BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13780.1
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488201 jgi|Araly1|488201|fgenesh2_kg.6__1335__AT5G13780.1 1459 0.0
> Ahg488201 jgi|Araly1|488201|fgenesh2_kg.6__1335__AT5G13780.1
Length=969
Score = 1459 bits (790), Expect = 0.0
Identities = 919/979 (94%), Gaps = 18/979 (2%)
Strand=Plus/Plus
Query 1 AACCCTAACCCCTCTTTATCCGCGCGAGAG-CAATTGAGCAGCCATGGTTTGCATCAGGC 59
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 AACCCTAACCCCTCTTTATCCGCGCGAGAGAGAATTGAGCAGCCATGGTTTGCATCAGGC 60
Query 60 GAGCGACGGTGGATGATCTGCTGGCGATGCAAGCCTGCAATCTCATGTGTCTTCCTGAGA 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 GAGCGACGGTGGATGATCTGCTGGCGATGCAAGCCTGCAATCTCATGTGTCTTCCCGAGA 120
Query 120 ACTACCAGATGAAGTACTACCTCTACCATATCCTCTCATGGCCTCAGCTTCTCTACGTCG 179
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 ACTACCAGATGAAGTACTACCTCTACCACATCCTCTCATGGCCTCAGCTTCTCTACGTCG 180
Query 180 CCGAGGACTACAATGGTCGCATCGTTGGCTATGTCTTGGCTAAGATGGAGGAAGAGAGCA 239
||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 181 CCGAGGACTACAATGGTCGCATCGTTGGCTACGTGTTGGCCAAGATGGAGGAAGAGAGCA 240
Query 240 ACGAGTGCCACGGCCACATCACTTCTCTCGCCGTTCTTCGTACCCATCGCAAGCTCGGTC 299
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACGAGTGCCACGGCCATATCACTTCTCTCGCCGTTCTTCGTACCCATCGCAAGCTCGGTC 300
Query 300 TCGCCACTAAGCTCATGACCGCCGCTCAAGCTGCCATGGAACAGGTTTACGAGGCTGAGT 359
|||||||||||||||||||||||||||| || || |||||||||||||||||||| ||||
Sbjct 301 TCGCCACTAAGCTCATGACCGCCGCTCAGGCAGCTATGGAACAGGTTTACGAGGCAGAGT 360
Query 360 ATGTTTCGTTGCATGTGAGGAGAAGTAACCGAGCAGCATTCAATCTATACACTGAGACAT 419
|||||||| |||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 361 ATGTTTCGCTGCACGTGAGGAGAAGTAACCGAGCAGCATTCAATCTGTACACAGAGACAT 420
Query 420 TAGGCTACAAGATTAATGATGTAGAAGCAAAGTACTACGCCGATGGGGAGGATGCTTATG 479
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 421 TAGGCTACAAGATTAATGATGTAGAAGCAAAGTATTACGCTGATGGGGAGGATGCTTATG 480
Query 480 ACATGCGGAAGAATCTCAAGGGGAAGCAGAACCATCACCACGCCCACGGTCATCATCATC 539
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 481 ACATGCGGAAGAATCTCAAGGGGAAGCAGAACCATCACCATGCCCACGGTCATCA-C--C 537
Query 540 ACCATGGAGGAGGATGTTGTTCTGGTGATGCAAAAGTTGTAGAAACAGCTCAAGCCGTAG 599
|||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 538 ACCATGGAGGTGGATGCTGTTCAGGTGATGCAAAAGTTGTAGAAACAGCTCAAGCCGTAG 597
Query 600 ATGGTAAAGCAGTTTCCAAATGAGAT-TCGAAAGCAGATAATTATGAGTATATTGAGGTG 658
| | |||||||||||| || ||| | | |||| ||| ||||||||||||||||||||||
Sbjct 598 ACGCTAAAGCAGTTTCGAAGTGAAACAT-GAAAACAGGTAATTATGAGTATATTGAGGTG 656
Query 659 GGTTCACTGGCTCGCTCTAGTACTTCTCACTATTT-CCATTCATATGATTCCGAGTGACA 717
||||| |||||||||||||||||| |||||||||| |||||||||||||| || ||||||
Sbjct 657 GGTTCGCTGGCTCGCTCTAGTACTGCTCACTATTTTCCATTCATATGATTTCGTGTGACA 716
Query 718 AA--TACATTTGGTGACCACTCTGTGTTACTCCTTTGTCTTTCTTTGGTTGTATTGAAAA 775
|| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 717 AAAATACATTTGGTGGCCACTCTGTGTTACTCCTTAGTCTTTCTTTGGTTGTATTGAAA- 775
Query 776 TTTAGCCGTTCCtttttt-tGATGTATCAT-TTT-GGAAATTCCAAGCTTTCATTAAGGC 832
|||||||||| |||||| | |||||| || ||| |||||||||||||||||||||||||
Sbjct 776 TTTAGCCGTTTTTTTTTTCT-ATGTATTATGTTTTGGAAATTCCAAGCTTTCATTAAGGC 834
Query 833 TTTACAACTTAAGCTGGAAATCTTCTATTTGCAAGATAGCAGATCTCTATTGGCAATATA 892
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TTTACAACTTCAGCTGGAAATCTTCTATTTGCAAGATAGCAGATCTCTATTGGCAATATA 894
Query 893 GTACATTTAATTACAAGAAAAATAATCTTGGCTTGTACAGTTTTCCCTTTCAACTTAAAG 952
||||||||||||||| ||||| | |||||||||||||||||| ||||||||||||||||
Sbjct 895 TTACATTTAATTACAA-AAAAA-A-TCTTGGCTTGTACAGTTT-CCCTTTCAACTTAAAG 950
Query 953 TTCCTGTGTTCTTTGTATT 971
||| ||||||||| |||||
Sbjct 951 TTCTTGTGTTCTTCGTATT 969
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36140525316
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5