BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G13590.1 Length=5101 Score E Sequences producing significant alignments: (Bits) Value Ahg940824 jgi|Araly1|940824|scaffold_601368.1 2471 0.0 > Ahg940824 jgi|Araly1|940824|scaffold_601368.1 Length=3696 Score = 2471 bits (1338), Expect = 0.0 Identities = 1481/1550 (96%), Gaps = 10/1550 (1%) Strand=Plus/Plus Query 2231 CAGGTG-AAACTGAAGGCCGGATAGTTCAGGATGGTGAAGGAACGTCAGGTGTCTCTACA 2289 |||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2149 CAGGTGAAAAC-GAAGGCCGGATAGTTCAGGATGGTGAAGGAATGTCAGGTGTCTCTACA 2207 Query 2290 GTGTCAGGCGGCATTGAAAACCCTGAAATAGTAGATAACAGTAGTCCAGTTTCACT-CAA 2348 |||||| |||||||||||||||||||||||||||||||||| |||||||||||| | ||| Sbjct 2208 GTGTCATGCGGCATTGAAAACCCTGAAATAGTAGATAACAGCAGTCCAGTTTCA-TACAA 2266 Query 2349 GGCAGAAATGTCTACTATTGACAATGATTCTCCTATGGAGTGCAGTGACGGTAGTCAGAG 2408 |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 2267 GGCAGAAATGTCTACTATTGACAATGATCCTCCTGCGGAGTGCAGTGACGGTAGTCAGAG 2326 Query 2409 TCGAATTATAAACTTAACTCAGG----T--TAAATCTCCAGTTAAGGCACTAGATGCTTC 2462 ||||||||||||||||||||||| | |||||||||||| ||||||||||||||||| Sbjct 2327 TCGAATTATAAACTTAACTCAGGTTTCTAATAAATCTCCAGTGAAGGCACTAGATGCTTC 2386 Query 2463 AGGCAGCTTTGTGCCACCCCGAATGGAAAGAGATAGATTTCATGATTTCCCACTCGAACC 2522 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2387 AGGCAGCTTTGTGCCACCCCGAATGGAAAGAGATAGATTTCATGATTTCCCACTCGAACC 2446 Query 2523 GCGGGAATATACTTTCAGAGGGAGTGATGAATCCTGCAAATTCTCGCGTGAGAGGTACCA 2582 |||| |||||| |||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 2447 GCGGAAATATATTTTCAGAGAGAGTGATGAATCCTACAAATTCTCGCGTGAGAGGTACCA 2506 Query 2583 TGGCAGAATTATGAGAAGCCCAAGGTTAAATTTCATACCTGACAGAAGGAGATTACCTGA 2642 ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2507 TGGCAAAATCATGAGAAGCCCAAGGTTAAATTTCATACCTGACAGAAGGAGATTACCTGA 2566 Query 2643 TAACACAGAAAGCAATCTGCATGACCAGGACACaaaaaaaTTTGAGTTTGATAATCATGG 2702 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 2567 TAACACAGAAAGCAATCTGCATGACCAGGACACAAAAAATTTTGAGTTTGATAATCATGG 2626 Query 2703 AAACACTCGTCGGGGTGGTGCTTTTATGAGTAATTTTCAGAGAGGGAGACGGCCTGCAAA 2762 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2627 AAACACTCGTCGGGGTGGTGCTTTTATGAGTAATTTTCAGAGAGGGAGACGGCCTGCAAA 2686 Query 2763 TGATGGAGTTACACCATATGCTCACTCCTTTCCGAGAAGATCCCCTAGCTTTTCATATAA 2822 ||||| ||| ||||| ||| |||||||||||||||||||| |||||||||||| ||| Sbjct 2687 TGATGAAGTAACACCCTATTCTCACTCCTTTCCGAGAAGAAATTCTAGCTTTTCATTTAA 2746 Query 2823 TAGAGGACCAACAAATAAAGAGGATACATCTGCATTTCACGGATTTAGAGATGGTGAAAA 2882 ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 2747 TAGAGGACCAACAAATAAAGAGGATGCATCTGTATTTCACGGATTTAGAGATGGTGAAAA 2806 Query 2883 ATTCACAAGGGGATTACAATGCAACAACACAGAACCACTGTTTATGAATCACCAACGTCC 2942 ||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||| Sbjct 2807 ATTCACAAGGGGATTACAATGTAACAACACAGAACCAATGTTTATGAATCCCCAACGTCC 2866 Query 2943 ATATCGAGGTCGGAGTGGTTTTGCTCGAGGACGAACAAAGTTTGTAAACAACCCCAAACG 3002 ||||| |||||||||||||||| |||||||||||||||||||| ||||||| |||||||| Sbjct 2867 ATATCAAGGTCGGAGTGGTTTTACTCGAGGACGAACAAAGTTTTTAAACAATCCCAAACG 2926 Query 3003 AGATTTTCCTGGATTTCGTTCACGATCTCCAGTTAGATCAAGAGAAAGATCAGATGGTTC 3062 || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2927 AGGTTTTCCTGGATTTCGTTCACGATCTCCAGTTAGATCAAGAGAACGATCAGATGGTTC 2986 Query 3063 ATCCTCGTCTTTCAGGAATAGATCACAGGAAGAGTTCAGTGGGCATACAGACTTTTCTCA 3122 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2987 ATCCTCGTCTTTCAGGAACAGATCACAGGAAGAGTTCAGTGGGCATACAGACTTTTCTCA 3046 Query 3123 TCGAAGATCACCCTCAGGTTACAAAGTGGAGAGGATGAGCTCGCCTGACCATTCTGGTTA 3182 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 3047 TCGAAGATCACCCTCAGGTTACAAAATGGAGAGGATGAGCTCGCCTGACCATTCTGGTTT 3106 Query 3183 TTCAAGAGAAATGGTTGTCAGAAGACACAATTCTCCACCTTTCTCGCATAGACCATCGAA 3242 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 3107 TTCAAGGGAAATGGTTGTCAGAAGACACAATTCTCCACCTTTCTCGCATAGACCATCAAA 3166 Query 3243 TGCTGGAAGGGGCCGGGGTTATGCAAGGGGCCGAGGTTATGTAAGGGGTCGAGGTTATGG 3302 |||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 3167 TGCTGGAAGGGGACGGGGTTATCCAAGGGGCCGAGGTTATGCAAGGGGTCGAGGTTATGG 3226 Query 3303 AAGAGATGGCAACTCATTTAGGAAACCATCTGATCATGTTGTACATAGAAACCATGGAAA 3362 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 3227 AAGAGATGGCAACTCATTTAGGAAACCATCTGATCGTGTTGTACATAGAAACCATGGAAA 3286 Query 3363 CATGAATAACTTGGATCCTCGAGAAAGGGTTGACTATAGTGATGATTTCTTTGAAGGTCA 3422 | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 3287 CTTGAATAACTTGGATCCTCGAGAAAGGGTCGACTATAGTGATGATTTCTTTGAAGGTCC 3346 Query 3423 AATTCATTCTGAACGATTTGGTGTTGATGTTAATGCTGAGAGAAGACGATTTGGTTATAG 3482 ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 3347 CATTCATTCTAAACGATTTGGTGTTGATGTTAACGCTGAGAGAAGACGATTTGGTTATAG 3406 Query 3483 ACATGATGGTACCAGCAGCTCTTTTAGACCATCTTTTAACAATGATGGTTGTGCACCTAC 3542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3407 ACATGATGGTACCAGCAGCTCTTTTAGACCATCTTTTAACAATGATGGTTGTGCACCTAC 3466 Query 3543 TAATGTAGAGAATGACCCTGATGCTGTGAGGTTCCAACAAGACCCTCGTATTAAAATTGA 3602 |||||||||| ||||||||||||||||||||||| ||| ||||||| |||||||||||| Sbjct 3467 TAATGTAGAGCATGACCCTGATGCTGTGAGGTTCGGACAGGACCCTCATATTAAAATTGA 3526 Query 3603 AGAACAAGGGAGTTTAATGGAAATTGATGGAGAAAATAAGAACTCAACTGAGAATGCATC 3662 |||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||| Sbjct 3527 AGAACAAGGGAGTTTAATGGAAATTGATGGGGAAAATAAGATTTCAACTGAGGATGCATC 3586 Query 3663 TGGAAGAACTAAGAATATGGAAGAGGAAGAAACTTCAAAGAACAGTAAAATTTGGCAACC 3722 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 3587 TGGAAGAACTAAGAATATGGAAGAGGAGGAAACTTCAAAGAACAGTAAAATTTGGCAACC 3646 Query 3723 GGATGAGCTCGGTGGTGATGGTTTTTAAAATAAAGGTTAGTATTCAATTT 3772 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3647 GGATGAGCTCGGTGGTGATGGTTTTTAAAATAAAGGTTAGTATTCAATTT 3696 Score = 1295 bits (701), Expect = 0.0 Identities = 898/990 (91%), Gaps = 25/990 (3%) Strand=Plus/Plus Query 1258 GCTGGGAATGTGTGTTCAGTGAACCTTAGGACTGTGAAGTCAGAAATCGTTGAAGAGAGT 1317 |||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct 1098 GCTGGGAATGTGAATTCGGTGAACCTTAGGACTGTGAAGTCAGAAATCATTGAAGAGAGT 1157 Query 1318 GTTAGGCAGGCAAC--AG-AGAGTACTCAAGTTTCTCCAATCGGGCTATCTATTAAAGGA 1374 |||||||||| ||| || ||||| ||||||| | |||||| |||||||||||||||||| Sbjct 1158 GTTAGGCAGGAAACTGAGAAGAGTGCTCAAGTCTGTCCAATTGGGCTATCTATTAAAGGA 1217 Query 1375 CTGAAACATGAGGGTATTGGCAGATTCAGCCAAGGAAATAGTCCCTCATTTGGCATTTTG 1434 |||||||||||| | ||||||||||||||||||||||||||||||||| || ||||||| Sbjct 1218 GTGAAACATGAGGTTGTTGGCAGATTCAGCCAAGGAAATAGTCCCTCATCTGTCATTTTG 1277 Query 1435 AAGACAGTGGTTCCTATATCAATAAAGGCTGAGCCAAATACCTTCTCTCAATCAGAAGTT 1494 ||| ||||||||||||||||||||||||||||||||||||||||| | ||||| |||||| Sbjct 1278 AAGCCAGTGGTTCCTATATCAATAAAGGCTGAGCCAAATACCTTCACCCAATCGGAAGTT 1337 Query 1495 TTCAATAGGAAAGATGGAATGTTGAATCATCCCCATACCCCAATAATGCAATCAAATGAG 1554 |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct 1338 TTCAATAGGAAAGATGGAATGTTGAATCATCCCCATACACCAATAGTGCAATCAAATGAG 1397 Query 1555 ATCCCTGATTTACCTACAAGTTCTACGCCATATCAGAAGGATAAATATTTACCTTGTTCA 1614 ||||||||||||||||||||||||||||||||||||||||||| | || |||||||||| Sbjct 1398 ATCCCTGATTTACCTACAAGTTCTACGCCATATCAGAAGGATACACATATACCTTGTTCT 1457 Query 1615 AATGGTATCAGCAATGCACCAATGCCCTT-GAGTGGAATGACAATAATTCCAGGCGTTCA 1673 |||||||||||||||||||||||| |||| || ||||||||||||| ||||||||||||| Sbjct 1458 AATGGTATCAGCAATGCACCAATGTCCTTAGA-TGGAATGACAATAGTTCCAGGCGTTCA 1516 Query 1674 GAGTGATCCTGACTGTACATCAAAAGAAAATTCGGGCCAGAGTAGCAGTTTAGCTAATGG 1733 || ||||||||||||||||| |||||||||||| || |||||||||||| ||||||| Sbjct 1517 GATTGATCCTGACTGTACATTAAAAGAAAATTCAGGTCAGAGTAGCAGTGTAGCTAA--- 1573 Query 1734 TAAATTACGCGAAGTGCTGAAACATGGTGGAGTTTACACGACTTATTC-TG----G-TCA 1787 | ||| |||||||||||||||||||||||||| ||||||||||||| || | ||| Sbjct 1574 -A--TTATGCGAAGTGCTGAAACATGGTGGAGTTCACACGACTTATTCATGTTCTGGTCA 1630 Query 1788 TGGAGATCATAACCTCAATGCTTCAGGTGTGAATGTTACTTCCTTGACTGAAGAGAAAAT 1847 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1631 TGGTGATCATAACCTCAATGCTTCAGGTGTGAATGTTACTTCCTTGACTGAAGAGAAAAT 1690 Query 1848 ACTAGATGATTGCAAG-CCTTGTATATCGAAAGAACTCCCTTGTAATTCTCGTGGAACTG 1906 |||||||||||||| ||| |||||||||||||| ||||| ||||||||||||||||| Sbjct 1691 TGTAGATGATTGCAAGACCT-GTATATCGAAAGAAATCCCTCATAATTCTCGTGGAACTG 1749 Query 1907 ATGAACTTTCCAGAAATGATGAAGAGAAGATTACTTTACCTGGTAAGGAGCTAGAGGAAC 1966 |||||| ||| | |||||||||||| ||||||| |||| ||||||||||||||||||||| Sbjct 1750 ATGAACGTTCTATAAATGATGAAGAAAAGATTATTTTATCTGGTAAGGAGCTAGAGGAAC 1809 Query 1967 AGTTATACAGTTATGGGTTTGAATCAGATCGTGGTTATGATCTATCTAGAGTAATAAAGG 2026 ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| Sbjct 1810 AGTTATACAGTTATGGGTTTGAATCAGATTGTGGTCATGATCTATCTAGAGTAATGAAGA 1869 Query 2027 AGCAAGTTG-GCAAAAGAAATTTGTGCGATGACGGGAAGGTCCAAGGACCAGCTGCCGTT 2085 ||||||||| | |||| |||| ||| ||||||||||||||| |||||||||||||||||| Sbjct 1870 AGCAAGTTGAG-AAAACAAATCTGTACGATGACGGGAAGGTTCAAGGACCAGCTGCCGTT 1928 Query 2086 TTCACGGAAAGTAATGAGGTTGCACAT-CCTGAGTGTGGTGGTTCTGAAACTGAACAAAG 2144 ||||||||||| ||||||||||||||| || || | ||||||||||||||||||| ||| Sbjct 1929 TTCACGGAAAGAAATGAGGTTGCACATGCC-GAATACGGTGGTTCTGAAACTGAACGAAG 1987 Query 2145 GAACATTAATGTTCCATGCCATG-TCCACTTTCATAATTCTAACCATGTGGAAGAAAAAG 2203 |||||||||| |||| ||||||| | | ||||| ||||||||||| ||||||||||||| Sbjct 1988 GAACATTAATATTCCGTGCCATGGTG-ATTTTCAAAATTCTAACCACGTGGAAGAAAAAG 2046 Query 2204 GGAGTCAACCTGCACTTCTTGGTTATACAG 2233 ||||||| ||||||||||||| | |||||| Sbjct 2047 GGAGTCAGCCTGCACTTCTTGATAATACAG 2076 Score = 1240 bits (671), Expect = 0.0 Identities = 949/1075 (88%), Gaps = 52/1075 (5%) Strand=Plus/Plus Query 226 GACCCTCGAAGTTCAACTATGTCTGGAAGCCAAGAGCCTAGGATCAGACCATCTACATGG 285 |||||||| ||||| |||||||||||||||||||||||||||||| | |||||||| ||| Sbjct 4 GACCCTCG-AGTTCTACTATGTCTGGAAGCCAAGAGCCTAGGATCCGGCCATCTACCTGG 62 Query 286 AGCTGCAGTGATATTCCAATCAAGAAGAGGAAGTACCTTGTTCAGCCGCAAATGGAAGAA 345 ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 63 AGCTGCAGTGATATTCCAATCAAGAAGAGGAAGTACCTTGTGCAGCCGCAACTGGAAGAA 122 Query 346 GCTGTCTCCACTCAGATTCCACAACCTAATGAGCAAGGTGATACTA--GGAG-TGCT--C 400 |||| |||| | |||||||||||||||| ||||||||||||||||| || | || | Sbjct 123 GCTGCCTCCTCACAGATTCCACAACCTAGTGAGCAAGGTGATACTAGTGGTGCTGGTAGG 182 Query 401 A-TG-C-T-GACGAAACTC-AGAAAATGACTGGTCGAGAACCAACCTCTTCATTACCATC 455 | || | | | | ||| || |||| || |||| || | | | ||||| Sbjct 183 AGTGCCTTGGTTTCATCTCTAGCCGATGA-AAATC-AGAA--AATGAC-T-GGT-CCATC 235 Query 456 TGTTCCTGTGGGAATTTCTGGTAAAGGGAAGAGCATTGGGAACA-TAGTTTTTGACCAAA 514 |||| ||||||||||| ||||||||||||||||||||||||||| || |||| ||||||| Sbjct 236 TGTTTCTGTGGGAATTGCTGGTAAAGGGAAGAGCATTGGGAACATTA-TTTTAGACCAAA 294 Query 515 CTAGAGTGAAATTTGAGAAGCCAAGTTCTCCAATTCACTCCAGTCCATTGGCAGGCTTTG 574 |||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 295 TTAGAGTGAAAGTTGAGAAGCCAAGTTCTCCAATTCACTCCAGTCCTTTGGCAGGGTTTG 354 Query 575 ACATCCCTTCTAGTTCTAACGTACTTGGCAGTTCAATCCATT-TTCCTATGGGAAAGCTT 633 | ||||||||| ||| ||| ||||||||||||| |||||| || || ||||||||||| Sbjct 355 ATATCCCTTCTTCTTCCAACATACTTGGCAGTTCTCTCCATTGTT-CTCTGGGAAAGCTT 413 Query 634 CCTGTTGGTGCTGAACATGCTGGTCTTGTTGTCCCCTCAAAT---CAAACTCGGATGAAA 690 ||||||||||||||||| ||||| |||||||| ||||| | |||||| |||||||| Sbjct 414 CCTGTTGGTGCTGAACACCCTGGTGTTGTTGTCACCTCAGGTGCACAAACTGGGATGAAA 473 Query 691 GTAGAAAAAACTGTTCTTAAGACTCATGATA-TAGTC-CGGAAGACAG-GTGACAAGGAA 747 ||||||||||| |||||||||||||||||| | ||| || |||| | ||||||||||| Sbjct 474 CTAGAAAAAACTCTTCTTAAGACTCATGATAGT-GTCAAGG-AGAC-GTGTGACAAGGAA 530 Query 748 ACTCTCAGAGGAGAGTGTCAAACAGAAGCATCTTCTGGTGCTAAGACTGTTTCCTTACAG 807 ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 531 ACTCTCAGAGGAGAGTGTCTAACAGAAGCATCTTCTGGTGCTAATACTGTTTCCTTACAG 590 Query 808 CTAAGTTGTAACACTAAAAACAATTCTCCATATTGGAAGGATGAAGAGCCTACAGAACTG 867 ||| |||||||||||||||||| |||||||||||||||| | |||||||||||||||||| Sbjct 591 CTAGGTTGTAACACTAAAAACAGTTCTCCATATTGGAAGAACGAAGAGCCTACAGAACTG 650 Query 868 AATTTGTCATTAAGCAAGGGAGTTTGTCCCGCTCATAACACAGATTCTACTTCTAC---- 923 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 651 AATTTGTCATTAAGCAAGGGAGTTTGTCCCGCTCATAACACAGATTCTACTTCTACTTGT 710 Query 924 -C-AAATCTGGCAACAGTGGCCTGAACAGAGAAAATTGGGATTTGAATACTACCATGGAT 981 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 711 ACTAAATCTGGCAACAGTGGTGTGAACAGAGAAAATTGGGATTTGAATACTACCATGGAT 770 Query 982 GTTTGGGAAGATGCTCTAGATCGCAC-A--AG----A-G------G-TGCATTCTTAAAC 1026 | |||||||| ||||||||||||||| | || | | | ||||||||||||| Sbjct 771 GCTTGGGAAGGTGCTCTAGATCGCACGACTAGGGTTAAGACAACTGGTGCATTCTTAAAC 830 Query 1027 AGTAACAGAAGTCTTCGTGACATAGAGAGATCAAGTTGTCGTGATACGACTGCTATTACA 1086 ||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||| || Sbjct 831 AGTAACAGAAGTCTTCGTGACATAGAGGGATCAAGTTGTAGTGATACGACTGTTATTGCA 890 Query 1087 AAGTCTGTTTCTGAAAGACAGAAGGAAAGTGTAGGATTTAGTTCTCCTAAGGTGACGTTG 1146 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 891 AAGTCTGTTTCTGAAAAACAGAAGGAAAGTGTAGGATTTAGTTCTCCTAAGGTGACTTTG 950 Query 1147 ATGCAGTTTGATAATCATGTTAATCCCACATGCTCACTTAGTCTAGGCCTCAGTTCATAT 1206 ||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||| Sbjct 951 ATGCAGTTTGATAATCAGGTTAACCCCACATGCTCACTTAATCTAGGCCTCAGTTCATAT 1010 Query 1207 CCTCCTATTGAGAAATCTCCTTCTCTACCAGCTACCACATCAGAGGCAAGAGCTG 1261 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1011 CCTCCTATTGAGAAATCTCCTTCTCTACCAGCTACCACATCAGAGACAAGAGCTG 1065 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 193104125402 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5