BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G13470.1

Length=722
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg893247 jgi|Araly1|893247|Al_scaffold_0006_1243                    715    0.0  


> Ahg893247 jgi|Araly1|893247|Al_scaffold_0006_1243
Length=492

 Score =  715 bits (387),  Expect = 0.0
 Identities = 459/492 (93%), Gaps = 12/492 (2%)
 Strand=Plus/Plus

Query  39   ATGTCACTGGTCGACTACGACGATTCTTCATCCGACGACGATGTTTTAGCCGCCGAGGAG  98
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  1    ATGTCACTGGTCGACTACGACGATTCTTCATCCGACGACGATGTCTTAGCCGCCGAGGAG  60

Query  99   AAACCTCTCCCAC-A--G--A-CGC-A----AA-AGCGTCTGGTTTCTCCAGCTCAATCT  146
            ||||||||||||| |  |  | ||| |    || |||||| ||||||||||||| |||||
Sbjct  61   AAACCTCTCCCACAACCGCAACCGCAACCGCAACAGCGTCGGGTTTCTCCAGCTGAATCT  120

Query  147  TTTCCTCCAAAGAGGCAGAGATTTGAGCAGGACGAGAGTGTTGAGAAGCTACCAGATGCT  206
            ||||||||||  |||||||||| ||||||||| |||| ||||||||||||||||||||||
Sbjct  121  TTTCCTCCAATTAGGCAGAGATGTGAGCAGGAAGAGATTGTTGAGAAGCTACCAGATGCT  180

Query  207  CTGCTTCTTCTGGAGTCACCGACACTCGCTCAGGTGACTGGCGGAGACCATGCTTCCGTT  266
             ||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||
Sbjct  181  TTGCTTCTTCTGGAGTCACCCACACTTGCACAGGTGACTGGCGGTGACCATGCTTCCGTT  240

Query  267  GTTGCAGCTGCAATGGCTGAGAGTGCATTAAGGAAGAGAGACTTGAGTGGGAATGCTTCT  326
            |||||||||||||||||  |||||||| || ||||||||||||||| |||||||||||||
Sbjct  241  GTTGCAGCTGCAATGGCCCAGAGTGCAGTACGGAAGAGAGACTTGAATGGGAATGCTTCT  300

Query  327  TCTCTTCCTCGTCGTCCCAAGCTACCAAGAGGAAATTTGCCTCATTCAAAGAATTATCCT  386
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  301  TCTCTTCCTCGTCGTCCCAAGCTACCAAGAGGAAATTTGCCTCATTCCAAGAATTATCCT  360

Query  387  GAAACTTTGGGTAATGTGCTTGTGCCTCCTCAGCTCAAGGGAAGGAGCAATGTTGCTACA  446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  GAAACTTTGGGTAATGTGCTTGTGCCTCCTCAGCTCAAGGGAAGGAGCAATGTTGCTACA  420

Query  447  GAGGATATGAGCAGGCTTTTTGTGAAAAAACGGCAAGACTCCACCAAGGCAAAATCTCCA  506
            |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct  421  GAGGATATGAGCAGGCTTTTTGTGAAAAAACGGCAAGACTCCTCCAAGGCAAGATCTCCA  480

Query  507  GATCAGGAATAG  518
            ||||||||||||
Sbjct  481  GATCAGGAATAG  492



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26571673149


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5