BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13730.1
Length=1375
Score E
Sequences producing significant alignments: (Bits) Value
Ahg940838 jgi|Araly1|940838|scaffold_601382.1 1110 0.0
> Ahg940838 jgi|Araly1|940838|scaffold_601382.1
Length=867
Score = 1110 bits (601), Expect = 0.0
Identities = 655/681 (96%), Gaps = 3/681 (0%)
Strand=Plus/Plus
Query 683 GGTACCAAGGCAAAGGTTTGAATTTGCAAGACCTTATTCAGGAAGGAAGCATAGGGCTGC 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 177 GGTACCAAGGCAAAGGTTTGAATTTGCAAGACCTTATTCAGGAAGGAAGCATAGGACTGC 236
Query 743 TTCGTGGAGCTGAGAGATTTGATCCCGACCGAGGATACAAACTATCAACTTATGTCTACT 802
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 237 TTCGTGGAGCTGAGAGATTTGATCCCGACAGAGGATACAAACTATCAACTTATGTCTACT 296
Query 803 GGTGGATCAAACAGGCCATCTTAAGGGCTATAGCGCATAAATCTAGACTTGTCAAATTGC 862
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 297 GGTGGATCAAACAGGCCATCTTAAGGGCTATCGCGCATAAATCTAGACTTGTCAAATTGC 356
Query 863 CGGGAAGCATGTGGGAGTTAACGGCAAAAGTTGCAGAAGCTAGTAATGTGTTGACCAGAA 922
||||||||||||||||||| || |||||| ||||||||||||||||||| ||||||||||
Sbjct 357 CGGGAAGCATGTGGGAGTTGACTGCAAAAATTGCAGAAGCTAGTAATGTTTTGACCAGAA 416
Query 923 AACTAAGAAGGCAACCAAGCTGTGAAGAGATTGCAGAGCACCTAAACC-TCAATGTATCC 981
|||||||| |||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 417 AACTAAGACGGCAACCAAGCTCTGAAGAGATTGCAGAGCACCTAAACCTTC-ATGTATCT 475
Query 982 GCGGTTAGACTAGCTGTGGAGCGTAGCAGATCCCCTGTTTCGTTGGACCGAGTCGCGTCT 1041
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 GCGGTTAGACTCGCTGTGGAGCGTAGCAGATCCCCTGTTTCGTTGGACCGAGTCGCGTCT 535
Query 1042 CAAAATGGCCGCATGACATTGCAGGAAATTGTACGGGGACCAGATGAAACAAGGCCAGAG 1101
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 536 CAAAATGGCCGCATGACTTTGCAGGAAATTGTACGGGGACCGGATGAAACAAGGCCAGAG 595
Query 1102 GAGATGGTGAAAAGGGAACACATGAAGCATGAGATTGAGCAACTCTTAGGAAGTCTTACC 1161
|||||||||||||||||||||||||||||||||||||| || || || ||||||||||||
Sbjct 596 GAGATGGTGAAAAGGGAACACATGAAGCATGAGATTGAACAGCTTTTGGGAAGTCTTACC 655
Query 1162 GCTAGAGAATCTCGTGTATTGGGACTTTACTTTGGGCTCAACGGAGAGACTCCTATGTCG 1221
|| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 656 GCGAGAGAATCTCGAGTATTGGGACTCTACTTTGGGCTCAACGGAGAGACTCCTATGTCG 715
Query 1222 TTTGAAGAGATAGGTAAGTCGCTGAAGCTTTCGAGAGAGAGGGTGAGACAAATCAATGGC 1281
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 716 TTTGAAGAGATAGGTAAGTCGTTGAAGCTTTCGAGAGAGAGGGTGAGGCAAATCAATGGC 775
Query 1282 ATTGCTTTGAAGAAGCTACGGAATGTACATAATGTGAATGATTTGAAAATATACTATTCC 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 ATTGCTTTGAAGAAGCTACGGAATGTACATAATGTGAATGATTTGAAAATATACTATTCC 835
Query 1342 TCTAGTGAATAAAAAGCAAAT 1362
|||||||||||||| || |||
Sbjct 836 TCTAGTGAATAAAA-GCGAAT 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51465937950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5