BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13720.1
Length=1070
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488193 jgi|Araly1|488193|fgenesh2_kg.6__1327__AT5G13720.1 1439 0.0
> Ahg488193 jgi|Araly1|488193|fgenesh2_kg.6__1327__AT5G13720.1
Length=1011
Score = 1439 bits (779), Expect = 0.0
Identities = 919/986 (93%), Gaps = 12/986 (1%)
Strand=Plus/Plus
Query 41 GAAAAACCAACTTCAACCACACACCACATATTTCTCTCCCGCCTAATCCTCCGCGTTCCC 100
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAAAAACAACTTCATCCACACACCACATATTTCTCTCCCGCCTAATCCTCCGCGTTCCC 60
Query 101 AAGCCGACGCGCCGATCTTTCTTCTACTACTTGTCCTCCGGCAATAACAAACTAAC-CAT 159
|||||||| ||| ||||||||||||||||||||||||||||| | | || | ||| | |
Sbjct 61 CAGCCGACGGGCCTATCTTTCTTCTACTACTTGTCCTCCGGCACTTATAACCAAACTC-T 119
Query 160 TTCGAAAAGTAATTATCTATGGCTCTCTCCTCGTTGATCTCAGCCACTCCGCTCTCCCTT 219
|| || | || |||||||||||||||| |||||||||||||||||||||| ||||| ||
Sbjct 120 TTAGACTACTAGTTATCTATGGCTCTCTGCTCGTTGATCTCAGCCACTCCGATCTCCGTT 179
Query 220 TCGGTGCCGAGATATCTCGTGTTACCCACGCGCCGCCGTTTCCACTTGCCGTTAGCAACT 279
|||||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||||
Sbjct 180 TCGGTGCCGAGATACCTCGTCTTACCCACGCGCCGCCGTTTTCACATGCCGTTAGCAACT 239
Query 280 CTTGACTCATCG--C-CTCCAGAGTCATCCGCATCATCATCGATTCCTACCTCGATTCCC 336
|||| ||||||| | |||| |||||||| ||||||||||||| |||||||||||||||
Sbjct 240 CTTGGCTCATCGTCCTCTCCGGAGTCATCGGCATCATCATCGACCCCTACCTCGATTCCC 299
Query 337 GTCAACGGAAACACGTTACCTAGTTCTTA-CG--GAACTCGCAAAGACGACAGCCCGTTT 393
|||||||| |||||||||||||||||||| || ||||| ||||||| ||||||| |||
Sbjct 300 GTCAACGGGAACACGTTACCTAGTTCTTACCGAACAACTCCCAAAGACAACAGCCCATTT 359
Query 394 GCTCAGTTCTTTCGCTCCACCGAATCCAACGTTGAGAGGATAATATTTGATTTCCGGTTC 453
||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 GCTAAGTTCTTTCGTTCCACCGAAGCCAACGTTGAGAGGATAATATTTGATTTCCGGTTC 419
Query 454 CTAGCGCTTTTGGCAGTAGGAGGTTCGCTGGCTGGTTCGCTACTCTGCTTTCTCAATGGG 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTAGCGCTTTTGGCAGTAGGAGGTTCGCTGGCTGGTTCGCTACTCTGCTTTCTCAATGGG 479
Query 514 TGTGTCTACATAGTGGAGGCATATAAAGTCTACTGGACTAACTGTTCAAAAGGCATCCAT 573
|||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 480 TGTGTCTATATAGTGGAGGCATATAAAGTCTACTGGACTAACTGTGCAAAAGGAATCCAT 539
Query 574 ACCGGCCAAATGGTTTTACGCCTAGTCGAAGCTATCGATGTTTATCTAGCTGGGACTGTG 633
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 ACCGGCCAAATGGTTTTACGCCTAGTCGAAGCTATCGATGTTTATCTGGCTGGGACTGTT 599
Query 634 ATGTTAATATTTAGTATGGGTTTGTATGGACTCTTCATCAGTCACTCGCCTCATGATGTT 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATGTTAATATTTAGTATGGGTTTGTATGGACTCTTCATCAGTCACTCGCCTCATGATGTT 659
Query 694 CCACCGGAATCCGATCGTGCCCTTAGATCCTCTTCCCTCTTTGGTATGTTTGCAATGAAG 753
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 660 CCTCCGGAATCCGATCGTGCCCTTAGATCCTCTTCTCTCTTTGGTATGTTTGCAATGAAG 719
Query 754 GAGAGACCAAAATGGATGAAGATCAGCTCACTTGATGAGCTTAAAACCAAAGTGGGACAT 813
||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 720 GAGAGGCCGAAATGGATGAAGATTAGCTCACTTGATGAGCTGAAAACCAAAGTGGGACAT 779
Query 814 GTCATTGTTATGATTCTGCTAGTGAAGATGTTCGAGAGAAGCAAGATGGTTACTATCGCC 873
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GTCATTGTTATGATTCTTCTAGTGAAGATGTTCGAGAGAAGCAAGATGGTTACTATCGCC 839
Query 874 ACCGGTCTAGATTTGCTTAGTTATTCCGTTTGCATCTTCTTGTCCTCTGCTTCTCTGTAT 933
|||||||| |||||||| |||||||||||||||||||||||||| |||||||| || |||
Sbjct 840 ACCGGTCTTGATTTGCTCAGTTATTCCGTTTGCATCTTCTTGTCTTCTGCTTCACTTTAT 899
Query 934 ATCCTCCATAATCTCCACAAAGGAGAGACATGAACCCAT--ATTATGTACAGACCCAATA 991
|||||||||||||||||||||||||||||||||| |||| || |||||||||||||||
Sbjct 900 ATCCTCCATAATCTCCACAAAGGAGAGACATGAATCCATTCAT-ATGTACAGACCCAAT- 957
Query 992 TATCCAATATATGTGTTTACTCTGtt 1017
|||||||||||| ||||| |||||||
Sbjct 958 TATCCAATATATATGTTTGCTCTGTT 983
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39838448265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5