BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13760.1
Length=2168
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488199 jgi|Araly1|488199|fgenesh2_kg.6__1333__AT5G13760.1 2867 0.0
> Ahg488199 jgi|Araly1|488199|fgenesh2_kg.6__1333__AT5G13760.1
Length=1972
Score = 2867 bits (1552), Expect = 0.0
Identities = 1742/1832 (95%), Gaps = 19/1832 (1%)
Strand=Plus/Plus
Query 13 TTTATTTTGCCAAACATTCTAAAGACGACAGATAGACGACCGCCGTCGCCGGAAAGTGAC 72
||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TTTTTTTTGCAAAACATTCCAAAGACGACAGATAGACGACCGCCGTCGCCGGAAAGTGAC 61
Query 73 GTCACCAAACCTGTCAATGGGTGCAACAGAGCCCGCGGTGGTggagagagagaggaaaga 132
|||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 62 GTCACCAAACTTGTCAATGGGTGCCACTGAGCCCGCGGTGGTGGAGAGAGAGAGGAAAG- 120
Query 133 aaaatcagagaagcaaagagaagtc-aaggcagtggaagagggaggaggagaagaagaaT 191
||| |||||||||||||||||| | |||||||| | | |||||| || ||||||||
Sbjct 121 -AAA-CAGAGAAGCAAAGAGAAG-CAAAGGCAGT-G--G-TGGAGGA--AGGAGAAGAAT 171
Query 192 CAAAGGATAAAGATGAAATAAGTCATCATAGATTTTTGGCGAGCTTGAACAGATTAAACC 251
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 172 CAAAGGATAAAGATGAAATCAGTCATCATAGATTTTTGGCGAGCTTGAACAGATTAAACC 231
Query 252 CAACTAACCCTCTTAGGATCATTGTTAATGGCGGCTCTAGATTCACTACTCCTCCGCCTC 311
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 232 CAACTAACCCTCTTAGGATCATTGTTAATGGCGGCTCTAGATTCACTACGCCTCCGCCTC 291
Query 312 CTAATCTCGCCCAACCACTCCGATCTTCCTCTAGACAGCCTCCTCCGCCGCCACCACGGC 371
||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||
Sbjct 292 CTAATCTCGCCCAACCAATCCGATCTTCCTCTAGATATCCTCCTCCGCCGCCACCACGGC 351
Query 372 CGCAGACGCCTCCTACTTTCG-TGCCAGAAGAAACTCAGCCACAGACTCCTCCGCCGCCA 430
|||||||||||||| |||||| | ||||||||| ||||||| ||||| ||||||||| ||
Sbjct 352 CGCAGACGCCTCCTGCTTTCGCT-CCAGAAGAACCTCAGCCTCAGACCCCTCCGCCGTCA 410
Query 431 AATCAACATCAAACTCGTTCCATCTTCACACCTACCCCTCAACAAACGTTGGCATCATTG 490
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 411 AATCAACATCAAACTCGTTCCATCTTCACACCAACCCCTCAACAAACGTTGGCATCATTG 470
Query 491 AATTCAACAAAGTACACAAACAAGTTCTTTCTGCTGCTCTTCATCTTTCACAAGGTTGTG 550
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 AATTCCACAAAGTACACAAACAAGTTCTTTCTGCTGCTCTTCATCTTTCACAAGGTTGTG 530
Query 551 GCTATTGGGTTTGTAGGCTTCCTTGTCTTCAGAGGCGTTCAAGGTCTAATTGGATCAAAT 610
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 531 GCTATTGGGTTTGTAGGCTTCCTTGTCTTCAGAGGCGTCCAAGGTCTAATTGGATCCAAT 590
Query 611 GGTAGCGTCAAAAGGAAAGAGAAAAAGATCCTCAGATTCTTACTTCCACAAGTCGAAGCT 670
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 591 GGTAGCGTCAAAAGGAAAGAGAAAAAGATCCTCAGATTTTTACTTCCACAAGTCGAAGCT 650
Query 671 GCATCGCTCTTGAGCATCATTCTTGCATTCCTTTGGCAAATGGCATTCAGGATTTGGCCT 730
|||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||
Sbjct 651 GCATCGCTCTTGAGCATCATTCTTGCATTCCTATGGCAGATGGCATTCAGGCTTTGGCCT 710
Query 731 GATTTCATGATTCACTTCATACTTTGGAGTACGTTTTTGATGTCTTTATCCTCAGGAATC 790
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 711 GATTTCATGATTCACTTCATACTTTGGAGTACCTTTTTGATGTCTCTATCCTCAGGAATC 770
Query 791 CTCTTACTGTGTTTCCAGATGCCAGCCACTGATGCTGTTGGGGTTTGCCTCATTGCCTTC 850
|||||||||||||||||||||||| | || ||||||||||||||||||||||| || |||
Sbjct 771 CTCTTACTGTGTTTCCAGATGCCAACTACCGATGCTGTTGGGGTTTGCCTCATCGCGTTC 830
Query 851 TCAATTGGCAATGGTTTATATGCTTGCTGGGTCACTCGTAGAATCAAGTTCTGTTCTAAG 910
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 831 TCAATTGGCAATGGTTTATATGCTTGCTGGGTCACTCGCAGAATCAAATTTTGTTCTAAG 890
Query 911 ATTTTGGTCAAGTCGTTAGAACCTGTTTCCAAGTTCTCGGATTTGAATTTGCCCACCTAC 970
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 891 ATTTTGGTCAAGTCGTTAGAACCTGTCTCCAAGTTCTCGGATTTGAATTTGCCCACCTAC 950
Query 971 TACATGCTAGCTGCTGGTTTCCTCTGGATGTCTATGTGGATTTTCGGTGTCATCGGTGCC 1030
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 951 TACATGCTAGCTGCTGGTTTCCTCTGGATGTCTCTTTGGATTTTCGGTGTCATCGGTGCC 1010
Query 1031 TTGAACTTCTATTTTCCGCCACTTGTGATTATTGGTTTGGTGTTAAGTCTGGCTTGGACG 1090
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1011 TTGAACTTCTATTTTCCGCCACTTGTGATTATTGGTTTGGTGTTAAGCCTGGCTTGGACG 1070
Query 1091 ACAGAAGTGATGAGGAATATTGTTAATCTAACTGTGAGCCGGGTCATTGCTTTGTACTAT 1150
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1071 ACAGAAGTGATGAGGAATGTTGTTAATCTAACTGTGAGTCGGGTCATTGCTTTGTACTAT 1130
Query 1151 CTTAGGGGAATGCAGTCTAGTACCAGGTTTAGTTTCCAAAGGGCCTTGTCTCGTAACCTC 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 CTTAGGGGAATGCAGTCTAGTACCAGGTTTAGTTTCCAAAGGGCCTTGTCTCGTAACCTC 1190
Query 1211 GGGAGCGCGTGTTTAGGATCTTTGTTTGTTCCAACAATAGAAGCCTTAAGAATCTTGGCA 1270
||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 GGGAGTGCATGTTTGGGATCTTTGTTTGTTCCAACAATAGAAGCCTTAAGAATCTTGGCA 1250
Query 1271 AGAGGATTAAATTTGCTAAAGGGTGAAGATGAGTTCATGTTTTGCTGCGCTAATTGCTGT 1330
|||||| | |||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1251 AGAGGACTGAATTTGCTCAAGGGTGAAGACGAGTTTATGTTTTGCTGCGCTAATTGCTGT 1310
Query 1331 CTCAGACTCATGGACTTCATATTTGAACATGGCAATGGCTGGGCCTTTGTACAGATAGCG 1390
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1311 CTCAGACTCATGGACTTCATATTCGAACATGGCAATGGCTGGGCCTTTGTACAGATAGCG 1370
Query 1391 GCTTATGGGAAAGGATTTGTGAGGGCATCGCAAGACACATGGAAACTGTTTGAGGATGAA 1450
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1371 GCTTATGGGAAAGGATTTGTGAGGGCGTCGCAAGACACATGGAAACTGTTTGAGGATGAA 1430
Query 1451 GATATGGTTGAAATAGTAGATGCAGACATAACAAGCTCCATATGCTTCCTTACAGGCATC 1510
|||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 1431 GATATGGTTGAAATCGTAGATGCAGACATAACAAGCTCCATTTGCTTCCTCACGGGCATC 1490
Query 1511 TGCAGCGGCTGCGTTTGTTTAATTGTCGCAGCCGCTTGGACTCACACAGTTTACAAACCT 1570
|||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1491 TGCAGCGGCTGCGTCTGTTTAATTGCCGCAGCCGCTTGGACTCATACAGTTTACAAACCT 1550
Query 1571 TTTACAGCCACCATCTCTTTACTTGCCTTCTTCATTGGATACCTCATGACCAGGATCTCT 1630
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1551 TTTACAGCCACCATCTCCTTACTTGCCTTCTTCATTGGGTACCTCATGACCAGGATCTCA 1610
Query 1631 ATGGCATTGCCTCACGCCTGCGTAGGTTGCTACTACACGTGCTATGCCGAAAATCCGGAA 1690
|||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1611 ATGGCATTGCCTCAAGCCTGCGTAGGTTGCTACTACATGTGCTACGCCGAAAATCCGGAA 1670
Query 1691 AGCAGATTCTTCGAAGACAAAGTGATAAAAACTAGGCAAGATATGATCAAAAGTGGCCGT 1750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 AGCAGATTCTTCGAAGACAAAGTGATAAAAACTAGGCAAGATATGATCAAAAGTGGCCGT 1730
Query 1751 GTTGCCGTTACCAGTACCACCCCTAGAGTTCGCCGTGCTCTAGCTTAGCCTGATCATCtt 1810
||||| || | | ||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1731 GTTGCTGT--C-A---CCACCCCTAGAGTTCGCCGTGCTCTAGCTTAGCCTTCTTATCTC 1784
Query 1811 tttttCCTTGGTGCTAAATTTTCAGAATGAAA 1842
||||||||| ||||||||||||||||||||||
Sbjct 1785 TTTTTCCTTCGTGCTAAATTTTCAGAATGAAA 1816
Score = 58.4 bits (31), Expect = 2e-07
Identities = 36/38 (95%), Gaps = 2/38 (5%)
Strand=Plus/Plus
Query 2039 GTT-GTTGTTGAGACCCCTCAATTACTTTCTGTACATA 2075
||| ||| ||||||||||||||||||||||||||||||
Sbjct 1936 GTTGGTT-TTGAGACCCCTCAATTACTTTCTGTACATA 1972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81589304790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5