BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13670.1
Length=1318
Score E
Sequences producing significant alignments: (Bits) Value
Ahg350516 jgi|Araly1|350516|fgenesh1_pg.C_scaffold_6001109 1773 0.0
Ahg488185 jgi|Araly1|488185|fgenesh2_kg.6__1319__AT5G13660.1 147 3e-34
> Ahg350516 jgi|Araly1|350516|fgenesh1_pg.C_scaffold_6001109
Length=1140
Score = 1773 bits (960), Expect = 0.0
Identities = 1081/1141 (95%), Gaps = 2/1141 (0%)
Strand=Plus/Plus
Query 57 ATGAAGTTTGAGAGAGCAAGGCCATTCATAGCCATTGTTTTCATACAATGTTTGTACGCT 116
|||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 1 ATGAAGTTTGAGAGAGCAAGACCATTCATAGCCATTGTCTTCATACAGTGTTTGTACGCA 60
Query 117 TTGATGTCTATAGTAGCAAAATTAGCTTTGAACAAGGGAATGAGCCCTCACGTCTTAGTT 176
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 CTGATGTCTATAGTAGCAAAATTAGCTTTGAACGCGGGAATGAGCCCTCACGTCTTAGTT 120
Query 177 GCTTACCGAATGGCAGTTGCTTCCGCTCTCATTACGCCTTTCGCTCTCATCCTCGAGAGG 236
||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||||
Sbjct 121 GCTTACCGAATGGCAGTTGCTTCAGCTCTCATTACGCCTTTCGCCCTCGTCCTTGAGAGG 180
Query 237 AACACAAGACCAAAGTTGACCTTCAAGATTTTGTTACAAATAGCCATCCTTAGTTTATTT 296
||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AACTCAAGACCAAGGATGACCTTCAAGATTTTGTTACAAATAGCCATCCTTAGTTTATTT 240
Query 297 GAGCCTGTGGTCGAACAAAACCTGTACTACTCAGGGATGAAACTTACCACTGCCACATTC 356
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 GAGCCTGTGGTCGAACAAAACCTGTATTACTCAGGGATGAAACTTACCACTGCCACATTC 300
Query 357 ACATCAGCTTTGTGCAATGCTCTTCCTGCTATGACATTCATAATGGCCTGCGTTTTCAAG 416
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 301 ACATCAGCTTTGTGCAATGCACTTCCTGCTATGACATTCATTATGGCCTGCGTTTTCAAA 360
Query 417 CTCGAGAAGGTGACAATCGAAAGACGCCACAGCCAGGCAAAGCTGGTGGGAACCATGGTG 476
|||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||
Sbjct 361 CTCGAGAAGGTGACAATCGAAAGACGTCACAGCCAGGCAAAACTGGTGGGAACCGTGGTG 420
Query 477 GCTATTGGGGGAGCAATGCTCATGACATTCGTGAAAGGGAATGTCATTGAGCTGCCTTGG 536
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 421 GCTATTGGAGGAGCAATGCTCATGACATTCGTGAAAGGGAATGTCATTGTGCTGCCTTGG 480
Query 537 ACAAGCAACTCAAGGGGTCTTAATGGGCACACACACGCTATGAGGATTCCAAAGCAGGCG 596
||||||||||||||||| ||| ||| ||| |||| ||||||| ||||||||||||||
Sbjct 481 ACAAGCAACTCAAGGGGCCTTGATGCGCATTCACATGCTATGATGATTCCAAAGCAGGAA 540
Query 597 GATATAGCAAGAGGATCAATTATGCTTGTAGCAAGCTGCTTCAGTTGGTCATGTTACATC 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GATATAGCAAGAGGATCAATTATGCTTGTAGCAAGCTGCTTCAGTTGGTCATGTTACATC 600
Query 657 ATTTTACAGGCAAAGATTCTGGCTCAATATAAAGCTGAGCTCTCGCTAACAGCTCTTATG 716
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 601 ATTTTACAGGCAAAGATTCTGGCTCAATATCAAGCTGAGCTCTCGCTAACAGCTCTTATG 660
Query 717 TGCATTATGGGGATGTTGGAGGCTACTGTTATGGGATTGATATGGGAAAGGAAAAACATG 776
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 661 TGCATTATGGGGATGTTGGAGGCTACTGTTATGGGACTGCTATGGGAAAGGAAAAACATG 720
Query 777 TCGGTCTGGAAAATCAACCCGGACGTGACGCTTTTAGCTTCAATCTACGGAGGACTAGTC 836
|||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||
Sbjct 721 TCGGTCTGGAAAATCAACCCGGACGTTACGCTTTTAGCTTCAATATACGGGGGACTTGTC 780
Query 837 TCAGGGTTAGCATACTATGTTATTGGATGGGCGTCAAAGGAGAGAGGGCCTGTGTTTGTG 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TCAGGGTTAGCATACTATGTTATTGGATGGGCGTCAAAGGAGAGAGGGCCTGTGTTTGTG 840
Query 897 AGCGCGTTTAACCCGCTCAGCATGGTTCTCGTTGCTATTCTGAGCACCTTTGTTTTCTTG 956
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||
Sbjct 841 AGCGCGTTTAACCCGCTCAGCATGGTTCTCGTTGCTATTCTGAGTACCTTTATTTTCATG 900
Query 957 GAAAAAGTGTACGTAGGAAGGGTTATTGGGTCAGTTGTCATTGTCATTGGGATATATTTG 1016
|||||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 901 GAAAAAATGTACCTAGGAAGGGTTGTTGGGTCAGTTGTCATTGTCATTGGTATATATTTG 960
Query 1017 GTATTATGGGGTAAAAGCAAGGACAAAGGAGGGATGCTTCAACCAAACGCTGGATGCGCA 1076
||| |||||||||||||||||||||||||||||| ||||||||||||| | |||||||||
Sbjct 961 GTACTATGGGGTAAAAGCAAGGACAAAGGAGGGAAGCTTCAACCAAACACCGGATGCGCA 1020
Query 1077 GAGACTGTGGTAAAGATTGACCAACAGAAGGTTCCGACGCCTGATAATAACCAAGTAGTA 1136
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1021 GAGACTGTGGTAAAGATCGACCAACAGAAGGTTCCGACGCCTGATAATAACAAAGTAGTA 1080
Query 1137 TCTATCAGTTACCATTTAATGATCCCGAAGGCAGCAGCTCGGTCTCAAGAGT-GAGTCTA 1195
|| | ||||||||| ||||||||||| |||| ||||||||| |||||||||| | |||||
Sbjct 1081 TCCACCAGTTACCAGTTAATGATCCCAAAGGTAGCAGCTCGATCTCAAGAGTCG-GTCTA 1139
Query 1196 A 1196
|
Sbjct 1140 A 1140
> Ahg488185 jgi|Araly1|488185|fgenesh2_kg.6__1319__AT5G13660.1
Length=1876
Score = 147 bits (79), Expect = 3e-34
Identities = 83/85 (98%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 1234 aaaaaCATTTTTGATAGTATTGGTTTGCCAGAATAAGAGCAAGCAATGCGCTACATTAAG 1293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1876 AAAAACATTTTTGATAGTATTGGTTTGCCAGAATAAGAGCAAGCAATGCGCTACATAAAG 1817
Query 1294 TCTCATAAAAGCTAAGAACTTGGAG 1318
|||||||||||||||||| ||||||
Sbjct 1816 TCTCATAAAAGCTAAGAATTTGGAG 1792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49292931681
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5