BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G13790.1
Length=962
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488202 jgi|Araly1|488202|fgenesh2_kg.6__1336__AT5G13790.1 1301 0.0
Ahg946287 jgi|Araly1|946287|scaffold_702516.1 82.4 6e-15
> Ahg488202 jgi|Araly1|488202|fgenesh2_kg.6__1336__AT5G13790.1
Length=933
Score = 1301 bits (704), Expect = 0.0
Identities = 864/939 (92%), Gaps = 20/939 (2%)
Strand=Plus/Plus
Query 38 GAAAATGGGTCGTGGAAAAATCGAGATAAAGAGGATCGAGAATGCGAATAGCAGACAAGT 97
||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1 GAAGATGGGTCGTGGAAAAATCGAGATTAAGAGGATCGAGAATGCCAATAGCAGACAAGT 60
Query 98 CACTTTTTCCAAGAGGCGTTCTGGGTTACTTAAGAAAGCTCGTGAGCTCTCTGTTCTTTG 157
||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 61 TACTTTCTCCAAGAGGCGTTCTGGGTTGCTTAAGAAAGCTCATGAGCTCTCTGTTCTTTG 120
Query 158 TGATGCTGAAGTTGCTGTCATCGTCTTCTCTAAGTCTGGCAAGCTCTTCGAGTACTCCAG 217
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 TGATGCTGAGGTTGCTGTCATCGTCTTCTCTAAGTCTGGCAAGCTCTTCGAGTTCTCCAG 180
Query 218 TACTGGAATGAAGCAAACACTTTCCAGATACGGTAATCACCAGAGTTCTTCAGCTTCTAA 277
||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 181 TACTGGAATGAAGAAAACACTTTCGAGATACGGCAATCACCAGAGTTCTTCAGCTTCTAA 240
Query 278 AGCAGAGGAGGATTGTGCAGAGGTGGATATTTTAAAGGATCAACTTTCAAAGCTTCAAGA 337
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 241 AGCAGAGGAGGATTGTGCAGAGGTGGATCTTTTAAAGGATGAACTTTCAAAGCTTCAAGA 300
Query 338 GAAACATTTACAACTGCAGGGCAAGGGCTTGAATCCTCTGACCTTTAAAGAGCTGCA-AA 396
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||
Sbjct 301 GAAACATTTACAACTGCAGGGTAAGGGCTTGAATATTCTGACCTTTAAAGAGCTGCATAA 360
Query 397 GCCTTGAGCAGCAACTATATCATGCATTGATTACTGTCAGAGAGCGAAAGGAACGATTGC 456
|||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 361 -CCTTGAGCAGCAACTATATCATGCCTTGATTACTGTGAGAGAGCGGAAGGAACGATTGC 419
Query 457 TGACTAACCAACTTGAAGAATCACGCCTCAAGGAACAACGAGCAGAGTTGGAAAACGAGA 516
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 420 TGACTAACCAACTTGAAGAATCACGCCTCAAGGAACAACAAGCAGAGTTGGAAAATGAGA 479
Query 517 CCTTGCGTAGACAGGTTCAAGAACTGAGGAGCTTTCTCCCGTCGTTCACCCACTATGTTC 576
||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 480 CCTTGCGTAGACAGGTTCAAGAACTCAGAAGCTTTCTCCCATCGTTCACCCACTATGTTC 539
Query 577 CATCCTACATCAAATGCTTTGCTATAGATCCAAAGAACGCTCTCATAAACCA------C- 629
|||||||||||||||||||||| |||||||| ||||||||| |||||||||| |
Sbjct 540 CATCCTACATCAAATGCTTTGCGATAGATCCCAAGAACGCTGTCATAAACCATGGTTGCT 599
Query 630 -G-AC-A--GTAAATGCAGCCTCCAGAACACCGATTCAGACACAACTTTGCAATTAGGGT 684
| || | || | |||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 600 TGGACGACAGTGAGTGCAGCCTCCAGAAGACCAATTCAGACACAACTTTGCAATTAGGGT 659
Query 685 TGCCGGGAGAGGCACATGATAGAAGGACGAATGAAGGAGAAAGAGAGAGCCCGTCAAGCG 744
||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||
Sbjct 660 TGCCGGGAGAGGCACATGATAGAAGGAAGAATGAGGGAGACAGAGAGAGCCCGTCAAGCG 719
Query 745 ATTCAGTGACAACAAACACGAGCAGCGAAACTGCAGAAAGAGGGGATCAGTCTAGTTTAG 804
| ||||||||||| ||||||| ||| ||||||||| |||| | |||||||||||||||
Sbjct 720 ACTCAGTGACAACGAACACGACCAGAGAAACTGCACAAAG-G---ATCAGTCTAGTTTAG 775
Query 805 CAAATTCTCCACCTGAAGCCAAAAGACAAAGGTTCTCTGTTTAGTCCTAGAAAAGTATGG 864
||||||| ||||||||| |||||| |||| ||||||||||||||| |||| |||||||
Sbjct 776 CAAATTCACCACCTGAAAACAAAAGCCAAATGTTCTCTGTTTAGTCGTAGAGAAGTATGA 835
Query 865 GAGA-AGGCTACTAATGTTTCCTCTTTAGCAAGTATCCGATTGTTTTAAAAGTAATTTTA 923
||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 836 GAGTGAGG-TACTAATGTTTCCTCTTTAGCAAGTATCCGATTATTTTAAAAGTAATTTTA 894
Query 924 GAGGGATACTTGCAAAAAGAAGAGAAGATTCAGTTATCT 962
||||||| |||||||||| ||| ||||||| | ||||||
Sbjct 895 GAGGGATGCTTGCAAAAACAAGTGAAGATTAACTTATCT 933
> Ahg946287 jgi|Araly1|946287|scaffold_702516.1
Length=950
Score = 82.4 bits (44), Expect = 6e-15
Identities = 62/71 (87%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 119 TGGGTTACTTAAGAAAGCTCGTGAGCTCTCTGTTCTTTGTGATGCTGAAGTTGCTGTCAT 178
||| || || ||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 297 TGGTTTGCTCAAGAAAGCTTACGAGCTCTCTGTTCTTTGTGATGCTGAAGTCGCACTCAT 356
Query 179 CGTCTTCTCTA 189
|||||||||||
Sbjct 357 CGTCTTCTCTA 367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35721173229
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5