BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13750.1
Length=1845
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488196 jgi|Araly1|488196|fgenesh2_kg.6__1330__AT5G13750.1 2242 0.0
> Ahg488196 jgi|Araly1|488196|fgenesh2_kg.6__1330__AT5G13750.1
Length=1774
Score = 2242 bits (1214), Expect = 0.0
Identities = 1449/1560 (93%), Gaps = 25/1560 (2%)
Strand=Plus/Plus
Query 53 GCCCTCATTAAAACACACATCATATCGCCCCCAAAA--TT--TT--GATTTGATT--A-G 103
|||||||||||||| |||||| | ||||||||| || || ||||||||| |
Sbjct 54 GCCCTCATTAAAAC-CACATC----C-CCCCCAAAATTTTGGTTAGGATTTGATTCGATT 107
Query 104 AGAGGTGTGTG---GAAAATGGCGGAAGAGTATGCCGAGTGTTTGCTAGAGAAGAACTTC 160
||||||||||| ||||||||||||||||||| | ||||||||||||||||| || |||
Sbjct 108 AGAGGTGTGTGAAAGAAAATGGCGGAAGAGTATACGGAGTGTTTGCTAGAGAATAAGTTC 167
Query 161 CATGAGGATTGTTCTGGCTGCAAGGTTGATCAGATGAAGAGGCTTCGCCGTGGATTTCCC 220
|||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 168 CATGAGGATTGTCCTGGCTGCAAAGTTGATCAGATGAAGAGGCTTCGCCGAGGATTTCCC 227
Query 221 TTCTGGGAGCTTTTTACCGTTTGGATCATCGTTCTTTGCACCGCTTTGCCCATTTCTTCT 280
|| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 228 TTATGGGAGCTTTTTACCGTTTGGATCATCGTTCTTTGCACTGCTCTGCCCATTTCTTCG 287
Query 281 CTATTCCCCTTTCTCTACTTTATGATTGATGATTTCAACATTGCAAAGAAGGAAGAGGAC 340
|| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 288 CTTTTCCCATTTCTTTACTTTATGATTGATGATTTTAACATTGCAAAGAAGGAAGAGGAC 347
Query 341 ATTGGGTTCTACGCTGGATTTGTTGGTTGCTCTTTCATGCTCGGACGAGCTTTTACATCT 400
||||| ||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 348 ATTGGTTTCTATGCTGGCTTTGTCGGTTGCTCTTTCATGCTCGGACGAGCGTTTACATCT 407
Query 401 GTG-GCATGGGGACTTGTTGCTGATCGTTATGGTAGAAAACCTGTAATCCTCATAGGAAC 459
||| | ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 408 GTGATC-TGGGGACTTGTGGCTGATCGTTATGGTAGAAAACCCGTAATCCTCATTGGAAC 466
Query 460 CGCTTCAGTGGTCGTTTTTAATACTCTGTTTGGCCTAAGTTTAAATTTCTGGATGGCTAT 519
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 467 CGCTTCAGTGGTCATTTTCAATACTCTGTTTGGCCTAAGTTTAAATTTCTGGATGGCCAT 526
Query 520 TATCACAAGATTTTGCCTCGGTAGTTTCAACGGTTTACTTGGTCCTATCAAGGCTTACGC 579
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 527 CATCACAAGATTTTGCCTCGGAAGTTTCAACGGTTTACTTGGCCCTATCAAGGCTTACGC 586
Query 580 AATGGAAATATTCCGTGATGAGTATCAAGGTTTAGCACTCTCAGCAGTTAGTACAGCTTG 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 587 AATGGAAATATTCCGTGATGAGTATCAAGGTTTAGCACTCTCAGCAGTTAGTACAGCATG 646
Query 640 GGGAATTGGACTCATCATTGGCCCTGCTATAGGAGGTTTTCTTGCTCAGCCTGCAAAGCA 699
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 647 GGGAATTGGACTCATCATTGGCCCTGCTATTGGAGGTTTTCTTGCTCAGCCTGCAACGCA 706
Query 700 ATATCCAAGTTTATTCTCACAGGACTCCATTTTTGGCAAATTTCCCTTCTTTTTGCCATG 759
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 707 ATATCCAAGTTTATTCTCACAGGACTCGATTTTTGGCAAATTTCCCTTCTTCTTGCCGTG 766
Query 760 CTTAGCAATATCCGTTTTTGCATTCTTGGTGACCATAGTTTCATCAAGGATTCCGGAAAC 819
||| ||||||||||||||||||||||||||||| ||| |||||| | |||||||||||||
Sbjct 767 CTTTGCAATATCCGTTTTTGCATTCTTGGTGACTATAATTTCATTACGGATTCCGGAAAC 826
Query 820 ATTGCACAATCACAAGTTTAATGATGATGA-G--TCTTATGATGCTCTCAAAGATTTGTC 876
||||||||||||||||| | |||||||||| | |||| |||||||||||||||||||||
Sbjct 827 ATTGCACAATCACAAGTATGATGATGATGATGACTCTTTTGATGCTCTCAAAGATTTGTC 886
Query 877 TGATGACCCTGAATCTAATAAAGTGGCAGAGAGAAATGGAAAAAGTTCTCTCTTGAACAA 936
| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 887 TCATGACCCTGAATCTAACAAAGTGGCAGAGAGAAATGAAAAAAGTTCTCTCTTGAACAA 946
Query 937 CTGGCCATTAATTTCATCTATCATCGTATACTGCGTCTTTTCACTACATGATATGGCTTA 996
||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 947 CTGGCCACTAATTTCATCTATCATCGTCTACTGCATCTTTTCACTACATGATATGGCTTA 1006
Query 997 CACAGAGATCTTTTCATTGTGGGCAAACAGTCCGAGGAAATATGGAGGTTTGGGATACTC 1056
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1007 CACAGAGATCTTTTCATTGTGGGCAAACAGCCCGAGGAAATATGGAGGTTTGGGATACTC 1066
Query 1057 CACTGCAGATGTTGGTTCTGTTCTTGCCTTTTCAGGCTTTGGTCTCCTTATCTTTCAGCT 1116
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1067 TACTGCAGATGTTGGTTCTGTTCTTGCAATTTCAGGCTTTGGTCTTCTTATCTTTCAGCT 1126
Query 1117 TTCGCTCTACTCTTACGCAGAGAGGCTTTTAGGACCTATCATAGTTACACGTATATCTGG 1176
|||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1127 TTCGCTCTACTCTTACGCGGAGAGGCTTTTAGGACCCATCATAGTTACACGAATATCTGG 1186
Query 1177 GAGCCTAGCAATGGTCGTCTTATCATGTTACCCACTAATAGCAAAGTTATCTGGTTTAGC 1236
|| ||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1187 GACCCTGGCAATGGTCATCTTATCATGTTACCCCCTAATAGCAAAGTTATCTGGTTTAGC 1246
Query 1237 CCTTACCGTGACTGTAACTTCTGCATCCGTAGCAAAGAGTGTTTTAGGTACTTCTGCTAT 1296
||||||| || | |||| ||||||||| |||||||||| |||||| |||||||||||||
Sbjct 1247 CCTTACCCTGGCGGTAAATTCTGCATCGGTAGCAAAGAACGTTTTAAGTACTTCTGCTAT 1306
Query 1297 AACTGGATTATTCATCCTTCAAAACAAGGCTGTGAGACAAGACCAAAGAGGAGCAGCTAA 1356
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1307 AACTGGATTATTCATCCTTCAAAACAATGCTGTGAGACAAGACCAAAGAGGAGCAGCTAA 1366
Query 1357 TGGAATTGCCATGACAGCGATGTCTCTTTTCAAAGCCATAGGTCCAGCAGCAGCAGGAAT 1416
||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 1367 TGGGATTGCCATGACAGCGATGTCTCTTTTTAAAGCAATAGGTCCAGCGGCAGCAGGAAT 1426
Query 1417 CATTTTTTCGTGGAGCGAGAAACGTCAGGGTGCTGCTTTTCT-CCCTGGCACCCAAATGG 1475
||||||||| ||||||||||||||||| | ||||||||| || |||||||||||||||||
Sbjct 1427 CATTTTTTCTTGGAGCGAGAAACGTCAAGATGCTGCTTT-CTTCCCTGGCACCCAAATGG 1485
Query 1476 TATTCTTTATACTGAATGTGGTTTTGGCACTTGGAGTTGTATTGACATTCAAACCATTTC 1535
|||||||||| ||||||||||| ||||||||||||||| |||||||||||||||| ||||
Sbjct 1486 TATTCTTTATCCTGAATGTGGTCTTGGCACTTGGAGTTCTATTGACATTCAAACCGTTTC 1545
Query 1536 TAGCTGAAACACAACAGTAGAAAATGATGAAGATTTTGATGGTATTCAAATTACATAATC 1595
||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 1546 TAGCTGAAACACAACAGTAGAAAGTGTTGAAGATTTTGATGGTATTCAAATTACATCATC 1605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69286155655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5