BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13580.1
Length=2510
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488177 jgi|Araly1|488177|fgenesh2_kg.6__1311__AT5G13580.1 3808 0.0
Ahg485932 jgi|Araly1|485932|fgenesh2_kg.5__1924__AT3G55110.1 409 6e-113
Ahg482955 jgi|Araly1|482955|fgenesh2_kg.4__2015__AT2G39350.1 381 1e-104
> Ahg488177 jgi|Araly1|488177|fgenesh2_kg.6__1311__AT5G13580.1
Length=2487
Score = 3808 bits (2062), Expect = 0.0
Identities = 2366/2511 (94%), Gaps = 28/2511 (1%)
Strand=Plus/Plus
Query 4 TGTTAAACAGCCCAACCACATTGAGAATTTTATCTATAAATAGAATTAGAAATTAAATCC 63
|||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 1 TGTTAATCAGCCCAACCACATTGAGAA-TTTATCTATAAATAGAAATAGAAGTTAAATCG 59
Query 64 TTGGTTAAACCCAT-AACTCTTCTTTCCTCTTTTCTTCTCCGGCTAACGGTAGTTTTGAC 122
|||||||||| | | ||| | ||||||||||||||||||| |||||| | | | |
Sbjct 60 TTGGTTAAACACTTAAAC-C-CCTTTCCTCTTTTCTTCTCCTGCTAAC-G--G---T-A- 109
Query 123 GCCGTTAGTTTTTCCTCCGTCTATTGATTTTTCCCGCTTCACAATCGCAACAAACCCAAA 182
||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 ---GTT--TTTCT-CTCCGTCTATTGATTTTTCCCGCTTCACAATCGCAACAAACCCAAA 163
Query 183 GAAGAATGTCTCGTGTGGTCGCAGCGGACGACAATATGGCGTTGCCGTTCTTCTCGCCGG 242
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 164 GAAGAATGTCTCGTGTGGTCGCAGCAGACGACAATATGGCGTTGCCGCTCTTCTCGCCGG 223
Query 243 AGTTTGGCAATGTCTCAGGCGCGTCGTCTTCTCCAACAACGTTCGCACAGCTCTTGCAAA 302
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 224 AGTTTGGCAATGTCTCAGGCGCCTCGTCTTCTCCAACAACGTTCGCACAGCTCTTGCAAA 283
Query 303 ACGTCGACGACTCCACGCGTCGTAGTCACCACCAGCATCACGTTGATGTGGATCTCGCCT 362
||||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 284 ACGTCGACGACACGACGCGTCGTAGTCATGACCAGCATCACGTTGATGTCGATCTCGCCT 343
Query 363 CGCCGGACCAATCCGTACCGTTCGTTCTCTCGTTCACTGATCTCACTTACAGCGTCAAAG 422
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 344 CGCCCGACCAATCCGTACCGTTCGTTCTCTCGTTCACCGATCTCACTTACAGCGTCAAAG 403
Query 423 TTCGCCGGAAGTTCACATGGAGACGCAGTGTTTCTTCAGATCCTGGAGCTCCGTCTGAGG 482
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||
Sbjct 404 TTCGCCGGAAGTTCACATGGAGGCGCAGCGTTTCTTCAGATCCCGGAGCTCCGTCGGAGG 463
Query 483 GGATCTTCTCTTCCAAGACGAAGACGCTCCTCAACGGAATCACCGGAGAAGCTAGAGACG 542
|||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 464 GGATCTTCTCTTCCAAAACGAAGACGCTCCTCAACGGAATCTCCGGAGAGGCTAGAGACG 523
Query 543 GAGAGATACTAGCTGTGCTCGGAGCAAGTGGCTCTGGAAAATCGACGCTGATCGATGCGT 602
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 524 GAGAGATACTAGCTGTGCTCGGAGCAAGTGGCTCCGGAAAATCGACACTGATCGATGCAT 583
Query 603 TAGCGAATCGAATCGCTAAAGGAAGCTTGAAAGGAAATGTAACTCTAAACGGAGAAGTTC 662
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 584 TAGCTAATCGAATCGCTAAAGGAAGCTTGAAAGGAAACGTAACTCTAAACGGAGAAGTTC 643
Query 663 TCAATTCGAAAATGCAGAAAGCGATCTCAGCTTATGTGATGCAAGACGATCTTCTTTTTC 722
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 644 TCAATTCGAAAATGCAGAAAGCCATCTCAGCTTATGTGATGCAAGACGATCTTCTTTTTC 703
Query 723 CGATGCTTACAGTTGAAGAAACCTTAATGTTCGCTGCCGAGTTTCGTCTCCCGCGAAGCC 782
||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 704 CGATGCTTACAGTTGAAGAAACCTTAATGTTTGCCGCCGAGTTTCGTCTTCCGCGAAGCC 763
Query 783 TTTCGAAATCAAAGAAGTCTCTCCGTGTCCAAGCCTTGATTGATCAGTTAGGACTTAGAA 842
||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||
Sbjct 764 TTTCGAAATCAAAGAAGAGTCTCCGTGTCCAAGCTTTGATTGATCAATTAGGACTTAGAA 823
Query 843 ACGCGGCGAATACGGTGATCGGAGATGAAGGACACCGTGGAATCTCTGGAGGAGAGCGAC 902
|||| || ||||| ||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 824 ACGCAGCAAATACCGTGATCGGAGATGAAGGCCACCGTGGAATCTCTGGAGGAGAGAGGC 883
Query 903 GGCGAGTTTCAATCGGGATCGATATCATCCACGATCCGATTCTGCTTTTCCTCGATGAAC 962
||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 884 GGCGAGTTTCAATTGGAATTGATATCATCCATGATCCGATTCTGCTTTTCCTCGATGAAC 943
Query 963 CAACTTCGGGTCTGGACTCTACAAGTGCTCTAAGTGTTATTAAGGTTCTTAAACGAATCG 1022
|||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 944 CAACCTCGGGTTTGGACTCTACAAGTGCTCTAAGTGTCATTAAGGTTCTTAAACGAATCG 1003
Query 1023 CTCAGAGTGGAAGTATGGTGATCATGACTCTTCATCAACCTAGTTACCGTCTTCTTCGAT 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 CTCAGAGTGGAAGTATGGTGATCATGACTCTTCATCAACCTAGTTACCGTCTTCTTCGAT 1063
Query 1083 TGCTTGATCGTCTTCTCTTCTTGTCCCGTGGCCAAACTGTCTTCAGCGGATCGCCTGCGA 1142
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1064 TGCTTGATCGTCTTCTCTTCTTGTCCCGTGGCCAAACTGTCTTCAGCGGATCGCCTGCCA 1123
Query 1143 TGCTACCGCGCTTCTTCGCAGAGTTTGGCCATCCAATTCCTGAACATGAGAACCGCACCG 1202
||||||| |||||||| || ||||||||||| |||||||| ||||| || ||||||||||
Sbjct 1124 TGCTACCTCGCTTCTTTGCTGAGTTTGGCCACCCAATTCCCGAACACGAAAACCGCACCG 1183
Query 1203 AGTTCGCTTTGGATTTGATACGTGAGCTGGAAGGATCAGCTGGTGGAACAAGAAGTTTAG 1262
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 AGTTCGCTTTGGATTTGATCCGTGAGCTGGAAGGATCAGCTGGTGGAACAAGAAGTTTAG 1243
Query 1263 TTGAATTCAACAAAGGGTTTAGACAGAGGAAAGCAGAGCCAAGAAGTCAGACTGGCTTGT 1322
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1244 TTGAATTCAACAAAGGTTTTAGACAGAGGAAAGCAGAGCCAAGAACTCAGACTGGCCTGT 1303
Query 1323 CCTTAAAAGAAGCCATCAGCGCAAGTATCTCTAAAGGCAAGCTCGTCTCTGGAGCGACCA 1382
||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||| || |
Sbjct 1304 CCTTAAAAGAAGCCATCAGTGCAAGCATCTCCAAAGGGAAGCTCGTCTCTGGAGCAACGA 1363
Query 1383 CAACAACTCATAGCTC-TGGCTCGAGCCCTGTTTCCACTATTCCAAC-TTTCGCGAACCC 1440
|||| || | | ||| ||||||||||||||||||||| ||||| || ||| || |||||
Sbjct 1364 CAACTAC--A-A-CTCCTGGCTCGAGCCCTGTTTCCACCATTCCTACATTT-GCAAACCC 1418
Query 1441 GTTTTGGGTCGAACTCGCGGTTCTAGCCAAACGGTCCATGACTAATTCTCGCAGACAGCC 1500
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1419 CTTTTGGGTCGAACTCGCGGTTCTAGCCAAACGGTCCATGACTAATTCTCGCAGACAGCC 1478
Query 1501 TGAACTATTCGGGATACGCCTAGGAGCTGTTTTAGTCACTGGATTCATCTTAGCCACTAT 1560
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1479 TGAACTATTCGGAATACGCCTAGGAGCTGTTTTAGTCACTGGATTCATCTTAGCCACAAT 1538
Query 1561 GTTTTGGCAGCTAGATAACTCCCCTAAAGGAGTCCAAGAACGTCTTGGATGCTTCGCTTT 1620
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1539 GTTTTGGCAGCTAGATAATTCCCCCAAAGGAGTCCAAGAACGTCTTGGATGCTTCGCCTT 1598
Query 1621 TGCAATGTCCACAACGTTCTACACTTGCGCAGATGCTCTCCCTGTTTTCCTCCAAGAACG 1680
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1599 TGCAATGTCCACAACGTTCTACACTTGCGCAGATGCCCTCCCCGTTTTCCTCCAAGAACG 1658
Query 1681 TTTCATTTTCATGAGAGAAACTGCTTACAACGCTTACCGAAGATCCTCCTATGTACTATC 1740
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1659 TTTCATTTTCATGAGAGAAACCGCTTACAACGCTTACCGAAGATCCTCCTATGTACTCTC 1718
Query 1741 TCACTCTCTTGTTGCCCTCCCTTCCTTGATCATCCTCTCGCTTGCTTTTGCAGCGATCAC 1800
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1719 TCACTCACTTGTTGCCCTCCCTTCCTTGATCATCCTCTCGCTTGCTTTCGCAGCAATCAC 1778
Query 1801 ATTTTGGGGTGTGGGTTTAGATGGAGGTCTTATGGGTTTCCTCTTCTACTTCCTAGTAAT 1860
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1779 GTTTTGGGGTGTGGGCTTAGATGGAGGTCTCATGGGTTTCCTCTTCTACTTCCTAGTAAT 1838
Query 1861 CTTAGCCTCTTTCTGGGCAGGAAGCTCATTCGTCACCTTCTTATCAGGCGTTGTCCCACA 1920
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1839 CTTAGCCTCTTTCTGGGCTGGAAGCTCATTTGTCACCTTCTTATCAGGCGTTGTCCCACA 1898
Query 1921 CGTTATGCTCGGTTACACCATTGTTGTAGCCATTTTAGCCTATTTCTTGCTTTTCAGTGG 1980
|| |||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 1899 TGTCATGCTCGGTTACACCATTGTGGTAGCCATCTTAGCCTACTTCTTGCTTTTCAGTGG 1958
Query 1981 ATTCTTCATCAACCGAGATCGAATCCCTGGCTACTGGATCTGGTTCCATTACATTTCCTT 2040
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1959 ATTCTTCATCAACCGAGATCGAATCCCTGGCTACTGGATCTGGTTCCATTACATATCTTT 2018
Query 2041 AGTCAAGTATCCTTATGAGGCTGTGCTCCTAAACGAATTCGGTGACCCAACAAAGTGTTT 2100
|||||| || ||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 2019 AGTCAAATACCCTTACGAAGCTGTGCTACTAAACGAATTCGGTGACCCAACAAAGTGTTT 2078
Query 2101 CGTCAGAGGAGTTCAGATATTCGACAACACACCTCTGGTCGCGGTGCCTCAGGGGATGAA 2160
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2079 CGTCAGAGGAGTTCAGATATTCGACAACACACCTCTCGTCGCGGTGCCTCAGGGGATGAA 2138
Query 2161 AGTTAGGCTTCTAGCAACTATGAGCAAATCACTTGGAATGAGGATCACAAGCTCTACTTG 2220
||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 2139 AGTTAAGCTTCTAGCAACTATGAGTAAATCACTTGGGATGAGGATCACAAGCTCTACTTG 2198
Query 2221 CTTGACCACAGGATATGACATTTTGCAGCAACAAGGCGTTACGGATCTCACCAAATGGAA 2280
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2199 CTTGACCACAGGGTATGACATTTTGCAGCAGCAAGGCGTTACGGATCTCACCAAATGGAA 2258
Query 2281 TTGCTTGTGGGTCACGGTCGCTTGGGGCTTCTTCTTTCGAATCTTGTTCTACTTTTCTCT 2340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2259 TTGCTTGTGGGTCACGGTCGCTTGGGGCTTCTTCTTTCGAATCTTGTTCTACTTTTCTCT 2318
Query 2341 GCTTTTGGGTAGCAAGAACAAGAGGAGGTAAAAACAAAACTCAGTTTGATCTTATGGAGG 2400
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2319 GCTTTTGGGTAGCAAAAACAAGAGGAGGTAAAAACAAAACTCAGTTTTATCTTATGGAGG 2378
Query 2401 ACTGgtttgaaactt-gatttacctttgtttgttttctgtatttttcttttatctctttg 2459
|||| |||||||||| | ||||||||||||||||||||||||||||||||||| |||||
Sbjct 2379 ACTGATTTGAAACTTTGGTTTACCTTTGTTTGTTTTCTGTATTTTTCTTTTATTTCTTTC 2438
Query 2460 ttgtatattcttatatatgtGGTTGATAAATTGTTGAATTGGAGCCCAACT 2510
|||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 2439 TTGTATATTCTTATAT--GTGGTTGATAAATTGTTGAATTGGAGCTCAACT 2487
> Ahg485932 jgi|Araly1|485932|fgenesh2_kg.5__1924__AT3G55110.1
Length=2493
Score = 409 bits (221), Expect = 6e-113
Identities = 593/766 (77%), Gaps = 52/766 (7%)
Strand=Plus/Plus
Query 539 GACGGAGAGATACTAGCTGTGCTCGGAGCAAGTGGCTCTGGAAAATCGACGCTGATCGAT 598
|||||||| || || || || || || | ||| || |||||||||| || |||| ||
Sbjct 460 GACGGAGAAATCCTCGCCGTTCTGGGTGGAAGCGGAGCTGGAAAATCCACTTTGATAGAC 519
Query 599 GCGTTAG-C-GAATCGAATCGCTAAAGGA-AGCTTGAAAGGAAATGTAACTCTAAAC-G- 653
|| |||| | ||| || | || |||| ||| ||| ||| | |||||||||||| |
Sbjct 520 GCATTAGCCGGAA--GAGTGGC-GGAGGATAGCCTGAGAGGCACGGTAACTCTAAACGGA 576
Query 654 GAG-AAGTTCT-CAAT-TCGAAAATGCAGAAAGCGATCTCAGCTTATGTGATGCAAGACG 710
||| ||||| | |||| ||| | || ||||| |||||| || ||||||||||||||||
Sbjct 577 GAGAAAGTTTTGCAATCTCG--ATTGTTGAAAGTGATCTCGGCGTATGTGATGCAAGACG 634
Query 711 ATCTTCTTTTTCCGATGCTTACAGTTGAAGAAACCTTAATGTTCGCTGCCGAGTTTCGTC 770
||||||||||||||||||| || || |||||||| ||||||||||| ||||||||||||
Sbjct 635 ATCTTCTTTTTCCGATGCTCACCGTCAAAGAAACCCTAATGTTCGCTTCCGAGTTTCGTC 694
Query 771 TCCCGCGAAGCCTTT-CG-AAATCAAAGAAG-TCTCTCCGTGTCCAAGCCTTGATTGATC 827
||||| |||| ||| | ||||| |||||| | | |||| || || | |||||||
Sbjct 695 TCCCGAGAAG--TTTGCCTAAATCGAAGAAGATGGAGC-GTGTTGAAACCCTAATTGATC 751
Query 828 AGTTAGGACTTAGAAACGCGGCGAATACGGTGATCGGAGATGAAGGACACCGTGGAATCT 887
| ||||| ||||||||||||||| ||||||| |||||||||||||||||||||||| |||
Sbjct 752 AATTAGGGCTTAGAAACGCGGCGGATACGGTAATCGGAGATGAAGGACACCGTGGAGTCT 811
Query 888 CTGGAGGAGAGCGACGGCGAGTTTCAATCGGGATCGATATCATCCACGATCCGATTCTGC 947
|||| |||||||||||||| || ||||||||||| ||||||||||||||||| || || |
Sbjct 812 CTGGCGGAGAGCGACGGCGCGTGTCAATCGGGATTGATATCATCCACGATCCTATCCTCC 871
Query 948 TTTTCCTCGATGAACCAACTTCGGG-TCTGGACTCTAC-AAGTGC-TCTAAGTGTTATTA 1004
| |||||||| |||||||| ||||| | | ||||| || || ||| | || | || |
Sbjct 872 TCTTCCTCGACGAACCAACGTCGGGGT-TAGACTCCACCAA-TGCGTTTATG-GTGGTGC 928
Query 1005 AGGTTCTT-AAACGAATCGCTCAGAGTGGAAGTATGGTGATCATGACTCTTCATCAACCT 1063
||||| || |||||||| || |||||||| ||||| || || ||| | |||||||||||
Sbjct 929 AGGTT-TTGAAACGAATTGCGCAGAGTGGCAGTATTGTAATTATGTCGATTCATCAACCT 987
Query 1064 AGTTAC-CGTCTTC-TTCGATT-GCTTGATCGTCTTCTCT-TCTTGTC-C-CGTGGCCAA 1117
||| | ||| | | || |||| ||||||||| ||| | | |||| || | || || ||
Sbjct 988 AGTG-CTCGTAT-CATT-GATTTGCTTGATCGGCTTAT-TATCTTATCTCACG-GG--AA 1040
Query 1118 -ACTGTCTTCAGCGGATCGCCTGCGA-TGCTACCG-CGCTTCTTCGC-AGAGTTTGGCCA 1173
| ||| |||| ||||| || || | | || || || |||||| | | | ||||| |
Sbjct 1041 GAGTGTGTTCAATGGATCACCGGCTAGT-CTTCCTTCG-TTCTTCTCCA-ACTTTGGTCG 1097
Query 1174 TCCAATTCCTGA-ACATGAGAACCGCACCGAGTTCGCT-TTGGATTTGATACGTGAGCTG 1231
||| ||||| || | | |||||| ||| |||||||| ||| || | || || || ||
Sbjct 1098 TCCCATTCCGGAGAAA-GAGAACATCACAGAGTTCGCACTTG-ATGTAATTCGAGAACTT 1155
Query 1232 GAAGGATCAGCTGGTGGAACAAGAAGTTTAGTTGAATTCAAC-AAA 1276
|||||||| ||| ||||||||| ||||||| || |||||| |||
Sbjct 1156 GAAGGATCCTCTGAAGGAACAAGAGGTTTAGTAGAGTTCAACGAAA 1201
> Ahg482955 jgi|Araly1|482955|fgenesh2_kg.4__2015__AT2G39350.1
Length=2439
Score = 381 bits (206), Expect = 1e-104
Identities = 667/882 (76%), Gaps = 62/882 (7%)
Strand=Plus/Plus
Query 1529 GTT-TTAGTCACTGGATTCATCTTAGCCACTATGTTTTGGCAG-CTAGATAACTCCCCTA 1586
||| ||| |||| ||||||||| | ||||| |||| |||| | |||| || || || |
Sbjct 1518 GTTGTTA-TCACCGGATTCATCCTCGCCACCGTGTTCTGGC-GATTAGACAATTCACCAA 1575
Query 1587 AAGGAGTCCAAGAAC-GTCTTGGATGCTTCGCTTTTGCAATGTCCACAACGTTCTACACT 1645
||||||| ||||| | || | || | |||||| || || ||||| |||| ||||||||||
Sbjct 1576 AAGGAGTTCAAGAGCGGT-TAGGGTTCTTCGCCTTCGCGATGTCAACAATGTTCTACACT 1634
Query 1646 TGCGCAGATGC-TCTCCCTGTTTTCCTCCAAGAACGTTTCATTTTCATGAGAGAAACTGC 1704
||||| ||||| | | || ||||| ||||| ||||||| ||| |||||||||||||||||
Sbjct 1635 TGCGCCGATGCAT-TACCAGTTTTTCTCCAGGAACGTTACATCTTCATGAGAGAAACTGC 1693
Query 1705 TTACAACGCTTACCGAAGATCCTCCTATGTACTATCTCACTCTCTT-GT-TGCCCTCCCT 1762
||||||||||||||| ||||||||||| || || |||||| | | | || | | ||||
Sbjct 1694 TTACAACGCTTACCGGAGATCCTCCTACGTTCTCTCTCACGC-CATCGTCT-CTTTCCCG 1751
Query 1763 TC-CTTGATCATCCTCTCGCTT-GCTTTTGCAGCGATC-ACATTTTGGGGTGTGGGTTTA 1819
|| ||| ||| ||||||| | | ||||||||||||| | || | ||||| ||||| |||
Sbjct 1752 TCGCTT-ATCTTCCTCTC-CGTAGCTTTTGCAGCGA-CGACGTATTGGGCAGTGGGCTTA 1808
Query 1820 GATGGAGGTCTTATGGG--TTTCCTCTTCTACT-TCCT-AGTAATCTTAGCCTCTTTCTG 1875
|||||||| | ||||| ||| | ||||||| | | | | || |||||||| |||||
Sbjct 1809 GATGGAGGCCCAATGGGCCTTT--TGTTCTACTGTT-TGA-TCATTTTAGCCTCCTTCTG 1864
Query 1876 GGCAGGAAGCTCATTCGTCACCTT-CTTATCAGGCGTTGTCCCACACGT-T-ATGCTCGG 1932
| |||||||||| || ||||| || || |||||| || || || | || | ||| | ||
Sbjct 1865 GTCAGGAAGCTCCTTTGTCACGTTTCT-ATCAGGTGTGGTTCCT-A-GTGTGATGTTGGG 1921
Query 1933 TTACACCATTGTTGTAGCCATTTTAGCCTATTTCTTGCTT-TTCAGTGGATTCTTCATCA 1991
|||||| || || || || |||||||| || |||||| || |||||||||||||||||||
Sbjct 1922 TTACACAATCGTCGTTGCTATTTTAGCTTACTTCTTG-TTGTTCAGTGGATTCTTCATCA 1980
Query 1992 ACCGAGATCGAATCCCTGGCT-ACTGGATCTGGTTCCATTACATTTCCTTAGTCAAGTAT 2050
|| || | |||||||| || | ||||||| ||||| |||||||| || || || || ||
Sbjct 1981 ACAGAAACCGAATCCC-GGATTACTGGATTTGGTTTCATTACATGTCATTGGTGAAATAC 2039
Query 2051 CCTTATGAGGCTGTGCTCCTA-AACGAATTCGGTGACCCAACAAAGTGTTTCGTCAGAGG 2109
|| || || || || | | | ||||| ||| ||| | || |||||||| || |||||
Sbjct 2040 CCCTACGAAGCAGTTTTAC-AGAACGAGTTCTCTGATGCGACCAAGTGTTTTGTGAGAGG 2098
Query 2110 AGTTCAGATATTCGACAACACACC-TCT-GGTCGCGGTGCCTCAGGGGATGAAAGTT-AG 2166
||||||||| ||||||||||| || | | || | | || | | |||||| | | ||
Sbjct 2099 AGTTCAGATTTTCGACAACACTCCGT-TAGGG-GAATTACCAGAAGTGATGAA-GCTGAG 2155
Query 2167 GCTTCTAGCAACTA-TGAGCAAATCACTTGGAATGAGGATCA-CAAGCTCTACTTGCTTG 2224
||| || | || | ||||||| || || || ||| ||| | | ||||| || || ||
Sbjct 2156 GCTGCTTGGTAC-AGTGAGCAAGTCGCTCGGTGTGACGAT-ATCTAGCTCGACGTGTTTA 2213
Query 2225 ACCACAGGATATGACATTTTG-C-A-GCAACAAG-GCGTTACGGATCTCACCAAATGGAA 2280
|| || || | || ||| || | | |||| || | ||| | | || | ||||||||
Sbjct 2214 ACTACTGGTTCGGATATTCTGACGAAGCAAGGAGTG-GTT-CAG--CTGAGTAAATGGAA 2269
Query 2281 TTGCTTGTGGGTCACGGTCGCTTG-GGGCTTCTTCTTTCGAATCTTGTTCTACTTTTCTC 2339
|||||||| |||| || |||| ||| ||||| ||| | || ||||||||||| ||
Sbjct 2270 TTGCTTGTTCATCACAGTTGCTTTTGGG-TTCTTTTTTAGGATTTTGTTCTACTTCACTT 2328
Query 2340 TGCTT--TTGGGTAGCAAGAACAAGAGGAGGTAAAAACAAAA 2379
|| || |||| |||||||||||| |||||| |||||||||
Sbjct 2329 TG-TTACTTGGA-AGCAAGAACAAGCGGAGGTGAAAACAAAA 2368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94616168580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5