BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13490.1
Length=1516
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488169 jgi|Araly1|488169|fgenesh2_kg.6__1303__AT5G13490.1 1927 0.0
Ahg478157 jgi|Araly1|478157|fgenesh2_kg.3__858__AT3G08580.2 1166 0.0
Ahg491934 jgi|Araly1|491934|fgenesh2_kg.7__1367__AT4G28390.1 645 0.0
> Ahg488169 jgi|Araly1|488169|fgenesh2_kg.6__1303__AT5G13490.1
Length=1356
Score = 1927 bits (1043), Expect = 0.0
Identities = 1191/1259 (95%), Gaps = 23/1259 (2%)
Strand=Plus/Plus
Query 24 TTCTTCTTCGCTCAGCTCCGACAACG-AAGGGCGAAGAA--TCTCGCTCCCTCAATTTCG 80
|||||||||||||||||||||||| | |||||||||||| ||||||||||||| |||||
Sbjct 1 TTCTTCTTCGCTCAGCTCCGACAA-GAAAGGGCGAAGAATCTCTCGCTCCCTCAGTTTCG 59
Query 81 CATT-GCCATCGATTTTCTTAGAGGTTAAAATGGTTGAACAGACTCAGCACCCCACGATT 139
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 C-TTGGCCATCGATTTTCTTAGAGGTTAAAATGGTTGAACAGACTCAGCACCCCACGATT 118
Query 140 CTTCAGAAGGTTTCTGGCCAACTCTTGAGCT-CGAGTGTTTCTCAGGACATTCGTGGTTA 198
|| ||||||| |||||||||| ||||| | | || |||||||||||||||||||||||||
Sbjct 119 CTGCAGAAGGCTTCTGGCCAAATCTTGCGTTCCG-GTGTTTCTCAGGACATTCGTGGTTA 177
Query 199 TGCTTCGGC-TTCCAAAAGGCCTGCTACATACCAGAAACATGCAGCTTACGGAAACTACT 257
|||||| || |||| | |||||||| |||||||||| ||||||||||||||||||||||
Sbjct 178 TGCTTCCGCTTTCC-AGAGGCCTGCCACATACCAGAGGCATGCAGCTTACGGAAACTACT 236
Query 258 CCAATGCTGCATTTCAATATCCTCTTGTGGCTGCATCTCAG-ATTGCAACTACTACTTCT 316
||||||||||||| ||||||||||||||||||||||||| | |||||||| |||||||||
Sbjct 237 CCAATGCTGCATTCCAATATCCTCTTGTGGCTGCATCTC-GAATTGCAACAACTACTTCT 295
Query 317 CCTGTGTTTGTCCAAGCTCCAGGAGAGAAGGGATTTACTAACTTTGCTATTGATTTCATG 376
|| |||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| ||
Sbjct 296 CCCGTGTTTGTCCAAACTCCAGGAGAGAAAGGATTTACTAACTTTGCGATTGATTTCCTG 355
Query 377 ATGGGTGGTGTTTCTGCTGCTGTGTCAAAGACTGCTGCTGCTCCCATTGAGCGTGTCAAG 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 ATGGGTGGTGTTTCTGCTGCTGTGTCAAAGACTGCTGCTGCTCCCATTGAGCGTGTCAAG 415
Query 437 CTTTTGATTCAAAACCAGGATGAGATGCTTAAGGCTGGAAGGCT-TACTGAGCCATACAA 495
||||||||||||||||||||||||||||||||||||||||| || | ||||||| |||||
Sbjct 416 CTTTTGATTCAAAACCAGGATGAGATGCTTAAGGCTGGAAGACTCT-CTGAGCCCTACAA 474
Query 496 GGGTATTCGTGACTGTTTCGGCAGGACAATTAGGGATGAA-GGTATTGGTTCGT-TGTGG 553
||||||| |||||||||||||||||||||||| ||||||| ||| ||||||| | |||||
Sbjct 475 GGGTATTGGTGACTGTTTCGGCAGGACAATTAAGGATGAAGGGT-TTGGTTC-TCTGTGG 532
Query 554 AGAGGAAACACCGCTAATGTTATCCGTTACTTCCCCACTCAGGCCTTGAACTTTGCATTC 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 AGAGGAAACACCGCTAATGTTATCCGTTACTTCCCCACTCAGGCCTTGAACTTTGCATTC 592
Query 614 AAAGATTACTTCAAGAGGCTTTTCAACTTCAAGAAAGACAAGGATGGCTACTGGAAGTGG 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AAAGATTACTTCAAGAGGCTTTTCAACTTCAAGAAAGACAAGGATGGCTACTGGAAGTGG 652
Query 674 TTTGCTGGTAACTTGGCATCTGGAGGTGCTGCTGGTGCCTCTTCCCTTCTCTTTGTGTAC 733
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 653 TTTGCTGGTAACTTGGCATCTGGAGGTGCTGCTGGGGCCTCTTCCCTTCTCTTTGTGTAC 712
Query 734 TCTCTTGACTATGCACGTACCCGTCTTGCCAATGACTCCAAGTCTGCCAAGAAGGGAGGA 793
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TCTCTTGACTATGCGCGTACCCGTCTTGCCAATGACTCCAAGTCTGCCAAGAAGGGAGG- 771
Query 794 GGTGAAAGGCAGTTCAATGGTCTTGTTGATGTCTACAAGAAGACCCTCAAGTCAGATGGT 853
|| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 772 GG--AAAGGCAGTTCAATGGTTTTGTTGATGTCTACAAGAAGACCCTCAAGTCCGATGGT 829
Query 854 ATTGCTGGACTTTACCGTGGTTTCAACATCTCGTGTGCTGGTATCATTGTCTACCGTGGT 913
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 830 ATTGCTGGACTTTACCGTGGGTTCAACATCTCCTGTGCTGGTATCATTGTCTACCGTGGT 889
Query 914 CTCTACTTTGGACTGTACGACTCTGTGAAGCCTGTCCTCCTCACTGGAGACCTGCAGGAC 973
|| |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||
Sbjct 890 CTTTACTTTGGACTGTACGACTCTGTGAAGCCTGTCCTCCTGACTGGTGACTTGCAGGAC 949
Query 974 AGTTTCTTCGCTAGTTTTGCTCTTGGATGGCTCATCACCAATGGTGCGGGTCTTGCGTCG 1033
|| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 950 AGCTTCTTTGCTAGTTTTGCTCTTGGATGGCTCATCACTAATGGTGCGGGTCTTGCGTCC 1009
Query 1034 TACCCGATTGACACGGTTAGAAGAAGAATGATGATGACATCAGGTGAAGCGGTGAAGTAC 1093
|||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||
Sbjct 1010 TACCCGATTGACACGGTTCGTAGAAGAATGATGATGACATCAGGTGAAGCCGTGAAGTAC 1069
Query 1094 AAGAGCTC-ATTTGATGCGTTCTCACAGATCGTGAAGAAGGAAGGAGCCAAGTCTCTGTT 1152
|| || || || |||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1070 AAAAGTTCGATG-GATGCGTTCTCACAGATCCTGAAGAAGGAAGGAGCCAGGTCTCTGTT 1128
Query 1153 CAAGGGTGCGGGTGCCAACATCCTGCGTGCCGTTGCAGGTGCTGGTGTGCTTGCTGGCTA 1212
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 CAAGGGTGCTGGTGCCAACATCCTGCGTGCCGTTGCAGGTGCTGGTGTGCTTGCTGGCTA 1188
Query 1213 CGACAAGCTGCAGTTAATCGTCTTCGGCAAGAAGTATGGATCTGGAGGTGCCTAAGTAC 1271
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 CGACAAGCTGCAGTTAATCGTCTTCGGCAAGAAGTATGGATCTGGAGGTGCCTAAGTAC 1247
Score = 80.5 bits (43), Expect = 3e-14
Identities = 49/52 (94%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 1435 TATGGAATAAATTTTGTATGGGAGGGAGATTTGACTCCTTCGAACCAGGCTA 1486
|||||||||||||||||||||||||||||||||||||||| ||| || ||||
Sbjct 1305 TATGGAATAAATTTTGTATGGGAGGGAGATTTGACTCCTTGGAAGCAAGCTA 1356
> Ahg478157 jgi|Araly1|478157|fgenesh2_kg.3__858__AT3G08580.2
Length=1531
Score = 1166 bits (631), Expect = 0.0
Identities = 1016/1198 (85%), Gaps = 41/1198 (3%)
Strand=Plus/Plus
Query 86 CCATCGATTTTCTTAGAGGTT-AAAATGGTTGAAC-AGACTCAGCACCCCACGATT-CTT 142
||||||| |||||||| ||| ||||||||||| | || |||||||||||| ||| |
Sbjct 141 CCATCGA--TTCTTAGA-GTTCAAAATGGTTGATCAAG-TTCAGCACCCCACTATTGC-G 195
Query 143 CAGAAGGTTTCTGGCCAACTCTTGAGCTCGAGTGTTTCTC-AGGACATTCGTGGTTATGC 201
||||| | | |||| || || || | || |||||||| | ||| | ||| |||
Sbjct 196 CAGAAAGCTGCTGGGCAGTTCATGCGTTCAAGTGTTTC-CAAGG--A--CGT--CCATG- 247
Query 202 TTCGGCTT-CCAAAAGGCCTGCTACATACCAGAAACATGCAGCTTACGGAAACTACTCCA 260
| || || || | |||||| ||| ||||||| ||||||| | || |||||||||||||
Sbjct 248 -T-GGGTTACC-AGAGGCCTTCTATGTACCAGAGACATGCAACCTATGGAAACTACTCCA 304
Query 261 ATGCTGCATTTCAATATCCTCTTGTGGC-TGCATCTCAGAT--T-GCAACTACTACTTCT 316
|||||||||| |||| ||||| | | |||| | ||| | ||||||||| |||||
Sbjct 305 ATGCTGCATTCCAATTTCCTC---CCACAT-CATCCCGGATGCTGGCAACTACTGCTTCT 360
Query 317 CCTGTGTTTGTCCAAGCTCCAGGAGAG-AAGGGATTTACTAACTTTGCTATTGA-TTTCA 374
||||||||||| ||| |||| |||||| ||||| || ||||||||||| |||| ||||
Sbjct 361 CCTGTGTTTGTTCAAACTCCTGGAGAGAAAGGG-TTCACTAACTTTGCCCTTGACTTTC- 418
Query 375 TGATGGGTGGTGTTTCTGCTGCTGTGTCAAAGACTGCTGCTGCTCCCATTGAGCGTGTCA 434
|||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| |
Sbjct 419 TGATGGGTGGTGTTTCTGCTGCCGTCTCAAAGACTGCTGCTGCTCCTATTGAGCGTGTTA 478
Query 435 AGCTTTTGATTCAAAACCAGGATGAGATGCTTAAGGCTGGAAGGCTTACTGAGCCATACA 494
|||||||||| || ||||||||||||||| |||| ||||| || ||| |||| || ||||
Sbjct 479 AGCTTTTGATCCAGAACCAGGATGAGATGATTAAAGCTGGCAGACTTTCTGAACCTTACA 538
Query 495 AGGGTATTCGTGACTGTTTCGGCAGGACAATTAGGGATGAA-GGTATTGGTTCGT-TGTG 552
|||||||| ||||||||||||| ||||| || | ||||||| ||| ||||||| | | ||
Sbjct 539 AGGGTATTGGTGACTGTTTCGGTAGGACCATAAAGGATGAAGGGT-TTGGTTC-TCTATG 596
Query 553 GAGAGGAAACACCGCTAATGTTATCCGTTACTTCCCCACTCAGGCCTTGAACTTTGCATT 612
|||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 597 GAGAGGAAACACTGCCAATGTCATCCGTTACTTCCCCACTCAGGCCTTGAACTTTGCCTT 656
Query 613 CAAAGATTACTTCAAGAGGCTTTTCAACTTCAAGAAAGACAAGGATGGCTACTGGAAGTG 672
||||||||||||||| |||||||||||||||||||| |||| |||||| |||||||||||
Sbjct 657 CAAAGATTACTTCAAAAGGCTTTTCAACTTCAAGAAGGACAGGGATGGTTACTGGAAGTG 716
Query 673 GTTTGCTGGTAACTTGGCATCTGGAGGTGCTGCTGGTGCCTCTTCCCTTCTCTTTGTGTA 732
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 717 GTTTGCTGGTAACTTGGCATCTGGAGGAGCAGCTGGTGCCTCTTCCCTTCTCTTTGTGTA 776
Query 733 CTCTCTTGACTATGCACGTACCCGTCTTGCCAATGACT-CCAAGTCTGCCAAGAAGGGAG 791
|| ||||||||||| ||||||||||| || ||||| | ||||| |||| ||||| ||||
Sbjct 777 TTCCCTTGACTATGCCCGTACCCGTCTAGCTAATGA-TGCCAAGGCTGCAAAGAAAGGAG 835
Query 792 GAGGTGAAAGGCAGTTCAATGGTCTTGTTGATGTCTACAAGAA-GACCCTCAAGTCAGAT 850
| |||| || ||||| ||||||||||||||||||||| ||| ||| |||||| | |||
Sbjct 836 GTGGTGGCAGACAGTTTGATGGTCTTGTTGATGTCTACA-GAAAGACACTCAAGACTGAT 894
Query 851 GGTATTGCTGGACTTTACCGTGGTTTCAACATCTCGTGTGCTGGTATCATTGTCTACCGT 910
||||||||||| || |||||||| ||||||||||| |||| |||||||||||||||||||
Sbjct 895 GGTATTGCTGGTCTATACCGTGGATTCAACATCTCCTGTGTTGGTATCATTGTCTACCGT 954
Query 911 GGTCTCTACTTTGGACTGTACGACTCTGTGAAGCCTGTCCTCCTCACTGGAGACCTGCAG 970
||||| ||||||||||| || ||||||||||||||||| ||||||||||||||| | |||
Sbjct 955 GGTCTGTACTTTGGACTCTATGACTCTGTGAAGCCTGTTCTCCTCACTGGAGACTTACAG 1014
Query 971 GACAGTTTCTTCGCTAGTTTTGCTCTTGGATGGCTCATCACCAATGGTGCGGGTCTTGCG 1030
|||||||||||||||||||| |||||||||||| | || ||||| |||||||| |||||
Sbjct 1015 GACAGTTTCTTCGCTAGTTTCGCTCTTGGATGGGTTATTACCAACGGTGCGGGGCTTGCA 1074
Query 1031 TCGTACCCGATTGACACGGTTAGAAGAAGAATGATGATGACATCAGGTGAAGCGGTGAAG 1090
|| ||||| |||||||| || | ||||||||||||||||| || |||||||| || |||
Sbjct 1075 TCCTACCCCATTGACACTGTCCGCAGAAGAATGATGATGACGTCTGGTGAAGCAGTCAAG 1134
Query 1091 TACAAGAGCTCATTTGATGCGTTCTCACAGATCGTGAAGAAGGAAGGAGCCAAGTCTCTG 1150
|||||||| || || || || ||| | |||||| | ||||| |||||||||||||| ||
Sbjct 1135 TACAAGAGTTCGTTGGACGCCTTCACCCAGATCCTCAAGAACGAAGGAGCCAAGTCACTC 1194
Query 1151 TTCAAGGGTGCGGGTGCCAACATCCTGCGTGCCGTTGCAGGTGCTGGTGTGCTTGCTGGC 1210
|||||||| || ||||||||||| |||||||| ||||||||||||||||||||| | ||
Sbjct 1195 TTCAAGGGAGCTGGTGCCAACATTCTGCGTGCTGTTGCAGGTGCTGGTGTGCTTTCCGGT 1254
Query 1211 TACGACAAGCTGCAGTTAATCGTCTTCGGCAAGAAGTATGGATCTGGAGGTGCCTAAG 1268
|||||||| ||||| | || |||||||| |||||||| ||||| |||||||| ||||
Sbjct 1255 TACGACAAATTGCAGCTGATTGTCTTCGGTAAGAAGTACGGATCAGGAGGTGCTTAAG 1312
> Ahg491934 jgi|Araly1|491934|fgenesh2_kg.7__1367__AT4G28390.1
Length=1389
Score = 645 bits (349), Expect = 0.0
Identities = 735/918 (80%), Gaps = 39/918 (4%)
Strand=Plus/Plus
Query 368 GATTTCATGATGGGTGGTGTTTCTGCTGCTGTGTCAAAGACTGCTGCTGCTCCCATTGAG 427
|||||| | ||||| || || || |||||||| || ||||| || || || || || |||
Sbjct 349 GATTTCCTTATGGGAGGAGTCTCAGCTGCTGTTTCGAAGACGGCAGCAGCGCCGATAGAG 408
Query 428 CGTGTCAAGCTTTTGATTCAAAACCAGGATGAGATGCTTAAGGCTGGAAGGCT-TACTGA 486
||||| ||||| |||||||| || || ||||| ||| | || ||||| | || | ||||
Sbjct 409 CGTGTTAAGCTCTTGATTCAGAATCAAGATGAAATGATCAAAGCTGGGCGTCTCT-CTGA 467
Query 487 GCCATACAAGGGTATTC-GTGACTGTTTCGGCAGGACAATTAGGGATGAAGGTATTGGTT 545
||||||||| || | || |||| ||||| ||| | ||| | | || ||||| | || ||
Sbjct 468 GCCATACAAAGG-AATCAGTGATTGTTTTGGCCGAACAGTCAAAGACGAAGG-AATGATT 525
Query 546 CG-T-TGTGGAGAGGAAACACCGCTAATGTTATCCGTTACTTCCCCACTCAGGCCTTGAA 603
| | | |||||||||||||| || ||||||||| | ||||||||||||||||| || ||
Sbjct 526 -GCTCTTTGGAGAGGAAACACTGCCAATGTTATCAGATACTTCCCCACTCAGGCTTTAAA 584
Query 604 CTTTGCATTCAAAGATTACTTCAAGAGGCT-TTTCAACTTCAAGAAAGACAAGGATGGCT 662
|||||| |||||||||||||| |||||||| ||| |||||||||||||| || |||||||
Sbjct 585 CTTTGCTTTCAAAGATTACTTTAAGAGGCTGTTT-AACTTCAAGAAAGAAAAAGATGGCT 643
Query 663 ACTGGAAGTGGTTTGCTGGTAACTTGGCATCTGGAGGTGCTGCTGGTGCCTCTTCCCTTC 722
||||||||||||||||||| ||| |||| ||||| ||||| |||||||| || || || |
Sbjct 644 ACTGGAAGTGGTTTGCTGGGAACCTGGCGTCTGGTGGTGCAGCTGGTGCATCGTCTCTGC 703
Query 723 TCTTTGTGTACTCTCTT-GACTATGCACGTACCCGTCTT-GCCAATGACT-CCAAGTCTG 779
| |||||||||||| || || || || ||||||||| || |||||||| | | ||| | |
Sbjct 704 TTTTTGTGTACTCT-TTGGATTACGCTCGTACCCGT-TTGGCCAATGA-TGCGAAGGCGG 760
Query 780 CCAAGAAGGGAGGAGGTGAAAGGCAGTTCAATGGTC-TTGTTGATGTCTACAAGAAGACC 838
||||||| ||| ||| | |||||||| ||||| | | || || || ||||||||||||
Sbjct 761 CCAAGAA---AGGTGGTCAGAGGCAGTTTAATGG-CATGGTCGACGTGTACAAGAAGACC 816
Query 839 CTCAAG--TCAGATGGTATTGCT-GGACTTTACCGTGGTTTCAACATCTCGTGTGCTGGT 895
| || || ||||| |||| | || ||||||||||||||||||||||| |||| |||
Sbjct 817 AT--AGCCTCTGATGGCATTG-TCGGGCTTTACCGTGGTTTCAACATCTCATGTGTTGGA 873
Query 896 ATCATTGTCTACCGTGGTCTCTACTTTGGACTGTACGACT-CTGTGAAGCCTGTCCTCCT 954
|| | || || ||||| || ||||||||| |||| || | || |||||||||| | |
Sbjct 874 ATTGTCGTGTATCGTGGGCTTTACTTTGGATTGTATGATTCCT-TGAAGCCTGTGGT-TT 931
Query 955 CACTGGA-GACCTGCAGGACAG-TTTCTTCGCTAGTTTTGC-T-CTTGGATGGCTCATCA 1010
| | || | || ||||| || || ||| || || ||| | | || |||||| ||||
Sbjct 932 TAGTTGATGGTCTCCAGGATAGCTTCCTT-GCGAG-TTT-CTTACTGGGATGGGGAATCA 988
Query 1011 CCAATGGTGCGGGTCTTGCGTCGTACCCGATTGACACGGTTAGAAGAAGAATGATGATGA 1070
||| ||| || || || ||||| ||||| ||||||||||| | ||||||||||||||||
Sbjct 989 CCATTGGAGCTGGACTGGCGTCTTACCCAATTGACACGGTGCGCAGAAGAATGATGATGA 1048
Query 1071 CATCAGGTGAAGCGGTGAAGTACAAGAGCTCAT-TTGATGCGTTCTCACAGATCGTGAAG 1129
||||||||||||| ||||||||||||||||| | || | || ||||| |||||||| |||
Sbjct 1049 CATCAGGTGAAGCAGTGAAGTACAAGAGCTC-TCTTCAGGCCTTCTCTCAGATCGTCAAG 1107
Query 1130 AAGGAAGGAGCCAAGTCTCTGTTCAAGGGTGCGGGTGCCAACATCCTGCGTGCCGTTGCA 1189
|| ||||| |||||||| || ||||||||||| |||||||||||||| ||||||||||||
Sbjct 1108 AAAGAAGGGGCCAAGTCACTCTTCAAGGGTGCAGGTGCCAACATCCTCCGTGCCGTTGCA 1167
Query 1190 GGTGCTGGTGTGCTTGCTGGCTACGACAAGCTGCAGTTAATCGTCTTCGGCAAGAAGTAT 1249
|| |||||||| || || ||||| ||||| || ||| | || || || ||||||||||||
Sbjct 1168 GGCGCTGGTGTACTCGCCGGCTATGACAAACTTCAGCTCATTGTGTTGGGCAAGAAGTAT 1227
Query 1250 GGATCTGGAGGTGCCTAA 1267
|| ||||| |||| ||||
Sbjct 1228 GGCTCTGGTGGTGGCTAA 1245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56754465050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5