BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13620.1
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488181 jgi|Araly1|488181|fgenesh2_kg.6__1315__AT5G13620.1 1330 0.0
> Ahg488181 jgi|Araly1|488181|fgenesh2_kg.6__1315__AT5G13620.1
Length=924
Score = 1330 bits (720), Expect = 0.0
Identities = 850/911 (93%), Gaps = 15/911 (2%)
Strand=Plus/Plus
Query 5 CTTCATCTTCATCTGCAGTAGCCGTGACGCGAGACGAGTTCAATGCTTTCCACAAGTGTG 64
|||||||||||||||||||| | |||||| |||||||||||||||| |||||||||||||
Sbjct 20 CTTCATCTTCATCTGCAGTATCGGTGACGAGAGACGAGTTCAATGCCTTCCACAAGTGTG 79
Query 65 ACAGAGCCCTTTTCCGCCGTTTTGTCGTGCGACTAAGGCGAGACATTAATCAGTCTCTCC 124
|||||| ||||||| |||||||||||| ||| |||||||||||||||| |||||||| |
Sbjct 80 ACAGAGACCTTTTCAGCCGTTTTGTCGGGCGTCTAAGGCGAGACATTAGCCAGTCTCTTC 139
Query 125 AGGTCATGAGCTTTCTCCTCTATCTCGAGAAAAGTGGTCTTGTAAGCAACCTAATCGTCA 184
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 140 AGGTCATGAGCTTTCTCCTCTATCTCGAGAAAAGTGGTCTCGTAAGCAACCTAATCGTCA 199
Query 185 ACTTTAATTCTTTACCTGATTTCTTCATCAACACAGTGGCTGACGAAGTTGTTATGTGTC 244
|||||||||||||||| ||||||||||||||| |||||||||||||||| || |||||||
Sbjct 200 ACTTTAATTCTTTACCCGATTTCTTCATCAACGCAGTGGCTGACGAAGTCGTGATGTGTC 259
Query 245 TGAGTTGTTTGTCCTACGAAAATTTCTCTATGTTTGTTGCCAACTTTGGGaaaaaaaTCA 304
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||
Sbjct 260 TGAGTTGTTTGTCCTACGAAAATTTCTCAATGTTTGTTGCCAACTTTGGGCAAAAAACCA 319
Query 305 TACCTTTGATCACGCGGATGACTGGAGAGTACCTTACTCTCGCAGTCATCCACCAGAACC 364
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 320 TACCTTTGATCACGCGGATGACTGGAGAGTACCTTACTCTCGCAGTAATCCACCAGAACC 379
Query 365 GTGAAAGCATTCTTCTTGAC-ATGAAGAAGCATTTAACCAGTATATGTTACCCAGCTTTT 423
| ||||||||||||||| | |||||| ||||||||| ||||||||||||||||||||||
Sbjct 380 GCGAAAGCATTCTTCTT-TCGATGAAGGAGCATTTAAACAGTATATGTTACCCAGCTTTT 438
Query 424 GAGGATATATGCGTGCAAGCTGAGAAGGAAAAGGTGATAGAGGATATGAAGCACTTGGGG 483
|||||||||||||||||||||||| || |||||||||| |||||||||||||| ||||||
Sbjct 439 GAGGATATATGCGTGCAAGCTGAGGAGAAAAAGGTGATGGAGGATATGAAGCAGTTGGGG 498
Query 484 TTTAGCAAGG-C-----TGTTCATAAAGCTGGATCAAGTAGCCAGTTCTTAAGTGAACAA 537
|||||||||| | |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 499 TTTAGCAAGGACAAGGTTGTTCATAAAGCTGAATCAAGTAGCCAGTTCTTAAGTGGACAA 558
Query 538 CAAGCAACAACAAGAACAAGCAAGGTTGGTGTATTCTCTGAGGATGAGCAAGCAAGGGAA 597
|||| ||||||||||||||||||| |||||| ||| |||||||||||||| |||||||||
Sbjct 559 CAAGTAACAACAAGAACAAGCAAGATTGGTGCATTTTCTGAGGATGAGCAGGCAAGGGAA 618
Query 598 GACGACAGGACTGTCTTCCTCACATTTTCTAGAGGATACCCGCTTTCTGAAGCTGAAGTG 657
|||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||
Sbjct 619 GACGACAGGACTGTCTTCCTCACATTTTCTAGAGGATACCCGATTTCCGAAGCAGAAGTG 678
Query 658 CATGCCTACTTCACCAGGAGATTTGGAGAGATTATAGAAGCGATAATCATGCCTGGAGGG 717
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 679 CATGCCTACTTCACCAGGAGATTTGGGGAGATTATAGAAGCGATAATCATGCCTGGAGGA 738
Query 718 GAAGGGAATGAGCAGGCGCTGTATGCAAAGATGGTGTTACATTCTGCAGCCATGATACCG 777
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 739 GAAGGGAGTGAGCAGGCGCTGTATGCAAAGATGGTGTTACGTTCTGCAGCCATGATACCG 798
Query 778 GAGATTGTAAGTGATGGGATCGA-AAGGAACAAGTACACCATTAATGGAAAACATGTTTG 836
||||||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||
Sbjct 799 GAGATTGTAAGTGATGGGATC-ACAAGAAACAAATACACCATTAATGGAAAACATGTTTG 857
Query 837 GGCTCGAAAATACATTCCCAGATCCTCCATTAATAATAATCTTGCCCCATCCTATGGAGT 896
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 858 GGCTCGAAAATACATTCCCAGATCCTCCATTAATAAT---CTTGCCCCATCCAATGGAGT 914
Query 897 -TGCTCTCTAG 906
| || |||||
Sbjct 915 CT-CTATCTAG 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33586289877
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5