BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13500.1
Length=1583
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488171 jgi|Araly1|488171|fgenesh2_kg.6__1305__AT5G13500.1 2078 0.0
> Ahg488171 jgi|Araly1|488171|fgenesh2_kg.6__1305__AT5G13500.1
Length=1494
Score = 2078 bits (1125), Expect = 0.0
Identities = 1423/1554 (92%), Gaps = 72/1554 (5%)
Strand=Plus/Plus
Query 34 TAATTCGTTAATGACGCACCGTTAGTCAACTCCGCTT-CGT-A-TTAATTACTCCTCCGA 90
|||||||||||||||||||||||||||||| |||||| | | | || |||||||||||||
Sbjct 1 TAATTCGTTAATGACGCACCGTTAGTCAACACCGCTTCCCTCATTTTATTACTCCTCCGA 60
Query 91 TCTCTTTCTTATTCTTCTCCGGCGACA---CTTCCCTTG---CTTCTCCCTCTTAGGACT 144
|| ||||||||||||||||||||| ||||||||| ||||||||||||||| ||
Sbjct 61 --TC--TCTTATTCTTCTCCGGCGACACTTCTTCCCTTGATTCTTCTCCCTCTTAGGTCT 116
Query 145 CTCTCTACGAATCTGTAAGCTTCAAATTCTTACGCCACACTCCGAG-ATTCGCTTCTGAT 203
||||||||||||| | | | |||||||||| ||||||||||| || ||||||||||
Sbjct 117 CTCTCTACGAATC--T---C-T--AATTCTTACGTCACACTCCGAGAATCCGCTTCTGAT 168
Query 204 TATTGTATGAATTTTTGAGCTCCAAGGATCCACTGCCATGTATTTATGCTGCTAAAGCTT 263
||||| |||||||| |||||||||||| | | || | ||||| ||||||
Sbjct 169 TATTGAATGAATTTCTGAGCTCCAAGG----A-T-CC--------A--CTGCT-AAGCTT 211
Query 264 GAAGGCAGTAGTGGAATCACCATTAAGTTCTTTGC-TTTGTAATTTAGCTTGATTTGAGA 322
|||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||
Sbjct 212 GAAGGCAGTAGTGGAATCACCAATAAG---TTTGCTTTTGTAATTTAGCTTGATTTGAGG 268
Query 323 ATAAACAAATGGGAAAAGCATCAGGCTTGCTTCTGTTTCTCTTGGGTTTTGGGTTCTTTG 382
|||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 ATAATC-AATGGGCAAAGCATCAGGCTTGCTTCTGTTTCTCTTGGGTTTTGGGTTCTTTG 327
Query 383 TTGTCACATATAATCTTCTGACACTTATAGTTCACAATAGATCTGGTGTGAGTAATTCAG 442
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 328 TTGTCACATATAATCTTCTAACACTTATAGTTCACAATAGATCTGGTGTGAGTAATTCAG 387
Query 443 ATGGAAGTCCACTTCTGGATCCTGTTGTTCAGATGCCTCTAAATATTAGGAAAGCCAAGA 502
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 388 ATGGAAGTCCACTTCTAGATCCTGTTGTTCAGATGCCTCTAAATATTAGGAAGGCTAAGA 447
Query 503 GTTCTCCAGCACCTTTTCATGTTGCCTTAACAGCTACAGATGCACCTTATAATAAGTGGC 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 GTTCTCCAGCACCTTTTCATGTTGCCTTAACAGCTACAGATGCACCTTATAATAAGTGGC 507
Query 563 AGTGTCGTATTATGTATTATTGGTATAAGCAGAAGAAAGCTCTTCCTGGTTCTGATATGG 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 AGTGTCGTATTATGTATTATTGGTATAAGCAGAAGAAAGCTCTTCCTGGTTCTGATATGG 567
Query 623 GTGGCTTCACCCGTATTTTGCATTCCGGTAATTCTGATAACTTGATGGATGAAATACCCA 682
|||||||||| || |||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 568 GTGGCTTCACTCGCATTTTGCATTCCGGTAATCCCGATAACTTGATGGATGAAATACCCA 627
Query 683 CATTTGTGGTTGATCCTCTTCCTCCAGGTCTTGATCGGGGGTATGTTGTCTTGAATAGAC 742
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 628 CATTTGTGGTTGATCCTCTTCCCCCAGGTCTTGATCGGGGGTATGTTGTCTTGAATAGAC 687
Query 743 CATGGGCATTCGTGCAATGGCTTGAAAGAGCTACCATCAAGGAAGACTATGTGCTCATGG 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 CATGGGCATTCGTGCAATGGCTTGAAAGAGCTACCATCAAGGAAGACTATGTGCTCATGG 747
Query 803 CAGAGCCTGATCATGTATTTGTTAATCCCCTTCCCAATTTGGCTGTTGGAGGATTCCCAG 862
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 748 CCGAGCCTGATCATGTATTTGTTAACCCCCTTCCCAATTTGGCTGTTGGAGGATTTCCAG 807
Query 863 CCGCTTTTCCGTTTTTCTATATTACTCCTGAAAAGTATGAAAACATAGTCAGAAAGTATT 922
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 808 CCGCTTTTCCGTTTTTCTATATTACACCTGAAAAGTACGAAAACATAGTCAGAAAGTATT 867
Query 923 ATCCAGCGGAGATGGGGCCAGTAACAAATATCGACCCCATTGGCAACTCTCCTGTTATCA 982
|||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 868 ATCCAGTGGAGATGGGGCCTGTAACAAATATCGATCCCATTGGCAACTCTCCTGTTATCA 927
Query 983 TAAGCAAGGAATCACTTGAAAAGATTGCTCCTACATGGATGAATGTCTCGCTGACAATGA 1042
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 928 TAAGAAAGGAATCACTTGAAAAGATTGCTCCTACATGGATGAATGTCTCGCTGACGATGA 987
Query 1043 AAAACGATCCAGAAACTGATAAGGCATTTGGATGGGTGCTGGAAATGTACGGTTACGCAA 1102
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 988 AAAACGATCCAGAAACTGATAAGGCATTTGGATGGGTGTTGGAAATGTATGGTTACGCAA 1047
Query 1103 TTGCATCTGCTATACATGGGGTGCGTCACATACTTCGGAAGGATTTCATGCTTCAGCCTC 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 TTGCATCTGCTATACATGGGGTGCGTCACATACTTCGGAAGGATTTCATGCTTCAGCCTC 1107
Query 1163 CGTGGGATTTGTCTACCAAGGGGAAGTTTATCATTCATTACACTTATGGATGCGACTACA 1222
| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1108 CATGGGATTTGTCTACCAAGGGGAAGTTTATCATCCATTACACTTATGGATGCGATTACA 1167
Query 1223 ACATGAAGGGGGAGCTGACATATGGCAAAATAGGAGAGTGGCGATTCGATAAGAGATCAC 1282
|||||||||| |||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 1168 ACATGAAGGGTGAGCTGACATATGGCAAAATTGGAGAGTGGCGTTTTGATAAGAGATCAC 1227
Query 1283 ATTTGCGGGGTCCTCCTCCAAGGAACATGTCCTTGCCGCCTCCCGGTGTTCCCGAAAGTG 1342
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1228 ATTTGCGGGGTCCTCCTCCGAGGAACATGTCCTTGCCGCCTCCCGGTGTTCCGGAAAGTG 1287
Query 1343 TGGTGACACTTGTGAAGATGGTGAATGAAGCTACTGCGACTATCCCTAATTGGGACACTC 1402
||||||| |||||||| |||||||||||||| ||| | | ||||||||||||||||||||
Sbjct 1288 TGGTGACTCTTGTGAAAATGGTGAATGAAGCAACTTCCAATATCCCTAATTGGGACACTC 1347
Query 1403 TCTAACTCACATCCACACACAAAACACAAACCATAGGGACAAATCCATACAGCAACAATA 1462
||||||| |||||||| | || ||| ||||||||||||||| ||||||||||| |
Sbjct 1348 CCTAACTCGCATCCACA-A-AA--CACGAACCATAGGGACAAAGCCATACAGCAA---T- 1399
Query 1463 TTTTGCCTAAtttttttttCCTTCTCCCTTTACTTCCCTTCTTGTCTGTTTTTTCTTGTA 1522
|||| | | || | | | || ||||||||| || || |||||||||| || |
Sbjct 1400 TTTT-C-T--TT-------C-T-C-CC-TTTACTTCC-TT-TTATCTGTTTTTT-TT-TC 1440
Query 1523 A-TGGTTAAATTATGAACTTGAGTAGTAAATTACAAAATTATTTGTTTGACACG 1575
| |||||||||||| |||| ||||||||||||| ||||||||||||||| |||
Sbjct 1441 ACTGGTTAAATTATAAACTCGAGTAGTAAATTATGAAATTATTTGTTTGAGACG 1494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59306511465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5