BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13660.2
Length=2141
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488185 jgi|Araly1|488185|fgenesh2_kg.6__1319__AT5G13660.1 2244 0.0
> Ahg488185 jgi|Araly1|488185|fgenesh2_kg.6__1319__AT5G13660.1
Length=1876
Score = 2244 bits (1215), Expect = 0.0
Identities = 1683/1896 (89%), Gaps = 83/1896 (4%)
Strand=Plus/Plus
Query 259 TGACGCCGCGTTCGAGCTACTGAAGTAGCTAACATCAACTTTTAAGAACATCGCTGCGAT 318
||||| ||||||||||||||||||| |||||| || |||| ||||||||| | |||||||
Sbjct 46 TGACGGCGCGTTCGAGCTACTGAAGAAGCTAATATTAACTATTAAGAACAGCTCTGCGAT 105
Query 319 CTCACTCCCAGGGATGCAAATCCAAGATGATGAGAAAAGATATTAGCAGAAAGGATATAA 378
|| |||||||||||||||| ||||||| ||||| | |||| |||| ||||||||| |
Sbjct 106 CT-ACTCCCAGGGATGCAATTCCAAGAGGATGATAGCAGATTTTAGTAGAAAGGATTTTG 164
Query 379 TTGAGGAGATTCCATATTCTGGTTCTTCGAGAATGGAATTAAAGCGGAGTCATCATCAGT 438
||||| |||||||||||||||||||||| | ||||||||||||||||||| |||||||||
Sbjct 165 TTGAGAAGATTCCATATTCTGGTTCTTCAACAATGGAATTAAAGCGGAGTTATCATCAGT 224
Query 439 GGTTGACAGAAGAGTCTAGCTCAGAACTATTC-AGTAATAAGAGACAACAAGTGGTAGAG 497
||||||||||| |||||||||| || ||||| || |||||||| |||| || | |
Sbjct 225 GGTTGACAGAACCGTCTAGCTCACAAGTATTCAAG-AATAAGAG---ACAA---GT-G-G 275
Query 498 ATTGATGCTCATATGAATTTATCTCCATGGGACACTTCTCTTGTG-CC-C-TCACACTTC 554
| ||||||||||||||||||||| ||| |||||||||||||||| || | ||||||||
Sbjct 276 -TCGATGCTCATATGAATTTATCTTCATTGGACACTTCTCTTGTGCCCACAACACACTTC 334
Query 555 ACTGATTGCTTATTCGATGATCCTGCCATTGCGCATACATCACATCTTCTCCGTAATGGT 614
||||||||||||||| || ||||||| ||||||| |||||||||| ||||| || |
Sbjct 335 ACTGATTGCTTATTC---GACCCTGCCAATGCGCATTCATCACATCTCCTCCG---TGCT 388
Query 615 CGAAATTATACTGAGGAGCAATGCAATCCTGTTTCATCTTTTGGTTTGCCACTGGCTCAT 674
||||||||||| | ||| | ||||| | | | ||||||||||| ||| | |
Sbjct 389 CGAAATTATAC--A-GAG-GA-GCAAT-C----T-A----TTGGTTTGCCAGTGG-T--T 430
Query 675 CACGGGAGCTCTTTTAATCTTGACACCATTA-ATAAAGTTAGCAACGTGCCCGAGTTCAT 733
|| |||||||||||||||||||||||||||| | |||||||||||| ||||||| |||||
Sbjct 431 CATGGGAGCTCTTTTAATCTTGACACCATTAGA-AAAGTTAGCAACTTGCCCGACTTCAT 489
Query 734 GGTTCAGCTTTATGGTCAGGGAATTTCAACATCATTTGAAACGGC-TCCTTCTTTTAATA 792
||||||||||||| | ||||| ||||||||||||||||||| || |||||||| |||||
Sbjct 490 GGTTCAGCTTTATAATGAGGGATTTTCAACATCATTTGAAAC-GCTTCCTTCTTATAATA 548
Query 793 GTGGTCAAGAGAGTACTACGCTATCCTTTGGCCAAACCT--TC-AGTAATACTGACAGGA 849
||||||||||||| | |||||||||||||||||||||| | |||| || ||||| ||
Sbjct 549 GTGGTCAAGAGAG--C-ACGCTATCCTTTGGCCAAACCTGCACTAGTAGTATTGACAAGA 605
Query 850 GCTTCATCTTGCCAGG-GCAGTTCGCTAGCAAAACAGATGGAAATTTCATTCGAAACTTC 908
|||||||||| ||||| || ||||||||||| |||||||||||||||||| ||||||
Sbjct 606 GCTTCATCTTCCCAGGACCA-TTCGCTAGCAAGGCAGATGGAAATTTCATTCAAAACTTT 664
Query 909 AATAATGAAGGTGTTGGTGTCGTACCGATTGGTGATTA-TTATGACAAAGGAGATGAAAA 967
| |||||||||| ||||| ||||||| | ||||| || || |||||||||||||| |||
Sbjct 665 AGTAATGAAGGTATTGGTCTCGTACCAACCGGTGA-TATTTTTGACAAAGGAGATGGAAA 723
Query 968 TGTCCTGTCAACATTTCATCCGTTGGAGAAAGGAGTAGAAAACTTTCTATCGATGGGTCA 1027
|||| |||||||||||||||| || |||||||||||||||||||| | | |||||||||
Sbjct 724 TGTCTTGTCAACATTTCATCCATTTCAGAAAGGAGTAGAAAACTTTGTTTTGATGGGTCA 783
Query 1028 GTCTCTTCAAAAGGCTGATTGTAATATCTTCTCAGTGAGTTCCTCCTATAATAAGGGACA 1087
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 784 GTCTCTTCAAAAGGCTGATTGCAATATCTTCTCAGTGAGTTCCTCCTATAACAAGGGACA 843
Query 1088 GGAGAACTTTATGCCTCTTCTCTCTTGTGAAC-AAGTACCT-GAATACGATTTCATGACC 1145
|||||||||||||||||||| ||||||| || || | ||| ||| ||| ||||||||||
Sbjct 844 AGAGAACTTTATGCCTCTTCTATCTTGTG-ACAAATTGCCTGGAA-ACGTTTTCATGACC 901
Query 1146 GAATCTAACT-ATCACAATGAAAATGCCAATGCGTTGTC-AGCGGGACAGTCCT-CATTT 1202
| ||| || | || |||| ||||||| |||||| ||||| || |||| ||| || |||||
Sbjct 902 GGATC-AAATAATTACAAAGAAAATGTCAATGCCTTGTCAAG-GGGAGAGT-CTCCATTT 958
Query 1203 ACGGAAGGCGGTGAGATGACATTTATGGTTTCTAGCCAAGAGAGAGCAGGTCAAAGCAAT 1262
|||||||||||||||||| |||||||||||||||||| | |||| | | || | |
Sbjct 959 ACGGAAGGCGGTGAGATGGCATTTATGGTTTCTAGCC---A-AGAG-A-G---AA-C-A- 1006
Query 1263 GATCAAATCAGGCGCGAGGATGATAGAAGCGAGACCCTATCTTTTGGAGATTGTCAGAAA 1322
|||||||| |||| ||| | ||||||||| ||||||||||||||||||||| |||||||
Sbjct 1007 GATCAAATTAGGCACGA-G--GATAGAAGCCAGACCCTATCTTTTGGAGATTATCAGAAA 1063
Query 1323 GAAACCGCAATGGGATCATCAGTCCGTGTTAGT-AACAATTATGAGAACTTCAGCCATGA 1381
||| || | ||||||||| |||||||||||| | ||| |||||||||||||||||||||
Sbjct 1064 GAATCCACGATGGGATCAGCAGTCCGTGTTA-TCAACGGTTATGAGAACTTCAGCCATGA 1122
Query 1382 CCCTGCAATTACTAAAGATCCTCTTCATATCGAAGCAGAGGAAAATATGTCTTTTGAATG 1441
|||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1123 CCCTGCAATTGCTAAAGATCCTCCTCATATGGAAGCAGAGGAAAATATGTCTTTTGAATT 1182
Query 1442 TAGAAATCCCCCTTATGCTAGTCCTAGAGTTGATACCTTGCTGGTGCCCAAAATTAAAGA 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1183 TAGAAATCCCCCTTATGCTAGTCCTAGAGTTGATACCTTGCTGGTGCCCAAAAGTAAAGA 1242
Query 1502 TACAAAGACAGCTAAGAAGGGTTCTACAAACACATTTCCTTCAAATGTTAAGTCCTTGTT 1561
||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
Sbjct 1243 TACCAAGACAGCTAAGAAGGGTTCTACAAATACATTTCCTTCAAATGTTAAGTCATTGCT 1302
Query 1562 GTCAACAGGAATCTTTGATGGAGTTACTGTGAAGTACTATTCGTGGTCACGTGAGCAGAG 1621
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1303 GTCAACAGGAATGTTTGATGGGGTTACTGTGAAGTACTATTCGTGGTCACGTGAGGTCAG 1362
Query 1622 AAATCTCAAAGGGATGATAAAGGGGACTGGGTATCTATGTGGTTGCGGCAACTGTAAAC- 1680
|||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1363 AAATCTCAAAGGAATCATAAAGGGGACTGGGTATCTATGTGGTTGCGGCAACTGT-AACT 1421
Query 1681 TTAATAAAGTTCTCAATGCGTATGAATTCGAGCAGCATGCTAATTGCAAGACAAAGCACC 1740
|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1422 TTAATAGAGTTCTTAATGCGTATGAATTCGAGCAGCATGCTAATTGCAAGACAAAGCATC 1481
Query 1741 CAAATAACCACATATACTTTGAAAATGGAAAGACCATTTATGGCGTTGTTCAAGAACTGA 1800
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1482 CAAATAACCACATATACTTTGAGAATGGAAAGACCATTTATGGCGTTGTTCAAGAGCTGA 1541
Query 1801 AGAATACACCTCAGGAGAAGTTGTTTGATGCTATTCAAAATGTTACAGGATCTGACATCA 1860
|||||||||||||||| |||||||| ||||||||||||||||| ||||||||| | ||||
Sbjct 1542 AGAATACACCTCAGGAAAAGTTGTTCGATGCTATTCAAAATGTAACAGGATCTTATATCA 1601
Query 1861 ACCATAAGAATTTCAACACATGGAAAGCTTCATATCACGTTGCTAGACTTGAACTTCAGC 1920
||||||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||
Sbjct 1602 ACCATAAGAATTTCAACACCTGGAAAGCTTCATATCATGTTGCCAGCCTTGAACTTCAGC 1661
Query 1921 GTATCTATGGGAAGGATGATGTCACTTTGGCATCTTGAGAAGACGAGTTATCAACTGGCA 1980
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1662 GTATCTATGGGAAGGATGATGTCACTTTGGCCTCTTGAGAAGACGAGTTATCAACTGGCA 1721
Query 1981 GGCTTTTTGTCGTAAGTGAAGTCTGGGTGAAGTCTAGGTCTCTTACTAAAGTATATAATC 2040
||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| |
Sbjct 1722 GGCTTTTTGTCGTAAGTGATGTCTGGG-GAAGTCTAGTTCTCTTACTAAAGTATATAAAC 1780
Query 2041 TACTGCAAGAACTCCAAGTTCTTAGCTTTTATGAGACTTAATGTAGCGCATTGCTTGCTC 2100
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1781 TACTGCAAGAACTCCAAATTCTTAGCTTTTATGAGACTTTATGTAGCGCATTGCTTGCTC 1840
Query 2101 TTATTCTGGCAAACCAATACTATCAAAAATGttttt 2136
||||||||||||||||||||||||||||||||||||
Sbjct 1841 TTATTCTGGCAAACCAATACTATCAAAAATGTTTTT 1876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80560868175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5