BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13610.1
Length=1490
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488180 jgi|Araly1|488180|fgenesh2_kg.6__1314__AT5G13610.1 2036 0.0
> Ahg488180 jgi|Araly1|488180|fgenesh2_kg.6__1314__AT5G13610.1
Length=1475
Score = 2036 bits (1102), Expect = 0.0
Identities = 1376/1502 (92%), Gaps = 43/1502 (3%)
Strand=Plus/Plus
Query 1 GGCGGCTCTGTTGTTGATCTTCTTCTCCGGTGACTCTTACTCTCTGTGTAAAAAAGCAAA 60
||||||||||| ||||||||||||||||||||||||||| |||||| | | |||||||
Sbjct 1 GGCGGCTCTGTGGTTGATCTTCTTCTCCGGTGACTCTTA--CTCTGT-T-TAGAAGCAAA 56
Query 61 ATGATGCGTTCCGTTGACGTCTACGTGAAAACTCTAGGCCCTCCCGTCCGTTCAATTCTC 120
|||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||
Sbjct 57 ATGATGCGTTCCGTTGACGTCTACGTAAAAACCCTAGGCTCTCCCGTCCGTTCAATTCTC 116
Query 121 TACTCGATCTTTACCTCTCAGCAAAAACCTTCGTCGCTGCCTTCGCTTCCATTTCACTTT 180
|||||||||||||||||| |||| ||||| ||||||| |||||||||||| |||||
Sbjct 117 TACTCGATCTTTACCTCTAAGCATAAACCGCCGTCGCT---TTCGCTTCCATTGCACTTG 173
Query 181 TCGTTGCGTTCGTCGTCGAATATTCCCACTCGTTGTTTCTCCAATGTCGTTGCGAAATCC 240
||| |||||||||||||||||| ||||||||||||||||||||||||| | |||| ||||
Sbjct 174 TCGCTGCGTTCGTCGTCGAATACTCCCACTCGTTGTTTCTCCAATGTCCTAGCGATATCC 233
Query 241 AATTCTCCGATTTACGATTTTCAAGGATTCCGAAATCTCTTCACT--G---A-GAGGGCT 294
||||||||||||| | | ||| ||||||||||||||||| | | |||||||
Sbjct 234 AATTCTCCGATTT---A----C--GGAATCCGAAATCTCTTCACTGCGACTACGAGGGCT 284
Query 295 ATCTCTTCGTCTACGACGACCCCCGTCGCTTCTGCTCAGCCGCAGCAGCTTCAGA-ATCA 353
|||||||||||||||||||| ||||||||||||| |||||||||||||| || | |||
Sbjct 285 ATCTCTTCGTCTACGACGACGCCCGTCGCTTCTGTTCAGCCGCAGCAGCAGCA-ACTTCA 343
Query 354 GAATCAGCATCCAGCTGAGGTTGATGAAGAGATTTCTATGGGCTTAGAGGACGAAGCCAA 413
|||||||||| ||| ||||||||||| ||| |||||| |||||| ||||||||||||||
Sbjct 344 GAATCAGCATTCAGAGGAGGTTGATGATGAGGTTTCTAAGGGCTTGGAGGACGAAGCCAA 403
Query 414 GCTTTCTATTCCTGTGCGAGCTTATTTCTTCTCCACTAGCGTTGATTTGAGAAGCTTAAT 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 GCTTTCTATTCCTGTGCGAGCTTATTTCTTCTCCACTAGCGTTGATTTGAGAAGCTTAAT 463
Query 474 AGAGCAGAACAAGCAGAACTTCATCCCACCTACTTCGCGTATGACTAACTATGTTGTTCT 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 TGAGCAGAACAAGCAGAACTTCATCCCACCTACTTCGCGTATGACTAACTATGTTGTTCT 523
Query 534 TAAGTTTGGCAATCATTCTGATCCCACTGATACTACTCGA-GGACGCATAAGTGGGAGTG 592
|||||| |||||||||||||||||||||| |||||||| | |||||||||||||||||||
Sbjct 524 TAAGTTCGGCAATCATTCTGATCCCACTGGTACTACTC-ATGGACGCATAAGTGGGAGTG 582
Query 593 AGTCTATTTACATGGTAGTATTTCATTATGGATCGATTGTCTTGTTTAATGTAAGGGAAC 652
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 AGTGTATTTACATGGTAGTATTTCATTATGGATCGATTGTCTTGTTTAATGTAAGGGAAC 642
Query 653 ATGAGGTTGATGAATATCTTAAAGTAGTGGAGAGGCATGCCTCTGGGTTGCTTCCAGAAA 712
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 643 ATGAGGTTGATGAATATCTTAAAGTAGTGGAGAGGCATGCCTCTGGTTTGCTTCCAGAAA 702
Query 713 TGAGAAAAGATGAATATGAAGTAAGAGAGAATCCAAATCTGGACACATGGATGGAGGTAG 772
||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| ||
Sbjct 703 TGAGAAAAGATGAATATGAAGTAAGAGAGGATCCAAATCTGGACACCTGGATGAAGGGAG 762
Query 773 GACGGGATTTTATCAGGTTGCAGTTCTTGAATACTGATGGGATCAGAACCATAGG-ATGT 831
||||||||||||||||||||||||||||| ||| |||||||||||||||||| || | ||
Sbjct 763 GACGGGATTTTATCAGGTTGCAGTTCTTGTATATTGATGGGATCAGAACCATTGGCA-GT 821
Query 832 GTTCTGGGCCAGAGTATTGCTCTGGATTACTATGGCCGGCAGGTTGATGGTATGGTAGCA 891
|||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 822 GTTCTGGGCCAGAGCATTGCTCTGGATTACTATGGCCGCCAGGTTGATGGTATTGTAGCA 881
Query 892 GAATTTACTGAGATAAACCGTCAGTTGGAGATAACAGGAACGTTTACAATGAAAAGGAAA 951
||||||||||| || |||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 882 GAATTTACTGACATTAACCGTCAGTTGGAGATAACTGGAACGTTTACAATGAAAACGAAA 941
Query 952 AAGCTGTTCCAGTTGGTTGGAAAGGCTAATG-TGATTCTGGCTGATGTGATTCTGAAGCT 1010
|||||||||||||||||||||||||||||| | || | |||||||||||||||||||||
Sbjct 942 AAGCTGTTCCAGTTGGTTGGAAAGGCTAATTCTAAT-CAGGCTGATGTGATTCTGAAGCT 1000
Query 1011 TGGTCTTTTTGAGAGGTCAGATATAGCTTGGAAGGATGCGAAATATGGTCAGATATGGGA 1070
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1001 TGGTCTTTTTGAGAGGTCAGATATAGCCTGGAAGGATGCCAAATATGGTCAGATATGGGA 1060
Query 1071 GTTTCTGAGAGATGAATTTGAACTGACACAGAGTTTTGCAAACCTTGATTATAAGCTCAA 1130
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1061 ATTTCTTAGAGATGAATTTGAACTGACTGAGAGTTTTGCAAACCTTGATTATAAGCTCAA 1120
Query 1131 GTTTGTAGAGCACAACGTTCGTTTCCTTCAAGAAATACTTCAGAACAGGAAATCAGCTAC 1190
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1121 GTTTGTAGAGCACAACGTTCGTTTCCTTCAAGAAATACTTCAGAACAGGAAATCAGCTTC 1180
Query 1191 TCTGGAGTGGCTAATCATTATCCTGATTAGTATGGAGATCGCGATTTCTTTCTATAATAT 1250
||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct 1181 TCTGGAGTGGCTAATCATTATCCTGATTAGTGTTGAGATCGCGATTTCTTTGTATAATAT 1240
Query 1251 GTCT-CGGGCATCCTTGTGATCGAGATCA-TCCTCTGCCATTTCTAAAGCATATTCATAT 1308
||| || ||||||||||||||| ||| || ||| |||||||||||||||||||||||
Sbjct 1241 GTCCACGA-CATCCTTGTGATCGA--TCACTC-TCTACCATTTCTAAAGCATATTCATAT 1296
Query 1309 TCTTTATTATGGTTACCACTTTTCTTCACAATGCAAAGTGATAACTTTA--TAACAAAGC 1366
|||||||||||||||||||||||||||||| || ||||||||||| | | | |||
Sbjct 1297 TCTTTATTATGGTTACCACTTTTCTTCACAGTGTAAAGTGATAACAA-AGCTCATAAA-- 1353
Query 1367 TCATAAATA-AG-AATGAGTTTAGGAGTTAGGACTACGTTTGTTACAGATTCTCTTTGCA 1424
| |||| | || ||||||||| ||||||||||||| |||||||||||| || |||||||
Sbjct 1354 TAATAACTTTAGGAATGAGTTTGGGAGTTAGGACTAAGTTTGTTACAGACTCCCTTTGCA 1413
Query 1425 TTTAAGAGCCTGCTTCTTTTCAGTCCAACAAGACTTGGTTATGCATATAAAATCATTTAT 1484
|||||| |||||| ||||||||||||||||||||||| ||||||||| |||||||||| |
Sbjct 1414 TTTAAGCGCCTGCGTCTTTTCAGTCCAACAAGACTTGTTTATGCATAGAAAATCATTTTT 1473
Query 1485 TT 1486
||
Sbjct 1474 TT 1475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55764118680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5