BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13570.2
Length=1667
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488176 jgi|Araly1|488176|fgenesh2_kg.6__1310__AT5G13570.1 1234 0.0
> Ahg488176 jgi|Araly1|488176|fgenesh2_kg.6__1310__AT5G13570.1
Length=1628
Score = 1234 bits (668), Expect = 0.0
Identities = 870/958 (91%), Gaps = 52/958 (5%)
Strand=Plus/Plus
Query 733 AGGTCTTAGAGGAAACTGGATTTGATGTCTCAAAGCTACTCAAG-AGAGAAGAATATATA 791
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 700 AGGTCTTAGAGGAAACTGGATTTGATGTCTCAAAGCTACTCAAGAAG-GAAGAATATATA 758
Query 792 GAGTTTGTTTTCAGGCAGCAAAGAGTACGACTTTACATTGTTGCTGGGGTGACAGAAGAT 851
|||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||| |||
Sbjct 759 GAGTTTGTTTTCAGGCAGCAAAGAGTACGACTATACATAGTTGCTGGGGTGAAAGAGGAT 818
Query 852 ACAGTTTTTGCACCACTTACAAAGAAGGAAATCAGTGAAATCACATGGCATCGGCTTGAT 911
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||
Sbjct 819 ACAGTTTTTGCACCACTCACAAAGAAGGAAATCAGTGAAATCGCATGGCATCGGCTTTAT 878
Query 912 CATCTTCAGCCAGCAAGTAATGAGGTGATAACTCATGGAGTTTCTGGTCTCAAATTGTAC 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 CATCTTCAGCCAGCAAGTAATGAGGTGATAACTCATGGAGTTTCTGGTCTCAAATTGTAC 938
Query 972 ATGGTGGCACC-TTTCCTTTCGTCATTGAAGTCGTGGATATTAAAGCATCCTTCACCTGT 1030
||||||||||| |||| ||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 939 ATGGTGGCACCATTTC-TTTCGTCGTTGAAGTCATGGATATTAAAGCATCCTTCACCTGT 997
Query 1031 AGCACGGAGACCTAACAAGCCCCTTAAAGCACTCTGCGTGTGGAATGCAAGGACTAGTGT 1090
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 998 AGCACGGAGACATAACAAGCCCCTTAAAGCACTCTGCGTGTGGAATGCAAGGACTAGTCT 1057
Query 1091 TGGAGGGAACGGGACAGCAACAGTGGAAAGCCAAAATAGAAAGTCTGAACTCAGGACAAC 1150
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1058 TGGAGGGAACGGGACAGCAACAGTGGAAAGCCACAATAGAAAGCCTGAACTCAGGACAAC 1117
Query 1151 AACAATGGAAAGCAACAGTAGAAAGCCTGAACTCAAGAG-AACAACAATGGAAAGCCACA 1209
|||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 1118 CACAATGGAAAGCAACAATAGAAAGCCTGAACTCA-GAACAACAACAATGGAAAGCCACA 1176
Query 1210 GTACAAAGCCTGAACTCAGGAAAGGAACAATGGAAAGCCACAATACAA--C---A----G 1260
|||||||||||||| ||||||| ||||||||||||||||| ||||| | | |
Sbjct 1177 ATACAAAGCCTGAACCCAGGAAAACAACAATGGAAAGCCACAGTACAAAGCCTGAACTCG 1236
Query 1261 ---CA--A-CAGTAGAAAGCCACAATACAAAGCCTGTAGTCGACCATTCTCAGGACATAA 1314
|| | ||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1237 GGACAGCAACAGTAGAAAGCCACAATACAAAGCCTGAAGTCGACCATCCTCAGGACATAG 1296
Query 1315 AACCTGGTGGCAGTTTCATAAACTTCAAGTTCAACCAGTCAGTTATCTTACAGGCGTTGG 1374
|||||| | |||||||||||||||||||||| || ||||||||||||||| ||||
Sbjct 1297 AACCTGCAGACAGTTTCATAAACTTCAAGTTCGACAAGTCAGTTATCTTACGGGCG---- 1352
Query 1375 AATCTGGTAATTCAGCTTGACTGGTCAGTTTGTCACATATCGGTTGGATTGGTGTTGGGA 1434
| | || ||| || | | || | | ||| |||||||||||||||||||
Sbjct 1353 A-T--GG-AAT--AG---G--T---CA-T-----A--TATGGGTTGGATTGGTGTTGGGA 1390
Query 1435 GTAATGATGCGGTTGGATTGGTGGGTTTGTCTATAGCAAAACCGTTGGATATGTTCATAC 1494
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 GTTATGATGCGGTTGGATTGGTGGGTTTGTCTATAGCAAAACCGTTGGATATGTTCATAC 1450
Query 1495 ACGCTGGTAGCTTTCTATTTCTTTGCCATTTGGTTTATATACCTCTCGTTTCTTCTAGAA 1554
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1451 ACGCTGGTACCTTTCTATTTCTTTGCCATTTGGTTTATATACCTCTCGTTTGTTCTAGAA 1510
Query 1555 TGAAAGGGTTGTTGTAAATGATG-TT---AGTAGGGAAGTGGTGAATCCTTTGGATCATG 1610
|||||||||||||||| |||||| || |||||||||||||||||||||||||||||||
Sbjct 1511 TGAAAGGGTTGTTGTACATGATGGTTGTTAGTAGGGAAGTGGTGAATCCTTTGGATCATG 1570
Query 1611 GCTTTAGATGACAATG-TTACGACCAGCTATAAAGGTTAAAAGAGTTTCTTATCCGAG 1667
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1571 GCTTTAGATGACAATGGTTGCGACCAGCTATAAAGGTTAAAAGAGTTTCTTATCCGAG 1628
Score = 1098 bits (594), Expect = 0.0
Identities = 675/712 (95%), Gaps = 13/712 (2%)
Strand=Plus/Plus
Query 1 GCCCACCTTTTAGATACACACAATCGTCGCACTCTCAGATTCTTCTCCGGAGCGATCAGA 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 GCCCACCTTTTAGATACACACAATCGTCGCACTCCCAGATTCTTCTCCGGAGCGATCAGA 60
Query 61 TTTCACCGACGACGGTTGTTTTTGCCTCCTCTTTCAATCAGAGGAAGCCAAAGCTTAGAG 120
||||||||||||||||| ||||||||||||||||||| ||||||| | ||||||||||
Sbjct 61 TTTCACCGACGACGGTT-CCTTTGCCTCCTCTTTCAATCGGAGGAAGACTAAGCTTAGAG 119
Query 121 CAACAGTTGTAAATCTATATATagagagggagagagagag--agagagCTCCTCTCGTCC 178
|||||||| || |||||| ||||||||||||||||||||| |||||||||||||| |||
Sbjct 120 CAACAGTTATATATCTATCTATAGAGAGGGAGAGAGAGAGATAGAGAGCTCCTCTCATCC 179
Query 179 AGTATTAGGGTTTTAAAGGC---AAG-A---ACTACTAGAACAAGAGAAGGTACaaaaaa 231
|||||||||||||||||||| ||| | |||||||||||||||| ||| | | ||||
Sbjct 180 AGTATTAGGGTTTTAAAGGCAAGAAGAATTCACTACTAGAACAAGAGGAGG-A-ATAAAA 237
Query 232 aaaTGTCGGGCCTCCATCGATCATCAAGTTCATCGAAGAACATCGGAAATTGCCTTCCCT 291
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 238 AAATGTCGGGTCTCCATCGATCATCAAGTTCATCGAAGAACATCGGAAATTGCCTCCCCT 297
Query 292 CCAAAGAACTCCTTGATGATCTTTGCAGTCGATTTGTTTTGAATGTCCCTGAAGAAGATC 351
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CCAAAGAACTTCTTGATGATCTTTGCAGTCGATTTGTTTTGAATGTCCCTGAAGAAGATC 357
Query 352 AACAGTCATTCGAGAGAATTTTGTTTCTGGTGGAGTATGCTTATTGGTACTATGAAGATA 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AACAGTCATTCGAGAGAATTTTGTTTCTGGTGGAGTATGCTTATTGGTACTATGAAGATA 417
Query 412 ATGCTGTAGAGAATGATCCAAAGCTTAAGTCCCTGTCTTTGAAAGAGTTTACTTCGCTCT 471
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 418 ATGCTGTAGAGAATGATCCCAAGCTTAAGTCCCTGTCCTTGAAAGAGTTTACTTCGCTCT 477
Query 472 TATTCAACAGCTGTGATGTGTTGAGACCTTATGTTACTCACATTGATGATATCTTTAAAG 531
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 478 TATTCAACAGCTGTGATGTGTTGAGACCTTATGTTACTCACATTGATGACATATTTAAAG 537
Query 532 ACTTCACTTCTTACAAGTGTCGAGTTCCAGTCACTGGGGCAATTATCCTGGATGAGACAT 591
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 538 ACTTCACTTCTTACAAGTGTCGAGTTCCCGTCACTGGGGCAATCATCCTGGATGAGACAT 597
Query 592 ATGAAAGGTGCCTGTTGGTGAAGGGATGGAAAGGATCGAGCTGGAGCTTTCCCCGCGGAA 651
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 598 ATGAAAGGTGCCTGTTGGTGAAGGGATGGAAAGGATCGAGCTGGAGCTTTCCCCGCGGGA 657
Query 652 AAAAGAGCAAGGATGAAGAAGACCATGCTTGTGCCATACGTGAGCTCTCTAG 703
| |||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 658 AGAAGAGCAAGGATGAAGAAGACCATGCTTGTGCCATACGTGAGGTCT-TAG 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62506092045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5