTTCCATTACAGCACCTCCAGAGCACAGGACAAGTC 488
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 AGCTTAGGATTAAAAAAAGATTACCTTCTATTACAGCACCTCCAGAGCACAGGACAAGTC 180
Query 489 ATGAATCGCATGAGGAACAGAAGGAGGAAATTGTGTCAGATGTGGGTGAGATCAGCCAAG 548
|||||||||| |||||||| |||||||||| |||||||||||||||||| ||||||||||
Sbjct 181 ATGAATCGCACGAGGAACATAAGGAGGAAAGTGTGTCAGATGTGGGTGAAATCAGCCAAG 240
Query 549 TGTCTTGTAGTCGACAGTTAGATTCCATAGAAGAGTCAAAAGGTTCAACATCACCAGAAA 608
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 TGTCTTGTAGTCGACAGTTAGATTCCATAGAAGAGTCAAAAGGTTCAACATCCCCAGAAA 300
Query 609 CTGCTGATCTGGTAGTCCAGTATCAAATGTTTCTTAATAGACAGGAAGAAGTTCTTGCTG 668
| ||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 301 CGGCTGATCTGGTTGTCCAATATCAAATGTTTCTAAATAGACAGGAAGAAGTTCTTGCTG 360
Query 669 CTACTCGCATTCAGACCGCCTTTCGGGGTCATCTTGCAAGGAAAGCTCTACGTGCCTTGA 728
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTACTCGCATTCAGACAGCTTTTCGGGGTCATCTTGCAAGGAAAGCTCTACGTGCCTTGA 420
Query 729 AGGGAATAGTGAAGCTCCAAGCATATATCAGAGGTCGTGCTGTGAGACGCCAAGCAATGA 788
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 421 AGGGAATAGTGAAGCTCCAAGCATATATCAGAGGTCGTGCTGTGAGACGTCAAGCAATGA 480
Query 789 CTACACTAAAATGCCTGCAATCTGTTGTGAACATTCAGTCACAAGTCTGTGGTAAGAGAA 848
|||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 481 CTACACTAAAATGCTTGCAATCTGTGGTGAACATTCAGTCACAGGTCTGTGGTAAGAGAA 540
Query 849 CACAGATTCCCGGAGGTGTTCACAGAGATTATGAAGAGAGCAATATATTCAATGATAACA 908
|||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 541 CACAAATTCCTGGAGGTGCTCACAGAGATTATGAAGAGAGCAATATATTCAATGAGAACA 600
Query 909 TTCTCAAGGTGGACACAAACGGTCAAAAGAGATGGGACGATAGTCTTTTAACAAAGGAAG 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTCTCAAGGTGGACACAAACGGTCAAAAGAGATGGGACGATAGTCTTTTAACAAAGGAAG 660
Query 969 AAAAGGAAGCAGTGGTAATGAGCAAGAAAGAAGCTTCACTAAGAAGAGAAAGGATAAAGG 1028
| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGGCTGAAGCTGTGGTCATGAGCAAGAAAGAAGCTTCACTAAGAAGAGAAAGGATAAAGG 720
Query 1029 AATATGCAGTCACCCACCGGAAATCTGCGGAGTCATACCAGAAACGAAGTAACACTAAAT 1088
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 721 AATATGCAGTCACCCACCGGAAATCCGCGGAGTCATATCAGAAACGAAGTAACACGAAAT 780
Query 1089 GGAAGTACTGGTTAGACGAATGGGTAGATACACAACTAACCAAGAGCAAGGAGCTCGAAG 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GGAAGTACTGGTTAGACGAATGGGTAGATACACAACTAACCAAGAGCAAGGAGCTCGAAG 840
Query 1149 ATCTCGACTTCTCTTCGAAAACAAAACCGAAAGACGAAACTTTGAACGAGAAGCAGCTTA 1208
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 841 ATCTCGACTTCTCTTCAAAAACAAAACCGAAAGACGAAACTTTGAATGAGAAACAGCTTA 900
Query 1209 AAACTCCAAGGAACTCATCACCAAGAAGATT-AGTGAATAATCATAGAAGACAAGTTTCA 1267
||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||
Sbjct 901 AAACTCCAAGGAACTCATCACCAAGAAGATTGA-TGAACAATCATAGAAGACAAGTTTCA 959
Query 1268 ATAGGTGAAGATGAACAAAGCCCTGCCGCGGTCACTA-TCACTACACCAACTTATATGGT 1326
|| |||||||| |||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 960 ATGGGTGAAGAGGAACAAAGCCCTGCCGCGGTGGC-AGTCACTACACCAACTTATATGGT 1018
Query 1327 TGCAACAGAGTCAGCAAAGGCAAAGTCAAGATCATTAAGCTCCCCAAGGATAAGACCGAG 1386
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TGCCACAGAGTCAGCAAAGGCAAAGTCAAGATCATTAAGCTCCCCAAGGATAAGACCGAG 1078
Query 1387 AAGTTTTGACACACAGTCAGAGAGTTACTCGCCATATAAGAACAAGCTATGCCTGACGAC 1446
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 1079 AAGTTTTGACACACAGTCAGAGAGTTACTCACCGTATAAGAACAAGCTATGCCTCACGAC 1138
Query 1447 ATCAATGATGAGTGAAGCACCAAGCAAAGTAAGGATTGCCAACAATGGCAGTAACACTAG 1506
||||||||||||||||||||||||||||| ||||| |||||||||||||||| || ||
Sbjct 1139 CTCAATGATGAGTGAAGCACCAAGCAAAGTGAGGATAGCCAACAATGGCAGTAGTACAAG 1198
Query 1507 ACCAAGTGCATACCAGCAACGGTCTCCAGGGTTAAGGGGATTTAACATAGGCCCTTTGAA 1566
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GCCAAGTGCATACCAGCAACGGTCTCCAGGGTTAAGGGGATTTAACATAGGCCCTTTGAA 1258
Query 1567 ATCATGCAATAATAATAATACTCTATTGAACGATCTCAGCATTAATTCAGAAAGATCTCT 1626
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ATCATGCAATAATAATA---CTCTATTGAACGATCTCAGCATTAATTCAGAAAGATCTCT 1315
Query 1627 ACCTAGCTGGAACAAGCAGAGCAGCTTGAGATGAGTG-G-ATATTGAACCCTGTATA 1681
||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1316 ACCGAGCTGGAACAAGCAGAGCAGCTTGAGATGAGTGTGGATATTGAACCCTGTATA 1372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66543658015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5