BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13560.1
Length=3118
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940821 jgi|Araly1|940821|scaffold_601365.1 3421 0.0
> Ahg940821 jgi|Araly1|940821|scaffold_601365.1
Length=2080
Score = 3421 bits (1852), Expect = 0.0
Identities = 2008/2084 (96%), Gaps = 8/2084 (0%)
Strand=Plus/Plus
Query 114 ATAAGATCG-CTGAG---AATATGTCGTGGCTGCGAACGGCCGTGAATAAGGCTGTGGAG 169
||||||||| | ||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATAAGATCGAC-GAGCATAATATGTCGTGGCTGCGAACGGCCGTGAATAAGGCGGTGGAG 59
Query 170 GTCGGAAACCGCAAAAACATCACACGAACCGTCAAAAACTATGCCGACTCCGTCGTCCAG 229
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 60 GTCGGAAACCGCAAAAACATCACACGAACCGTCAAGAACTATGCCGACTCCGTCGTCCAG 119
Query 230 CACGCTGGCCAAGCCGTCGCTGAAGGAGCCAAATTGTTCCAAGACCGCATTGGTGTTGGG 289
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 120 CAGGCTGGCCAAGCCGTCGCTGAAGGAGCCAAATTGTTTCAAGACCGCATTGGTGTCGGG 179
Query 290 GCTTATAAGAGTGTTCATCAGACAATTCAGAGATTGGAAGAAGCTGCAGTCTCATATAGA 349
|| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 180 GCCTATAAGAGTGTTAATCAGACGATTCAGAGATTGGAAGAAGCTGCAGTCTCATATAGA 239
Query 350 GGTCAAGAAAGGGCATTGCTGATTACTAGATGGCTAAGTGTGCTTAAGGAGATTGATAGA 409
||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 240 GGTCATGAAAGGGCATTGCTGATTTCTAGATGGCTAAATGTGCTTAAGGAGATTGATAGA 299
Query 410 GCTACTGACAGTTCTCTAAAGGATAAACAATTGAGTTCAGAGGAACAACTTGCTTCTGAT 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GCTACTGACAGTTCTCTAAAGGATAAACAATTGAGTTCAGAGGAACAACTTGCTTCTGAT 359
Query 470 GAAGCAAAGAAACGTGAATGGGTTTTGTATTACGATCCAGATATAGGCGGTGAGCCACTT 529
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 360 GAAGCAAAGAAACGTGAATGGGTGTTGTATTACGATCCAGATATAGGCGGTGAGCCACTT 419
Query 530 AACTTCCGTGATGTTTTTCTGCAAAGTCAAGCTCTGGAGGGGATCGTTCTGTCCATGATT 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AACTTCCGTGATGTTTTTCTGCAAAGTCAAGCTCTGGAGGGGATCGTTCTGTCCATGATT 479
Query 590 ATTGAACCACCACATGACGAAGAAATCACGCTACTCCTGGAGATGTTTGGCCTTTGTTTG 649
|||||||||||||||||||||||||| || |||||||||||||||||||| |||||| ||
Sbjct 480 ATTGAACCACCACATGACGAAGAAATTACTCTACTCCTGGAGATGTTTGGGCTTTGTCTG 539
Query 650 AATGGAGGAAAGGAAGTTCATGATGCCATAGTTAGCAGTATGCAGGATCTTGCTACAGTC 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AATGGAGGAAAGGAAGTTCATGATGCCATAGTTAGCAGTATGCAGGATCTTGCTACAGTC 599
Query 710 TTTTCAAGTTACAAGGATGAAGTTTTGGTTAAGCAGGACGAATTGCTTCAGTTTGCCCAA 769
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTTTCGAGTTACAAGGATGAAGTTTTGGTTAAGCAGGACGAATTGCTTCAGTTTGCCCAA 659
Query 770 AATGCCATCACAGGGTTGAAGATTAATGCTGAAATGCTGAGAATTGATGCTGAAGCTTCT 829
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AATGCTATCACAGGGTTGAAGATTAATGCTGAAATGCTGAGAATTGATGCTGAAGCTTCT 719
Query 830 GATTTGAGAAAGAAACTCGAAAAGATGAATGCCTCTCAAATTCCACAGGAGAGTGAAGAC 889
||| |||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 720 GATCTGAGGAAGAAACTCGAGAAGATGAATGCCTCTCAAATTCCACAGGAGAGTGGAGAC 779
Query 890 AAGGAACATAAAGAGACTCCTTTAACAATAGAGGCTTTCAAAGAAACACTTGCAAAGATT 949
||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 780 AAGGAACTTAAAGAGGCTCCTTTAACAATTGAGGCTTTCAAAGAAACACTTGCAAAGATT 839
Query 950 CGTCTTTGCTCCAGATTAGAAGGTCTTCTAATTAGAAAGAGACAACTAAGCAATGGTGAC 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 840 CGTCTTTGCTCCAGATTAGAAGGTCTTCTAATTAGAAAGAGACAACTAAGCAACGGTGAT 899
Query 1010 TCACCAGATATACATGCTCAGAAAGTCGACAAGCTCAGGGTGTTATTAGAATCTTTAGCA 1069
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TCGCCAGATATACATGCTCAGAAAGTCGACAAGCTCAGGGTGTTATTAGAATCTTTAGCA 959
Query 1070 AATTCAACTTCCAAAGCCGAGAAACGAATATCAGAGAACAGACTTCAGAAAGAGGAAGCA 1129
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 960 AATTCAACTTCCAAAGCCGAGAAACGAATATCAGAAAACAGACTTCAGAAAGAGGAGGCA 1019
Query 1130 CTAAAAGCTCGTGTGGTGAAAGCAAATGAAACCGGTGAAAAGGAAAAGGAGTTGGGTGCC 1189
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1020 CTAAAAGCTCGTGTGGTAAAAGCAAATGAAACCGGTGAAAAGGAAAAGGAATTGGGTGCA 1079
Query 1190 GAAATTGCACAGCTTGAGAAACAAAGAGATGAGCTGGAAGCCGATCTGAAGAGGGTAAAT 1249
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1080 GAAATTGCACAGCTTGAGAAACAAAGAGAAGAGCTGGAAGCCGAACTGAAGAGGGTAAAT 1139
Query 1250 CTATCGTTAGCTGCTGCTCAAGCTCGGTTTCGTAATGCGACAGAGGAGAGGGATCAATTT 1309
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1140 ATATCATTAGCTGCTGCTCAAGCTCGGTTCCGTAATGCGACAGAGGAGAGGGATCAATTT 1199
Query 1310 GGTGAAGCCAACAATCAGATAATCGCTCACCTGAAAACGAAGGATGATGACCTGTCCAAA 1369
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1200 GGTGAAGCCAACAATCAGATAATCGCTCACCTGAAAACAAAGGAGGATGACCTGTCCAAA 1259
Query 1370 TCAGTTGTAGCTTGTAAGAAAGAAGCAGAAGTTATCAAGACGTGGATTAATTTTCTTGAG 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TCAGTTGTAGCTTGTAAGAAAGAAGCAGAAGTTATCAAGACGTGGATTAATTTTCTTGAG 1319
Query 1430 GATACATGGCTTCTTCAGTGCTCACATATCGAAACGAAGGATAAGCAGACTTTGGACGAA 1489
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1320 GATACATGGCTTCTTCAATGCTCATATATCGAAACGAAGGATAAGCAGACTTTGGACGAA 1379
Query 1490 TTGGAGAAGCATGAAGATTACTTCTCGGATGTGGCCTTGAATATACTCTCTGTGTACAAG 1549
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1380 TTGGAGAAGCATGAGGATTACTTCTCGGATGTGGCCTTTAATATACTCTCTGTGTACAAG 1439
Query 1550 AAGGAGGTGGCACCTTTAATAAGTCGTATAGAAAATTATGTGGAAAATCTGAAGAATCTG 1609
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 AAGGAGGTGGCACCGTTAATAAGTCGTATAGAAAATTATGTGGAAAATCTGAAGAATCTG 1499
Query 1610 GGTCCTGGGTCGGAGAAGCCACCAAATGCAGATCAGGGAGACAATCAGGTATCAAACCCG 1669
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1500 GGTCCTGGGTCGGAGAAGCCACCAAACGCAGATCAGGGAGACAATCAGGTATCAAACCCG 1559
Query 1670 AGGAAAATTCTGGAGGAGGAGTATATAGACTATGAGACCAAGATCATTACCACATTCAGC 1729
||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1560 AGGAAAATTCTGGAGCAGGAGTATATAGACTATGAGACCAAGATTATTACCACCTTCAGC 1619
Query 1730 ATTGTGGACAACGTGAAAGAGCAATTCCAGGTTCTCCAAAGCAAACTGGATAAAAAGGAC 1789
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 ATTGTGGACAACATGAAAGAGCAATTCCAGGTTCTCCAAAGCAAACTGGATAAAAAGGAC 1679
Query 1790 GACCGGCGTGTGAAAGAGCTGTTTGATGACATGGAGAAAATGAGGCAGCAATTTGAATCC 1849
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 GACCGGCGTGTGAAAGAGCTGTTTGATGACATGGAGAAAATGAGGCAGCAATTTGAATCG 1739
Query 1850 ATAGCGAGGCCAACGTTAGAGATAGAGATTCCATCACCTAGAAGCAGTGTTACGTCCCCT 1909
||||||||||| | ||||||||||||||||||||| |||| |||||||||||| || |||
Sbjct 1740 ATAGCGAGGCCGATGTTAGAGATAGAGATTCCATCGCCTAAAAGCAGTGTTACATCACCT 1799
Query 1910 AAAAGCAGTGCTACATCACCCAAATCTCCCAAGCCTAGCAGTAGTAGCATGAATGCTTCA 1969
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||
Sbjct 1800 AAAAGCAGTGCTACATCACCCAAATCTCCCAAGCCCAGCAGTAGTAGCATGGATGATTCA 1859
Query 1970 ACTGAATCTACTCAGACCCAAAAGCCAGAGCTGAGCAATTCTCCTCAGGCACCCAATCCT 2029
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1860 ACTGAATCTACTCAGACCCAAAAGCCGGAGCTGAGCAATCCTCCTCAGGCACCCAATCCT 1919
Query 2030 GCAGCTGGTTCCAGTCAAGAGTTTAACCCTGAAGCCGAACTAGCCGAGCTGGAATCTGAA 2089
|||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1920 ACAGCTGGTTCCAGTCAGGAGTTTAACCCTGAAGCTGAACTAGCCGAGCTAGAATCTGAA 1979
Query 2090 TTTGGTAAGGTGGCTCGTGATTACTCTGCAGATGAGGTTGATGGATGGGAATTCGATGAA 2149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1980 TTTGGTAAGGTGGCTCGTGATTACTCTGCAGATGAGGTTGATGGATGGGAATTCGATGAA 2039
Query 2150 CTGGAGAAAGAACTGCAGTAGTATGATCCATCACACGCCTGCCT 2193
|| |||||||||||||||||||| ||| || ||||||||||||
Sbjct 2040 CTTGAGAAAGAACTGCAGTAGTA--ATC-ATGACACGCCTGCCT 2080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117775037540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5