BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13740.1
Length=1912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488195 jgi|Araly1|488195|fgenesh2_kg.6__1329__AT5G13740.1 2531 0.0
> Ahg488195 jgi|Araly1|488195|fgenesh2_kg.6__1329__AT5G13740.1
Length=1873
Score = 2531 bits (1370), Expect = 0.0
Identities = 1628/1749 (93%), Gaps = 31/1749 (2%)
Strand=Plus/Plus
Query 147 TCC-ATTTGTACATATATACGTGACTCATCGTCTTTTTCACTCCCACACGTTCTGCTCCA 205
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 115 TCCAATTTGTACATATATACGTGACTCATCGTCTTTTTCAGTCCCACACGTTCTGCTCCA 174
Query 206 GCGATACTGTGAGAGAATCTCTGTGTGGTTCTGAATTC-TTAGGCTGGAATT--GAATTC 262
||||| || ||||||||||||||||||| || ||| || || || | |||
Sbjct 175 GCGAT--TGAGAGAGAATCTCTGTGTGGTACT-CTTTCATT--TCT-CCTTTCCG-ATTT 227
Query 263 TG--AAATGGCGGAGGAGTACAAGGAAGCGTTGTTGGAGAAGCAGAACTATCACGACGGA 320
|| |||||||||||||||||||||| |||||||||||||||||| | ||||||||||||
Sbjct 228 TGTAAAATGGCGGAGGAGTACAAGGAGGCGTTGTTGGAGAAGCAGCAGTATCACGACGGA 287
Query 321 TGTCCCGGCTGTAAGGTGGAGCAGATGAAGCAGCTCCGGCGAGGATATCCTTACCTCGAG 380
||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 288 TGTCCGGGATGCAAGGTGGAGCAGATGAAGCAGCTCCGGCGAGGATACCCTTACCTCGAG 347
Query 381 CTTTCCTTCGTTTGGATTATCGTCCTCTCCACTTCTCTACCAATTTCCTCACTCTATCCC 440
||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 348 CTTACCTTCGTTTGGATCATCGTCCTCTCCACTTCTCTGCCAATTTCCTCACTCTATCCC 407
Query 441 TTCCTCTACTATATGATTGAGGATTTTGGTGTCGCAAAGACGGAGAAAGATATTGGGTTT 500
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 408 TTCCTCTACTATATGATTGAGGATTTCGGTGTTGCAAAGACGGAGAAAGATATTGGGTTT 467
Query 501 TATGCTGGTTTTGTTGGTTGCTCTTTTATGCTTGGAAGAGCACTGACTTCTGTGTTCTGG 560
|| ||||| ||||| |||||||| |||||||||||||||||| |||| ||||||||||||
Sbjct 468 TACGCTGGATTTGTGGGTTGCTCATTTATGCTTGGAAGAGCATTGACGTCTGTGTTCTGG 527
Query 561 GGAATTGTGGCTGATCGTTATGGAAGAAAACCCATTATACTCTTGGGAACTATCTCAATT 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 GGAATTGTGGCTGATCGTTATGGAAGAAAACCCATTATACTCTTGGGAACTATCTCAATT 587
Query 621 GCAATTTTCAACGCTCTTTTTGGCTTGAGC-TCAAATTTTTGGATGGCAATTGGCACAAG 679
|| ||||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||
Sbjct 588 GCGATTTTCAACGCTCTTTTTGGCTTGAGCGT-AAACTTTTGGATGGCAATTGGCACGAG 646
Query 680 GTTTCTTCTTGGGAGTTTCAACTGTTTGCTTGGAACAATGAAGGCCTATGCATCAGAAAT 739
|||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 647 GTTTCTTCTTGGGAGTTTCAACTGTTTGCTTGGAACCATGAAGGCATATGCATCGGAAAT 706
Query 740 ATTTCGTGATGAATATCAAGCTACCGCAATGTCAGCTGTTAGTACTGCTTGGGGCATTGG 799
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 707 ATTTCGTGATGAATATCAAGCAACAGCAATGTCAGCTGTTAGTACTGCTTGGGGCATTGG 766
Query 800 ACTGATCATTGGCCCTGCTCTTGGTGGTTTTTTAGCTCAGCCGGCAGACAAATATCCAAA 859
|||| |||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 767 ACTGGTCATTGGCCCTGCTCTAGGGGGATTTTTAGCTCAGCCGGCAGACAAATATCCAAA 826
Query 860 TGTGTTCTCCCAAGAATCTC-TTTTTGGCAGATTCCGGTATGCATTGCCTTGCTTTACGA 918
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 827 TGTGTTCTCCCAAGAATC-CATTTTTGGCAGATTCCGGTATGCATTGCCTTGCTTTACGA 885
Query 919 TTTCAGCTTTTGCCTTGCTTGTGACAGTACTATGCTGCTTCATCCCGGAGACACTGCACA 978
| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 886 TATCAGCTTTTGCCTTGGTTGTGACAGTACTATGCTGCTTCATTCCGGAGACACTGCACA 945
Query 979 ATCATAAGCTGGACAGCTTATCACATGATGATTCATACGATATACTTGAAGCTGCATCTC 1038
|||||||||||| |||| |||||||||||| |||||||| |||||||||||||||||||
Sbjct 946 ATCATAAGCTGGGCAGCACATCACATGATGACTCATACGAAATACTTGAAGCTGCATCTC 1005
Query 1039 ATGAATCATCTCCTTCTACCGGGAAGGCAGGAAAAAACGAAAGAAAGGCTTCTCAGTCTC 1098
||||||| || || ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1006 ATGAATC--CT-CTGCTATCGAGAAGGCAGGAAAAAACGAAAGAAAGGCTTCTCAGTCTC 1062
Query 1099 TCTTGAAGAATTGGCCGCTGATGTCATCTATCATTGTGTATTGTGTTCTGTGTCTTCATG 1158
|||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1063 TCTTGAAGAATTGGCCCCTAATGTCATCTATCATTGTGTATTGTGTTCTGTGTCTGCATG 1122
Query 1159 ATACTGCATACTCGGAGATATTTGCACTATGGGCTAACAGTCCAAGGAAGTATGGAGGTC 1218
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1123 ATACTGCATACTCTGAGATATTTGCACTATGGGCTAACAGTCCAAGGAAGTACGGAGGTC 1182
Query 1219 TGAGCTACTCAACGAATGAAGTCGGTACAGTTCTTGCTATCTCAGGTCTCGGCCTATTCT 1278
||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 1183 TGAGCTACTCAACCAATGATGTCGGTACAGTTCTTGCTATATCAGGTCTTGGCCTATTCT 1242
Query 1279 CTTTTCAGGTATTTGTTTATCCTTTGGCTGAGAAACTGCTAGGACCTGTTCTGGTCACCC 1338
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1243 CTTTTCAGGTATTTGTTTATCCGTTCGCTGAGAAACTGCTAGGACCTGTTCTGGTCACCC 1302
Query 1339 GATATGCTGGGGCACTGATGATACCTATACAAATGAGTTATCCATTTATAGCAGGCTTGT 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1303 GATATGCTGGGGCACTGATGATACCTATACAAATGAGTTATCCATTTATAGCAAGCTTAT 1362
Query 1399 CAGGTCTCAGTCTAAGCTTGATGTTAAATTGTGCATCAATCCTCATAAATGT-CTTAAGT 1457
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1363 CAGGTCTCAGTCTAAGCTTGATGTTAAATTGTGCATCAATCCTCATAAATGTGCT-AAGT 1421
Query 1458 GTGTCTGCCATAACCGGCCTGTTGATCCTTCAAAATAGAGCAGTGGATCAGAGCCAAAGA 1517
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1422 GTGTCTGCCATAACCGGCCTGTTGATCCTTCAAAATAAAGCAGTGGATCAAAGCCAAAGA 1481
Query 1518 GGGGCGGCTAATGGAATAGCTATGACTGCGATGTCTCTATTTAAGACAGTTGGACCAGCT 1577
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 1482 GGGGCGGCTAATGGAATAGCTATGACTGCGATGTCTCTCTTTAAAACCGTTGGACCAGCT 1541
Query 1578 GGTGCTGGCATCTTATTTTCTTGGAGTGAGAGGCGACTAAACGCTGCATTTCTACCAGGA 1637
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1542 GGTGCTGGCATCTTATTTTCTTGGAGTGAGAGGCGATTAAACGCTGCATTTCTACCAGGA 1601
Query 1638 TCGCATATGGTATTCTTCGTCTTGAATGTGATAGTAGTGGTCGGAGTAGCTCTGACATTC 1697
||||||||||| ||||||||| ||||||||||||| || || ||||||||||| ||||||
Sbjct 1602 TCGCATATGGTGTTCTTCGTCCTGAATGTGATAGTTGTTGTTGGAGTAGCTCTCACATTC 1661
Query 1698 AAGCCATTTCTAACGACGAGTCGAAGATGAAA-TTCATTTGAATTGGTAAGATAGGGAAT 1756
||||| |||||| ||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1662 AAGCCTTTTCTAGTAACGGGTCGAAGATGAAAATTCATTTGAATTGGTAAGATAGGGAAT 1721
Query 1757 GTATGGACAAGTTGATTCTTTTCATTTCAGATACGAAAGAAACCGGTAATAAAATTTCAC 1816
||||||||| |||||||| ||| ||||||||| | ||||||||| |||||||||||||||
Sbjct 1722 GTATGGACATGTTGATTCATTTAATTTCAGATTCAAAAGAAACCCGTAATAAAATTTCAC 1781
Query 1817 TAACCTTAGGATTTCAGCTCCTTCTATTACTTGTCCTTT--T------GTTTTGCTTTGT 1868
||||||||||||||||||| |||||||| ||||||||| | ||||||||||||
Sbjct 1782 TAACCTTAGGATTTCAGCTTCTTCTATTTGTTGTCCTTTACTCCTTTTGTTTTGCTTTGT 1841
Query 1869 CTGATTATT 1877
|||||||||
Sbjct 1842 CTGATTATT 1850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71838202070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5