BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13510.1
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488173 jgi|Araly1|488173|fgenesh2_kg.6__1307__AT5G13510.1 1149 0.0
> Ahg488173 jgi|Araly1|488173|fgenesh2_kg.6__1307__AT5G13510.1
Length=757
Score = 1149 bits (622), Expect = 0.0
Identities = 717/761 (94%), Gaps = 13/761 (2%)
Strand=Plus/Plus
Query 5 ACAGTCTCCTCATCTTCTGAGCaaaaaaaTGGAAGTGGctcttctctccttctcttcttc 64
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ACAGTCTCCTCATCTTCTGAGC--GAAAATGGAAGTGGCTCTTCTCTCCTTCTCTTCTTC 58
Query 65 cttgtctcctctctGTCACCAGCGAATCTCAACTCTCACACCCAAAACCTCGAATTCCCC 124
|||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||
Sbjct 59 CTTGTCTCCTCTCTGTCACCAGCGAATCTCAACTCTTACACACAAAACCTCAAATTCCCC 118
Query 125 AAATTACCCTCGCCTCCCGGTCATCAGATCCGCGGTGTCTCGTAACAAGAAGGAAGAGAC 184
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 119 AAACTACCCTCGCCTCCCGGTCATCAGATCCGCCGTGTCTCGTAACAAGAAGGAAGAGAC 178
Query 185 TGTCGAAGCCGTCAAGTCTCACTTGGAGAACTGCCATCTCCTCGCCGCCATCAACTACAA 244
||||||||||||||||| ||| ||||||||||||| ||||| |||||||||||||||||
Sbjct 179 AGTCGAAGCCGTCAAGTCCCACCTGGAGAACTGCCACCTCCTTGCCGCCATCAACTACAA 238
Query 245 AGGCCTCACCGTCAAGCAGTTTCAAGACCTCCGGAGAACTCTCCCCGACACTACAAAGCT 304
|||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 239 AGGCCTCACCGTGAAACAGTTTCAAGACCTCCGGAGAACTCTCCCCGACACCACAAAGCT 298
Query 305 CATCGTCGCCAAGAACACTTTGGTCTTCAAAGCCATTGAAGGCACCAAATGGGAAGCTCT 364
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 299 CATCGTCGCTAAGAACACTTTGGTCTTCAAAGCCATTGAAGGCACTAAATGGGAAGCTCT 358
Query 365 CAAGCCTTGTATGAAAGGCATGAACGCTTGGCTTTTCGTCCAGACCGATGAAATCCCTTC 424
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 359 CAAGCCTTGTATGAAAGGCATGAACGCTTGGCTTTTCGTCCAAACCGATGAAATCCCTTC 418
Query 425 TGCTATCAAACCCTACCGGAGCTTCCAGAAGGAACGCAAGCTTGAAAACAATGACTTTGC 484
|| |||| ||||||||||| |||||||| ||||||||||||||| |||||||||||||
Sbjct 419 CGCCCTCAAGCCCTACCGGAGTTTCCAGAAAGAACGCAAGCTTGAAGACAATGACTTTGC 478
Query 485 CGGCGCTGTCTTCGAAGGTAAGTTCTACGCTCCTGACAA-TTTCAAAGTCCTCGAGACCA 543
||||||||||||||||||||||||||||||||| ||||| ||| ||||| ||||||||||
Sbjct 479 CGGCGCTGTCTTCGAAGGTAAGTTCTACGCTCCCGACAACTTT-AAAGTTCTCGAGACCA 537
Query 544 TGCCCACTCGTGCTGAGGTCTACGCTAAGATGCTCGGTGCTCTGCAATCTCCGGCTATTA 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 538 TGCCCACTCGTGCTGAGGTCTACGCTAAGATGCTCGGTGCTCTGCAATCTCCGGCCATTA 597
Query 604 ATCTCGTCACTACTTTACAAGCACCAGCAAGAGAGGTTATAATGGTGCTTATGGCTTACA 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 598 ATCTCGTCACTACTTTACAAGCACCAGCAAGAGAGGTTATAATGGTGCTTATGGCTTATA 657
Query 664 TTAAGAAGTTGGAAGATGAGAGTAATGCATAGTTAA----GCTTGTACTAATC-T-TTT- 716
| ||||||||||| |||||||||||||||||||||| ||| ||||||||| | |||
Sbjct 658 TCAAGAAGTTGGAGGATGAGAGTAATGCATAGTTAATTAAGCT-GTACTAATCATCTTTT 716
Query 717 GGAGAATGTAATGTACGCAACAAAAGGCAATTC-AATTTTT 756
||||||||||||||||||||||||||| ||||| |||||||
Sbjct 717 GGAGAATGTAATGTACGCAACAAAAGGAAATTCCAATTTTT 757
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30841439853
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5