BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13550.1
Length=2256
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940820 jgi|Araly1|940820|scaffold_601364.1 3419 0.0
Ahg928972 jgi|Araly1|928972|scaffold_301429.1 1899 0.0
> Ahg940820 jgi|Araly1|940820|scaffold_601364.1
Length=2103
Score = 3419 bits (1851), Expect = 0.0
Identities = 2020/2104 (96%), Gaps = 2/2104 (0%)
Strand=Plus/Plus
Query 39 CGCCAAGCGTGCGCAAGAGC-CATCATGTCCTACGCATCTCTCAGCGTCAAGGACCTGAC 97
|||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 CGCCAACCGTGCGC-AGAGCGAATCATGTCCTACGCATCTCTCAGCGTCAAGGACCTGAC 59
Query 98 CAGCCTTGTTTCAAGATCCGGAACCGGTTCGTCTTCTTCGCTCAAGCCTCCGGGTCAGAC 157
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CAGCCTTGTTTCACGATCCGGAACCGGTTCGTCTTCTTCGCTCAAGCCTCCGGGTCAGAC 119
Query 158 CCGCCCCGTCAAGGTCATCCCGCTTCAGCATCCTGACACCTCCAATGAAGCTCGTCCTCC 217
||| ||||| |||||||||||||| |||||||| |||||||||||||||||| |||||||
Sbjct 120 CCGACCCGTTAAGGTCATCCCGCTCCAGCATCCCGACACCTCCAATGAAGCTGGTCCTCC 179
Query 218 TTCGATTCCTTTCGACGATATCTTCTCCGGATGGACGGCGAAGATCAAGCGCATGAGGCT 277
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTCGATCCCTTTCGACGATATCTTCTCCGGATGGACGGCGAAGATCAAGCGCATGAGGCT 239
Query 278 CGTCGATTGGATTGATACTCTCTTTCCTTGTTTCCGATGGATTCGAACTTACCGATGGAG 337
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGTCGATTGGGTTGATACTCTTTTTCCTTGTTTCCGATGGATTCGAACTTACCGATGGAG 299
Query 338 CGAGTATTTTAAGCTCGATCTCATGGCTGGTATCACCGTCGGTATAATGCTTGTTCCCCA 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CGAGTATTTTAAGCTCGATCTCATGGCTGGTATCACCGTCGGTATAATGCTTGTTCCCCA 359
Query 398 GGCAATGTCGTATGCGAAACTAGCTGGCCTTCCACCAATTTACGGTCTATACTCTTCATT 457
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GGCAATGTCGTATGCAAAACTAGCTGGCCTTCCACCAATTTACGGTCTATACTCTTCATT 419
Query 458 TGTGCCGGTATTTGTCTATGCCATATTTGGCTCATCCCGTCAGCTTGCAATTGGACCTGT 517
|||||| | ||||| ||||||||||| ||||||||||| || |||||||||||||| ||
Sbjct 420 TGTGCCCATCTTTGTGTATGCCATATTCGGCTCATCCCGGCAACTTGCAATTGGACCCGT 479
Query 518 AGCATTGGTTTCTCTTCTCGTCTCTAATGCTTTGGGTGGAATCGCTGATACGAACGAGGA 577
||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 480 AGCATTGGTGTCTCTTCTCGTCTCTAATGCTTTGGGCGGAATCGCTGATACGAACCAGGA 539
Query 578 ATTACATATTGAATTGGCCATTTTGTTGGCGCTTTTAGTTGGAATCTTGGAGTGCATCAT 637
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 ATTACATATTGAACTGGCCATTTTGTTGGCGCTTTTGGTTGGAATCTTGGAGTGCATCAT 599
Query 638 GGGGCTCTTAAGGCTTGGATGGCTTATTCGTTTCATTAGTCACTCAGTCATATCTGGATT 697
||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 600 GGGGCTCTTGAGGCTTGGATGGCTTATTCGTTTCATAAGTCACTCGGTCATATCTGGATT 659
Query 698 TACAAGTGCTTCGGCCATTGTGATTGGGTTATCTCAAATAAAATATTTCCTGGGGTATAG 757
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 660 TACAAGTGCTTCGGCCATTGTAATTGGGTTATCTCAAGTAAAATATTTCCTGGGGTATAG 719
Query 758 CATTGCCCGGAGCAGCAAGATTGTGCCAATAGTAGAGAGCATAATAGCTGGAGCTGATAA 817
||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||
Sbjct 720 CATTGCCCGGAGCAGCAAGATCGTGCCACTAGTAGAGAGCATAATAGCAGGAGCTGATAA 779
Query 818 GTTTCAGTGGCCACCTTTCGTGATGGGATCTCTTATTCTGGTGATTCTTCAAGTGATGAA 877
||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||
Sbjct 780 GTTTCAGTGGCCACCTTTCTTGATGGGATCTCTCATTCTGGTGATCCTTCAAGTGATGAA 839
Query 878 ACATGTGGGAAAAGCCAAAAAGGAACTTCAGTTCTTACGAGCAGCAGCGCCACTCACCGG 937
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 840 GCATGTGGGAAAAGCAAAAAAGGAACTTCAGTTCTTACGAGCAGCAGCACCACTCACAGG 899
Query 938 GATTGTGCTCGGTACAACCATTGCAAAAGTGTTTCATCCGCCTTCCATCTCTCTGGTGGG 997
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 900 GATTGTGCTCGGTACAACCATTGCAAAAGTCTTTCATCCACCTTCCATCTCTCTGGTGGG 959
Query 998 AGAAATACCTCAGGGCCTTCCAACATTTTCTTTCCCAAGAAGTTTTGATCATGCAAAAAC 1057
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AGAAATACCTCAGGGCATTCCAACATTTTCTTTCCCAAGAAGTTTTGATCATGCAAAAAC 1019
Query 1058 GTTGCTTCCAACATCAGCTCTCATTACTGGTGTTGCCATCTTGGAATCTGTGGGAATTGC 1117
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1020 ATTGCTTCCAACATCAGCTCTCATTACTGGTGTTGCCATTTTGGAATCTGTGGGAATTGC 1079
Query 1118 CAAAGCGCTTGCGGCAAAAAACAGATATGAGTTGGATTCAAATTCAGAGTTGTTTGGTCT 1177
|||||| || || || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1080 CAAAGCACTCGCAGCGAAAAACAGATATGAGTTAGATTCAAATTCAGAGTTGTTTGGTCT 1139
Query 1178 TGGTGTTGCAAATATATTGGGGTCATTATTTTCTGCATACCCAGCTACAGGATCCTTTTC 1237
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1140 TGGTGTTGCAAATATATTGGGGTCATTATTTTCCGCATACCCAGCTACAGGATCCTTTTC 1199
Query 1238 TAGGTCAGCTGTGAATAATGAAAGTGAAGCTAAGACTGGCCTATCAGGGCTTATAACAGG 1297
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1200 TAGGTCAGCTGTGAATAATGAAAGTGAAGCTAAGACTGGCCTATCAGGACTTATAACAGG 1259
Query 1298 AATCATCATTGGATGTTCTCTACTGTTCTTGACACCGATGTTTAAATACATACCACAGTG 1357
|||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1260 AATCATCATTGGGTGTTCTCTACTATTCTTGACACCAATGTTTAAATACATACCACAGTG 1319
Query 1358 TGCTTTGGCAGCAATAGTGATATCTGCCGTTAGTGGCTTGGTGGACTATGACGAAGCTAT 1417
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1320 TGCTTTGGCAGCAATAGTGATATCTGCCGTGAGTGGCTTGGTGGACTATGACGAAGCTAT 1379
Query 1418 TTTCCTCTGGCGTGTGGACAAGAGGGATTTTTCGCTTTGGACCATCACTAGCACCATAAC 1477
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1380 TTTCCTATGGCGTGTGGACAAGAGGGATTTTACGCTTTGGACCATCACTAGCACCACGAC 1439
Query 1478 ATTGTTCTTCGGAATAGAGATCGGTGTCCTTGTTGGTGTTGGTTTTTCACTAGCATTCGT 1537
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1440 ATTGTTCTTCGGAATAGAGATCGGTGTCCTTGTTGGTGTTGGGTTTTCACTAGCATTTGT 1499
Query 1538 TATCCACGAGTCTGCAAACCCTCACATTGCTGTCTTGGGGCGGCTTCCAGGCACCACTGT 1597
|||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 1500 TATCCACGAGTCTGCAAATCCTCACATTGCTGTCTTGGGACGTCTTCCAGGCACCACTGT 1559
Query 1598 GTACAGAAACATAAAGCAGTATCCAGAGGCTTACACATACAACGGGATTGTGATAGTTCG 1657
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1560 ATACAGAAACATAAAGCAGTATCCAGAGGCTTATACATACAACGGGATTGTGATAGTTCG 1619
Query 1658 AATCGATTCTCCTATTTACTTTGCCAACATAAGTTACATCAAGGACAGACTACGAGAATA 1717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 AATCGATTCTCCTATTTACTTTGCCAACATAAGTTACATCAAGGACAGACTACGAGAATA 1679
Query 1718 TGAAGTAGCTGTTGACAAATACACAAACCGGGGACTGGAGGTGGATAGAATAAATTTTGT 1777
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 TGAAGTAGCTGTTGACAAGTACACAAACCGGGGACTGGAGGTGGATAGAATAAATTTTGT 1739
Query 1778 AATCCTGGAAATGTCTCCTGTTACACACATAGATTCGAGCGCAGTGGAAGCCTTGAAAGA 1837
|||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1740 AATCTTGGAAATGTCTCCGGTTACACACATAGATTCGAGCGCGGTGGAAGCCTTGAAAGA 1799
Query 1838 ACTGTATCAAGAGTATAAAACAAGGGATATTCAGCTAGCGATATCAAACCCGAACAAAGA 1897
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1800 ACTGTATCAAGAGTACAAAACAAGGGACATTCAGCTAGCGATATCAAACCCGAACAAAGA 1859
Query 1898 TGTTCACTTGACAATAGCAAGATCAGGAATGGTGGAGCTAGTTGGCAAGGAATGGTTCTT 1957
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1860 TGTTCACTTGACGATAGCAAGATCAGGAATGGTGGAGCTAGTTGGCAAAGAATGGTTCTT 1919
Query 1958 TGTGAGAGTACACGACGCCGTACAGGTGTGTCTACAATACGTACAGAGCTCTAACTTGGA 2017
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1920 TGTGAGAGTGCACGACGCCGTACAGGTGTGTCTACAATACGTACAGAGCTCTAACTTGGA 1979
Query 2018 GGACAAGCATTTAAGTTTTACGAGACGATATGGTGGGAGCAACAACAATTCATCCTCCTC 2077
|||||| | ||||||||||||||| | ||||||||| ||||||||||||||||||||||
Sbjct 1980 AGACAAGAAATTAAGTTTTACGAGAAGGTATGGTGGGGGCAACAACAATTCATCCTCCTC 2039
Query 2078 CAACGCGCTGTTGAAGGAGCCATTGTTATCAGTGGAGAAATAAAGGATATGTAATGTAAG 2137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2040 CAACGCGCTGTTGAAGGAGCCATTGTTATCAGTGGAGAAATAAAGGATATGTAATGTAAG 2099
Query 2138 TAAT 2141
||||
Sbjct 2100 TAAT 2103
> Ahg928972 jgi|Araly1|928972|scaffold_301429.1
Length=2078
Score = 1899 bits (1028), Expect = 0.0
Identities = 1543/1793 (86%), Gaps = 30/1793 (2%)
Strand=Plus/Plus
Query 222 ATTCCTTTCGACGATATCTTCTCCGGATGGACGGCGAAGATCAAGCGCATGAGGCTCGTC 281
||||| ||| | ||| |||||||| ||||||||| |||||||||||| |||| | || ||
Sbjct 145 ATTCCCTTCAATGATTTCTTCTCCCGATGGACGGTGAAGATCAAGCGTATGACGTTCTTC 204
Query 282 GATTGGATTGATACTC-TCTTTCCTTGTTTCCGATGGATTCGAACTTACCGATGG-AGCG 339
|| ||||||||||| | | |||||||| |||| |||||||| |||||||| ||| | |
Sbjct 205 GACTGGATTGATAC-CATATTTCCTTGCTTCCTTTGGATTCGGACTTACCGGTGGCATC- 262
Query 340 AGTATTTTAAGCTCGATCTCATGGCTGGTATCACCGTCGGTATAATGCTTGTTCCCCAGG 399
| || |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 263 AATACTTTAAGCTCGATCTTATGGCTGGTATCACCGTCGGTATCATGCTTGTTCCCCAGG 322
Query 400 CAATGTCGTATGCGAA-ACTAGCTGGCCTTCCACCAATTTACGGTCTATACTCTTCATTT 458
||||||||||||| || ||||||| |||| |||||| |||||||||||||| ||||||
Sbjct 323 CAATGTCGTATGC-AAGGTTAGCTGGGCTTCAACCAATATACGGTCTATACTCATCATTT 381
Query 459 GTGCCGGTATTTGTCTATGCCATATTT-GGCTCATCCCGTCAGCTTGCAATTGGACCTGT 517
||||| |||||||| |||||| | ||| || |||||||||||||||||| ||||||||||
Sbjct 382 GTGCCTGTATTTGTGTATGCCGT-TTTCGGTTCATCCCGTCAGCTTGCAGTTGGACCTGT 440
Query 518 AGCATTGGTTTCTCTTCTCGTCTCTAATGCTTTGGGTGGAATCGCTGATACGAAC-GAGG 576
|||||| ||||| ||||||||||| ||||| ||||||||||| | |||| | | | || |
Sbjct 441 AGCATTAGTTTCCCTTCTCGTCTCGAATGCCTTGGGTGGAATTGTTGAT-CCATCTGAAG 499
Query 577 AATTACATATTGA-ATTGGCCATTTTGTTGGCGCTTTTAGTTGGAATCTTGGAGTGCATC 635
| || | | ||| || |||||||||||||| ||| | ||||| || || |||||||||
Sbjct 500 AGCTATACACTGAGCTT-GCCATTTTGTTGGCTCTTCTGGTTGGGATATTTGAGTGCATC 558
Query 636 ATGGGGCTCTTAAGGCTTGGATGGCTTATTCGTTTCATTAGTCACTCAGTCATATCTGGA 695
|||||| |||| |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 559 ATGGGGTTCTTGAGGCTTGGATGGCTTATTCGTTTCATAAGTCACTCAGTCATTTCTGGA 618
Query 696 TTTACAAGTGCTTCGGCCATTGTGATTGGGTTATCTCAAATAAAATATTTCCTGGGGTAT 755
||||||| |||||| || |||||||||||||||| ||| | ||||| ||||| ||||||
Sbjct 619 TTTACAACTGCTTCAGCTGTTGTGATTGGGTTATCCCAATTGAAATACTTCCTAGGGTAT 678
Query 756 AGCATTGCCCGGAGCAGCAAGATTGTGCCAATAGTAGAGAGCATAATAGCTGGAGCTGAT 815
||| || | ||||||||||||||| |||| || | ||||||||||||||||||||||||
Sbjct 679 AGCGTTTCTCGGAGCAGCAAGATTATGCCCGTAATTGAGAGCATAATAGCTGGAGCTGAT 738
Query 816 AAGTTTCAGTGGCCACCTTTCGTGATGGGATCT-CTTATTCTGGTGATTCTTCAAGTGAT 874
||||| | |||||||||||| || |||||||| | ||||||||||| ||| ||| ||
Sbjct 739 CAGTTTAAATGGCCACCTTTCTTGTTGGGATCTAC-CATTCTGGTGATCCTTTTAGTAAT 797
Query 875 GAAACATGTGGGAAAAGCCAAA-AAGGAACTTCAGTTCTTACGAGCAGCAGCG-CCACTC 932
||| ||||||||||||| |||| ||||||||||||||| |||||||||||| | || |||
Sbjct 798 GAAGCATGTGGGAAAAG-CAAAGAAGGAACTTCAGTTCGTACGAGCAGCAG-GACCGCTC 855
Query 933 ACCGGGATTG-TGCTCGGTACAACCATTGCAAAAGTGTTTCATCCGCCTTCCATCTCTCT 991
|| ||| ||| | || ||||||| |||||||||||||| ||||| ||||||||| | ||
Sbjct 856 ACAGGGCTTGCT-CTTGGTACAATGATTGCAAAAGTGTTCCATCCACCTTCCATCACACT 914
Query 992 GGTGGGAGAAATACCTCAGGGCCTTCCAACA-TTTTCTTTCCCAAGAAGTTTTGATCATG 1050
||||||||| ||||||||||| ||||||| | ||||||||||||| ||||||||||||||
Sbjct 915 GGTGGGAGATATACCTCAGGGACTTCCAA-AGTTTTCTTTCCCAAAAAGTTTTGATCATG 973
Query 1051 CAAAAACGTTGCTTCCAACATCAGCTCTCATTACTGGTGTTGCCATCTTGGAATCTGTGG 1110
| ||| | ||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 974 CTAAATCACTGCTTCCAACATCGGCTCTCATTACTGGTGTTGCCATCTTGGAATCTGTAG 1033
Query 1111 GAATTGCCAAAGCGCTTGCGGCAAAAAACAGATATGAGTTGGATTCAAATTCAGAGTTGT 1170
| ||||| ||||| || || || ||||| ||||| || ||||||||||||||||||||||
Sbjct 1034 GTATTGCGAAAGCACTAGCCGCGAAAAATAGATACGAATTGGATTCAAATTCAGAGTTGT 1093
Query 1171 TTGGTCTTGGTGTTGCAAATATATTGGGGTCATTATTTTCTGCATACCCAGCTACAGGAT 1230
||||||||||||||||||||||||| |||||| |||| |||||||| ||| |||||||||
Sbjct 1094 TTGGTCTTGGTGTTGCAAATATATTTGGGTCACTATTCTCTGCATATCCAACTACAGGAT 1153
Query 1231 CCTTTTCTAGGTCAGCTGTGAATAA-TGAAAGTGAAGCTAAGACTGGCCTATCAGGGCTT 1289
|||||||||||||||| ||||| || |||||||||||| ||||||||||||||||| |||
Sbjct 1154 CCTTTTCTAGGTCAGCGGTGAA-AAGTGAAAGTGAAGCCAAGACTGGCCTATCAGGCCTT 1212
Query 1290 ATAACAGGAATCATCATTGGATGTTCTCTACTGTTCTTGACACCGATGTTTAAATACATA 1349
|||||||||| ||||||||||||||||||||||||||||| || |||||||||| |||
Sbjct 1213 GTAACAGGAATTATCATTGGATGTTCTCTACTGTTCTTGACCCCAATGTTTAAATTTATA 1272
Query 1350 CCACAGTGTGCTTTGGCAGCAATAGTGATATCTGCCGTTAGTGGCTTGGTGGACTATGAC 1409
|||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1273 CCACAGTGTGCTTTAGCAGCAATAGTGATCTCTGCTGTTAGTGGCTTGGTGGACTATGAA 1332
Query 1410 GAAGCTAT-TTTCCTCTGGCGTGTGGACAAGAGGGATTTTTCGCTTTGGACCATCACTAG 1468
| || || |||| | ||||||||||||||||| |||||| | |||||||||||||||||
Sbjct 1333 GGGGCAATCTTTC-TGTGGCGTGTGGACAAGAGAGATTTTACTCTTTGGACCATCACTAG 1391
Query 1469 CACCATAACATTGTTCTTCGGAATAGAGATCGGTGTCCTTGTTGGTGTTGGTTTTTCACT 1528
||| | || |||||||| ||||||||||| || ||||| |||||||||||||||||||
Sbjct 1392 CACTACCACTTTGTTCTTTGGAATAGAGATTGGGGTCCTCATTGGTGTTGGTTTTTCACT 1451
Query 1529 AGCATTCGTTATCCACGAGTCTGCAAACCCTCACATTGCTGTCTTGGGGCGGCTTCCAGG 1588
||||| || || |||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1452 TGCATTTGTAATACACGAGTCTGCAAACCCTCATATAGCTGTCTTGGGGCGTCTTCCAGG 1511
Query 1589 CACCACTGTGTACAGAAACATAAAGCAGTATCCAGAGGCTTACACATACAACGGGATTGT 1648
|||||||||||||||||||| ||||||||||||||||| ||||| |||| ||| |||||
Sbjct 1512 GACCACTGTGTACAGAAACATGAAGCAGTATCCAGAGGCATACACTTACAGCGGAATTGT 1571
Query 1649 GATAGTTCGAATCGATTCTCCTATTTACTTTGCCAACATAAGTTACATCAAGGACAGACT 1708
||| |||||||| ||| |||| ||||| |||||||||||||| |||||||||||||| ||
Sbjct 1572 GATTGTTCGAATTGATGCTCCCATTTATTTTGCCAACATAAGCTACATCAAGGACAGGCT 1631
Query 1709 ACGAGAATATGAAGTAGCTGTTGACAAATACACAAACCGGGGACTGGAGGTGGATAGAAT 1768
||||||||||||||||||| | |||||| |||||| | ||||| || |||| || ||
Sbjct 1632 ACGAGAATATGAAGTAGCTATCGACAAACACACAAGCAAGGGACCAGATATGGAGAGGAT 1691
Query 1769 AAATTTTGTAATCCTGGAAATGTCTCCTGTTACACACATAGATTCGAGCGCAGTGGAAGC 1828
| || || |||||||||||||||||||| ||| |||| || || |||||||| |||||
Sbjct 1692 CTACTTCGTTATCCTGGAAATGTCTCCTGTCACATACATCGACTCAAGCGCAGTAGAAGC 1751
Query 1829 CTTGAAAGAACTGTATCAAG-AGTATAAAACAAGGGATATTCAGCTAGCGATATCAAACC 1887
||| ||||| |||| | || ||||||||||||||| |||||||||||||| || ||||
Sbjct 1752 CTTAAAAGATTTGTA-CGAGGAGTATAAAACAAGGGGGATTCAGCTAGCGATCTCGAACC 1810
Query 1888 CGAACAAAGATGTTCACTTGACAATAGCAAGATCAGGAATGGTGGAGCT-AGTTGGCAAG 1946
| |||||||| |||| ||| || |||||||| |||| || ||||| || | |||||||
Sbjct 1811 CAAACAAAGAGGTTCTCTTAACTCTAGCAAGAGCAGGCATTGTGGAACTTA-TTGGCAAA 1869
Query 1947 GAATGGTTCTTTGTGAGAGTACACGACGCCGTACAGGTGTGTCTACAATACGT 1999
||||||||||| |||||||||||||| || || || || ||| | || |||||
Sbjct 1870 GAATGGTTCTTCGTGAGAGTACACGATGCAGTCCAAGTTTGTGTTCATTACGT 1922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84941246350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5