BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G13760.1 Length=2168 Score E Sequences producing significant alignments: (Bits) Value Ahg488199 jgi|Araly1|488199|fgenesh2_kg.6__1333__AT5G13760.1 2867 0.0 > Ahg488199 jgi|Araly1|488199|fgenesh2_kg.6__1333__AT5G13760.1 Length=1972 Score = 2867 bits (1552), Expect = 0.0 Identities = 1742/1832 (95%), Gaps = 19/1832 (1%) Strand=Plus/Plus Query 13 TTTATTTTGCCAAACATTCTAAAGACGACAGATAGACGACCGCCGTCGCCGGAAAGTGAC 72 ||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2 TTTTTTTTGCAAAACATTCCAAAGACGACAGATAGACGACCGCCGTCGCCGGAAAGTGAC 61 Query 73 GTCACCAAACCTGTCAATGGGTGCAACAGAGCCCGCGGTGGTggagagagagaggaaaga 132 |||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 62 GTCACCAAACTTGTCAATGGGTGCCACTGAGCCCGCGGTGGTGGAGAGAGAGAGGAAAG- 120 Query 133 aaaatcagagaagcaaagagaagtc-aaggcagtggaagagggaggaggagaagaagaaT 191 ||| |||||||||||||||||| | |||||||| | | |||||| || |||||||| Sbjct 121 -AAA-CAGAGAAGCAAAGAGAAG-CAAAGGCAGT-G--G-TGGAGGA--AGGAGAAGAAT 171 Query 192 CAAAGGATAAAGATGAAATAAGTCATCATAGATTTTTGGCGAGCTTGAACAGATTAAACC 251 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 172 CAAAGGATAAAGATGAAATCAGTCATCATAGATTTTTGGCGAGCTTGAACAGATTAAACC 231 Query 252 CAACTAACCCTCTTAGGATCATTGTTAATGGCGGCTCTAGATTCACTACTCCTCCGCCTC 311 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 232 CAACTAACCCTCTTAGGATCATTGTTAATGGCGGCTCTAGATTCACTACGCCTCCGCCTC 291 Query 312 CTAATCTCGCCCAACCACTCCGATCTTCCTCTAGACAGCCTCCTCCGCCGCCACCACGGC 371 ||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||| Sbjct 292 CTAATCTCGCCCAACCAATCCGATCTTCCTCTAGATATCCTCCTCCGCCGCCACCACGGC 351 Query 372 CGCAGACGCCTCCTACTTTCG-TGCCAGAAGAAACTCAGCCACAGACTCCTCCGCCGCCA 430 |||||||||||||| |||||| | ||||||||| ||||||| ||||| ||||||||| || Sbjct 352 CGCAGACGCCTCCTGCTTTCGCT-CCAGAAGAACCTCAGCCTCAGACCCCTCCGCCGTCA 410 Query 431 AATCAACATCAAACTCGTTCCATCTTCACACCTACCCCTCAACAAACGTTGGCATCATTG 490 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 411 AATCAACATCAAACTCGTTCCATCTTCACACCAACCCCTCAACAAACGTTGGCATCATTG 470 Query 491 AATTCAACAAAGTACACAAACAAGTTCTTTCTGCTGCTCTTCATCTTTCACAAGGTTGTG 550 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 471 AATTCCACAAAGTACACAAACAAGTTCTTTCTGCTGCTCTTCATCTTTCACAAGGTTGTG 530 Query 551 GCTATTGGGTTTGTAGGCTTCCTTGTCTTCAGAGGCGTTCAAGGTCTAATTGGATCAAAT 610 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 531 GCTATTGGGTTTGTAGGCTTCCTTGTCTTCAGAGGCGTCCAAGGTCTAATTGGATCCAAT 590 Query 611 GGTAGCGTCAAAAGGAAAGAGAAAAAGATCCTCAGATTCTTACTTCCACAAGTCGAAGCT 670 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 591 GGTAGCGTCAAAAGGAAAGAGAAAAAGATCCTCAGATTTTTACTTCCACAAGTCGAAGCT 650 Query 671 GCATCGCTCTTGAGCATCATTCTTGCATTCCTTTGGCAAATGGCATTCAGGATTTGGCCT 730 |||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||| Sbjct 651 GCATCGCTCTTGAGCATCATTCTTGCATTCCTATGGCAGATGGCATTCAGGCTTTGGCCT 710 Query 731 GATTTCATGATTCACTTCATACTTTGGAGTACGTTTTTGATGTCTTTATCCTCAGGAATC 790 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 711 GATTTCATGATTCACTTCATACTTTGGAGTACCTTTTTGATGTCTCTATCCTCAGGAATC 770 Query 791 CTCTTACTGTGTTTCCAGATGCCAGCCACTGATGCTGTTGGGGTTTGCCTCATTGCCTTC 850 |||||||||||||||||||||||| | || ||||||||||||||||||||||| || ||| Sbjct 771 CTCTTACTGTGTTTCCAGATGCCAACTACCGATGCTGTTGGGGTTTGCCTCATCGCGTTC 830 Query 851 TCAATTGGCAATGGTTTATATGCTTGCTGGGTCACTCGTAGAATCAAGTTCTGTTCTAAG 910 |||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||| Sbjct 831 TCAATTGGCAATGGTTTATATGCTTGCTGGGTCACTCGCAGAATCAAATTTTGTTCTAAG 890 Query 911 ATTTTGGTCAAGTCGTTAGAACCTGTTTCCAAGTTCTCGGATTTGAATTTGCCCACCTAC 970 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 891 ATTTTGGTCAAGTCGTTAGAACCTGTCTCCAAGTTCTCGGATTTGAATTTGCCCACCTAC 950 Query 971 TACATGCTAGCTGCTGGTTTCCTCTGGATGTCTATGTGGATTTTCGGTGTCATCGGTGCC 1030 ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 951 TACATGCTAGCTGCTGGTTTCCTCTGGATGTCTCTTTGGATTTTCGGTGTCATCGGTGCC 1010 Query 1031 TTGAACTTCTATTTTCCGCCACTTGTGATTATTGGTTTGGTGTTAAGTCTGGCTTGGACG 1090 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1011 TTGAACTTCTATTTTCCGCCACTTGTGATTATTGGTTTGGTGTTAAGCCTGGCTTGGACG 1070 Query 1091 ACAGAAGTGATGAGGAATATTGTTAATCTAACTGTGAGCCGGGTCATTGCTTTGTACTAT 1150 |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct 1071 ACAGAAGTGATGAGGAATGTTGTTAATCTAACTGTGAGTCGGGTCATTGCTTTGTACTAT 1130 Query 1151 CTTAGGGGAATGCAGTCTAGTACCAGGTTTAGTTTCCAAAGGGCCTTGTCTCGTAACCTC 1210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1131 CTTAGGGGAATGCAGTCTAGTACCAGGTTTAGTTTCCAAAGGGCCTTGTCTCGTAACCTC 1190 Query 1211 GGGAGCGCGTGTTTAGGATCTTTGTTTGTTCCAACAATAGAAGCCTTAAGAATCTTGGCA 1270 ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1191 GGGAGTGCATGTTTGGGATCTTTGTTTGTTCCAACAATAGAAGCCTTAAGAATCTTGGCA 1250 Query 1271 AGAGGATTAAATTTGCTAAAGGGTGAAGATGAGTTCATGTTTTGCTGCGCTAATTGCTGT 1330 |||||| | |||||||| ||||||||||| ||||| |||||||||||||||||||||||| Sbjct 1251 AGAGGACTGAATTTGCTCAAGGGTGAAGACGAGTTTATGTTTTGCTGCGCTAATTGCTGT 1310 Query 1331 CTCAGACTCATGGACTTCATATTTGAACATGGCAATGGCTGGGCCTTTGTACAGATAGCG 1390 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1311 CTCAGACTCATGGACTTCATATTCGAACATGGCAATGGCTGGGCCTTTGTACAGATAGCG 1370 Query 1391 GCTTATGGGAAAGGATTTGTGAGGGCATCGCAAGACACATGGAAACTGTTTGAGGATGAA 1450 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1371 GCTTATGGGAAAGGATTTGTGAGGGCGTCGCAAGACACATGGAAACTGTTTGAGGATGAA 1430 Query 1451 GATATGGTTGAAATAGTAGATGCAGACATAACAAGCTCCATATGCTTCCTTACAGGCATC 1510 |||||||||||||| |||||||||||||||||||||||||| |||||||| || |||||| Sbjct 1431 GATATGGTTGAAATCGTAGATGCAGACATAACAAGCTCCATTTGCTTCCTCACGGGCATC 1490 Query 1511 TGCAGCGGCTGCGTTTGTTTAATTGTCGCAGCCGCTTGGACTCACACAGTTTACAAACCT 1570 |||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||| Sbjct 1491 TGCAGCGGCTGCGTCTGTTTAATTGCCGCAGCCGCTTGGACTCATACAGTTTACAAACCT 1550 Query 1571 TTTACAGCCACCATCTCTTTACTTGCCTTCTTCATTGGATACCTCATGACCAGGATCTCT 1630 ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 1551 TTTACAGCCACCATCTCCTTACTTGCCTTCTTCATTGGGTACCTCATGACCAGGATCTCA 1610 Query 1631 ATGGCATTGCCTCACGCCTGCGTAGGTTGCTACTACACGTGCTATGCCGAAAATCCGGAA 1690 |||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 1611 ATGGCATTGCCTCAAGCCTGCGTAGGTTGCTACTACATGTGCTACGCCGAAAATCCGGAA 1670 Query 1691 AGCAGATTCTTCGAAGACAAAGTGATAAAAACTAGGCAAGATATGATCAAAAGTGGCCGT 1750 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1671 AGCAGATTCTTCGAAGACAAAGTGATAAAAACTAGGCAAGATATGATCAAAAGTGGCCGT 1730 Query 1751 GTTGCCGTTACCAGTACCACCCCTAGAGTTCGCCGTGCTCTAGCTTAGCCTGATCATCtt 1810 ||||| || | | ||||||||||||||||||||||||||||||||||| | |||| Sbjct 1731 GTTGCTGT--C-A---CCACCCCTAGAGTTCGCCGTGCTCTAGCTTAGCCTTCTTATCTC 1784 Query 1811 tttttCCTTGGTGCTAAATTTTCAGAATGAAA 1842 ||||||||| |||||||||||||||||||||| Sbjct 1785 TTTTTCCTTCGTGCTAAATTTTCAGAATGAAA 1816 Score = 58.4 bits (31), Expect = 2e-07 Identities = 36/38 (95%), Gaps = 2/38 (5%) Strand=Plus/Plus Query 2039 GTT-GTTGTTGAGACCCCTCAATTACTTTCTGTACATA 2075 ||| ||| |||||||||||||||||||||||||||||| Sbjct 1936 GTTGGTT-TTGAGACCCCTCAATTACTTTCTGTACATA 1972 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81589304790 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5